gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 671 |
| Acc36I | ACCTGC | 2 cut(s) | 611, 671 |
| AciI | CCGC | 1 cut(s) | 540 |
| AclWI | GGATC | 1 cut(s) | 473 |
| AcoI | YGGCCR | 1 cut(s) | 686 |
| AcuI | CTGAAG | 1 cut(s) | 631 |
| AfaI | GTAC | 1 cut(s) | 428 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 497 |
| AgsI | TTSAA | 3 cut(s) | 332, 351, 469 |
| AjnI | CCWGG | 1 cut(s) | 394 |
| AluBI | AGCT | 3 cut(s) | 164, 443, 696 |
| AluI | AGCT | 3 cut(s) | 164, 443, 696 |
| Alw21I | GWGCWC | 1 cut(s) | 166 |
| Alw26I | GTCTC | 3 cut(s) | 62, 292, 578 |
| AlwI | GGATC | 1 cut(s) | 473 |
| AoxI | GGCC | 1 cut(s) | 686 |
| ApeKI | GCWGC | 2 cut(s) | 140, 212 |
| AsuHPI | GGTGA | 1 cut(s) | 652 |
| AsuII | TTCGAA | 1 cut(s) | 115 |
| AsuNHI | GCTAGC | 1 cut(s) | 308 |
| BalI | TGGCCA | 1 cut(s) | 688 |
| BanII | GRGCYC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 2 cut(s) | 116, 617 |
| Bbv12I | GWGCWC | 1 cut(s) | 166 |
| BbvI | GCAGC | 2 cut(s) | 127, 199 |
| BccI | CCATC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 1 cut(s) | 396 |
| BcoDI | GTCTC | 3 cut(s) | 62, 292, 578 |
| BfaI | CTAG | 2 cut(s) | 309, 697 |
| BfuAI | ACCTGC | 2 cut(s) | 611, 671 |
| BglII | AGATCT | 1 cut(s) | 669 |
| BisI | GCNGC | 2 cut(s) | 141, 213 |
| BlsI | GCNGC | 2 cut(s) | 142, 214 |
| Bme1390I | CCNGG | 1 cut(s) | 396 |
| BmrFI | CCNGG | 1 cut(s) | 396 |
| BmsI | GCATC | 2 cut(s) | 49, 350 |
| BmtI | GCTAGC | 1 cut(s) | 312 |
| BpiI | GAAGAC | 2 cut(s) | 116, 617 |
| Bpu14I | TTCGAA | 1 cut(s) | 115 |
| BsaI | GGTCTC | 1 cut(s) | 578 |
| BsaJI | CCNNGG | 2 cut(s) | 524, 689 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 497 |
| Bse1I | ACTGG | 3 cut(s) | 325, 407, 502 |
| Bse3DI | GCAATG | 2 cut(s) | 276, 601 |
| BseBI | CCWGG | 1 cut(s) | 396 |
| BseDI | CCNNGG | 2 cut(s) | 524, 689 |
| BseGI | GGATG | 3 cut(s) | 64, 413, 429 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 497 |
| BseMI | GCAATG | 2 cut(s) | 276, 601 |
| BseMII | CTCAG | 4 cut(s) | 123, 180, 207, 437 |
| BseNI | ACTGG | 3 cut(s) | 325, 407, 502 |
| BseXI | GCAGC | 2 cut(s) | 127, 199 |
| BshFI | GGCC | 1 cut(s) | 688 |
| BsiHKAI | GWGCWC | 1 cut(s) | 166 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 497 |
| BsmAI | GTCTC | 3 cut(s) | 62, 292, 578 |
| BsnI | GGCC | 1 cut(s) | 688 |
| Bso31I | GGTCTC | 1 cut(s) | 578 |
| Bsp119I | TTCGAA | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 1 cut(s) | 166 |
| Bsp143I | GATC | 2 cut(s) | 478, 669 |
| Bsp19I | CCATGG | 1 cut(s) | 689 |
| BspACI | CCGC | 1 cut(s) | 540 |
| BspANI | GGCC | 1 cut(s) | 688 |
| BspCNI | CTCAG | 4 cut(s) | 124, 181, 208, 436 |
| BspMI | ACCTGC | 2 cut(s) | 611, 671 |
| BspOI | GCTAGC | 1 cut(s) | 312 |
| BspPI | GGATC | 1 cut(s) | 473 |
| BspT104I | TTCGAA | 1 cut(s) | 115 |
| BspTNI | GGTCTC | 1 cut(s) | 578 |
| BsrDI | GCAATG | 2 cut(s) | 276, 601 |
| BsrI | ACTGG | 3 cut(s) | 325, 407, 502 |
| BssECI | CCNNGG | 2 cut(s) | 524, 689 |
| BssMI | GATC | 2 cut(s) | 478, 669 |
| BssT1I | CCWWGG | 2 cut(s) | 524, 689 |
| Bst2UI | CCWGG | 1 cut(s) | 396 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 112, 154, 379 |
| Bst6I | CTCