gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 275 |
| AciI | CCGC | 2 cut(s) | 328, 382 |
| AcsI | RAATTY | 2 cut(s) | 247, 438 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AfaI | GTAC | 1 cut(s) | 304 |
| AgsI | TTSAA | 1 cut(s) | 247 |
| AluBI | AGCT | 3 cut(s) | 24, 364, 454 |
| AluI | AGCT | 3 cut(s) | 24, 364, 454 |
| Alw21I | GWGCWC | 1 cut(s) | 26 |
| AoxI | GGCC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 3 cut(s) | 14, 179, 361 |
| ApoI | RAATTY | 2 cut(s) | 247, 438 |
| AspS9I | GGNCC | 1 cut(s) | 447 |
| AsuHPI | GGTGA | 1 cut(s) | 407 |
| BanII | GRGCYC | 1 cut(s) | 26 |
| BauI | CACGAG | 1 cut(s) | 390 |
| Bbv12I | GWGCWC | 1 cut(s) | 26 |
| BbvI | GCAGC | 2 cut(s) | 166, 373 |
| BccI | CCATC | 1 cut(s) | 152 |
| BfaI | CTAG | 2 cut(s) | 165, 460 |
| BisI | GCNGC | 3 cut(s) | 15, 180, 362 |
| BlsI | GCNGC | 3 cut(s) | 16, 181, 363 |
| BmgT120I | GGNCC | 1 cut(s) | 447 |
| BmsI | GCATC | 2 cut(s) | 177, 184 |
| BsaJI | CCNNGG | 1 cut(s) | 443 |
| Bse3DI | GCAATG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 1 cut(s) | 443 |
| BseMI | GCAATG | 1 cut(s) | 405 |
| BseMII | CTCAG | 1 cut(s) | 353 |
| BseRI | GAGGAG | 1 cut(s) | 37 |
| BseXI | GCAGC | 2 cut(s) | 166, 373 |
| BshFI | GGCC | 1 cut(s) | 449 |
| BsiHKAI | GWGCWC | 1 cut(s) | 26 |
| BsnI | GGCC | 1 cut(s) | 449 |
| Bsp1286I | GDGCHC | 1 cut(s) | 26 |
| Bsp143I | GATC | 3 cut(s) | 82, 114, 373 |
| Bsp19I | CCATGG | 1 cut(s) | 443 |
| BspACI | CCGC | 2 cut(s) | 328, 382 |
| BspANI | GGCC | 1 cut(s) | 449 |
| BspCNI | CTCAG | 1 cut(s) | 352 |
| BspQI | GCTCTTC | 1 cut(s) | 31 |
| BsrDI | GCAATG | 1 cut(s) | 405 |
| BssECI | CCNNGG | 1 cut(s) | 443 |
| BssMI | GATC | 3 cut(s) | 82, 114, 373 |
| BssSI | CACGAG | 1 cut(s) | 390 |
| BssT1I | CCWWGG | 1 cut(s) | 443 |
| Bst2BI | CACGAG | 1 cut(s) | 390 |
| Bst4CI | ACNGT | 2 cut(s) | 268, 280 |
| Bst6I | CTCTTC | 1 cut(s) | 31 |
| BstC8I | GCNNGC | 1 cut(s) | 108 |
| BstDEI | CTNAG | 1 cut(s) | 339 |
| BstDSI | CCRYGG | 1 cut(s) | 443 |
| BstEII | GGTNACC | 1 cut(s) | 395 |
| BstKTI | GATC | 3 cut(s) | 85, 117, 376 |
| BstMBI | GATC | 3 cut(s) | 82, 114, 373 |
| BstPI | GGTNACC | 1 cut(s) | 395 |
| BstV1I | GCAGC | 2 cut(s) | 166, 373 |
| BsuRI | GGCC | 1 cut(s) | 449 |
| BtgI | CCRYGG | 1 cut(s) | 443 |
| BtsI | GCAGTG | 1 cut(s) | 376 |
| BtsIMutI | CAGTG | 2 cut(s) | 264, 376 |
| Cac8I | GCNNGC | 1 cut(s) | 108 |
| Cfr13I | GGNCC | 1 cut(s) | 447 |
| Csp6I | GTAC | 1 cut(s) | 303 |
| CviAII | CATG | 2 cut(s) | 424, 444 |
| CviJI | RGCY | 6 cut(s) | 24, 106, 364, 428, 449, 454 |
| CviKI_1 | RGCY | 6 cut(s) | 24, 106, 364, 428, 449, 454 |
| CviQI | GTAC | 1 cut(s) | 303 |
| DdeI | CTNAG | 1 cut(s) | 339 |
| DpnI | GATC | 3 cut(s) | 84, 116, 375 |
| DpnII | GATC | 3 cut(s) | 82, 114, 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 31 |
| EarI | CTCTTC | 1 cut(s) | 31 |
| Ecl136II | GAGCTC | 1 cut(s) | 24 |
| Eco130I | CCWWGG | 1 cut(s) | 443 |
| Eco24I | GRGCYC | 1 cut(s) | 26 |
| Eco53kI | GAGCTC | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| Eco91I | GGTNACC | 1 cut(s) | 395 |
| EcoICRI | GAGCTC | 1 cut(s) | 24 |
| EcoO65I | GGTNACC | 1 cut(s) | 395 |
| EcoRI | GAATTC | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 443 |
| EcoT38I | GRGCYC | 1 cut(s) | 26 |
| ErhI | CCWWGG | 1 cut(s) | 443 |
| FaeI | CATG | 2 cut(s) | 427, 447 |
| FaiI | YATR | 3 cut(s) | 380, 425, 445 |
| FatI | CATG | 2 cut(s) | 423, 443 |
| FblI | GTMKAC | 1 cut(s) | 275 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 180, 362 |
| FriOI | GRGCYC | 1 cut(s) | 26 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 180, 362 |
| FspBI | CTAG | 2 cut(s) | 165, 460 |
| GluI | GCNGC | 3 cut(s) | 15, 180, 362 |
| HaeIII | GGCC | 1 cut(s) | 449 |
| Hin1II | CATG | 2 cut(s) | 427, 447 |
| HphI | GGTGA | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 1 cut(s) | 276 |
| Hpy188I | TCNGA | 1 cut(s) | 189 |
| Hpy188III | TCNNGA | 2 cut(s) | 221, 419 |
| Hpy8I | GTNNAC | 1 cut(s) | 276 |
| HpyAV | CCTTC | 1 cut(s) | 194 |
| HpyCH4III | ACNGT | 2 cut(s) | 268, 280 |
| HpyCH4V | TGCA | 3 cut(s) | 110, 361, 410 |
| HpyF3I | CTNAG | 1 cut(s) | 339 |
| Hsp92II | CATG | 2 cut(s) | 427, 447 |
| Kzo9I | GATC | 3 cut(s) | 82, 114, 373 |
| LguI | GCTCTTC | 1 cut(s) | 31 |
| LpnPI | CCDG | 3 cut(s) | 88, 189, 440 |
| Lsp1109I | GCAGC | 2 cut(s) | 166, 373 |
| LweI | GCATC | 2 cut(s) | 177, 184 |
| MaeI | CTAG | 2 cut(s) | 165, 460 |
| MaeIII | GTNAC | 2 cut(s) | 134, 395 |
| MalI | GATC | 3 cut(s) | 84, 116, 375 |
| MboI | GATC | 3 cut(s) | 82, 114, 373 |
| MboII | GAAGA | 4 cut(s) | 18, 134, 243, 252 |
| MhlI | GDGCHC | 1 cut(s) | 26 |
| MluCI | AATT | 4 cut(s) | 61, 91, 247, 438 |
| MmeI | TCCRAC | 1 cut(s) | 300 |
| MnlI | CCTC | 4 cut(s) | 44, 55, 58, 108 |
| NcoI | CCATGG | 1 cut(s) | 443 |
| NdeII | GATC | 3 cut(s) | 82, 114, 373 |
| NlaIII | CATG | 2 cut(s) | 427, 447 |
| NmuCI | GTSAC | 2 cut(s) | 134, 395 |
| PciSI | GCTCTTC | 1 cut(s) | 31 |
| PkrI | GCNGC | 3 cut(s) | 16, 181, 363 |
| Psp124BI | GAGCTC | 1 cut(s) | 26 |
| PspEI | GGTNACC | 1 cut(s) | 395 |
| PspPI | GGNCC | 1 cut(s) | 447 |
| RsaI | GTAC | 1 cut(s) | 304 |
| RsaNI | GTAC | 1 cut(s) | 303 |
| SacI | GAGCTC | 1 cut(s) | 26 |
| SapI | GCTCTTC | 1 cut(s) | 31 |
| SatI | GCNGC | 3 cut(s) | 15, 180, 362 |
| Sau3AI | GATC | 3 cut(s) | 82, 114, 373 |
| Sau96I | GGNCC | 1 cut(s) | 447 |
| SduI | GDGCHC | 1 cut(s) | 26 |
| SetI | ASST | 4 cut(s) | 26, 366, 402, 456 |
| SfaNI | GCATC | 2 cut(s) | 177, 184 |
| Sse9I | AATT | 4 cut(s) | 61, 91, 247, 438 |
| SsiI | CCGC | 2 cut(s) | 328, 382 |
| SspMI | CTAG | 2 cut(s) | 165, 460 |
| SstI | GAGCTC | 1 cut(s) | 26 |
| StyI | CCWWGG | 1 cut(s) | 443 |
| TaaI | ACNGT | 2 cut(s) | 268, 280 |
| TaqI | TCGA | 1 cut(s) | 20 |
| TasI | AATT | 4 cut(s) | 61, 91, 247, 438 |
| TscAI | CASTG | 2 cut(s) | 271, 376 |
| TseFI | GTSAC | 2 cut(s) | 134, 395 |
| TseI | GCWGC | 3 cut(s) | 14, 179, 361 |
| Tsp45I | GTSAC | 2 cut(s) | 134, 395 |
| TspRI | CASTG | 2 cut(s) | 271, 376 |
| XapI | RAATTY | 2 cut(s) | 247, 438 |
| XmiI | GTMKAC | 1 cut(s) | 275 |
| XspI | CTAG | 2 cut(s) | 165, 460 |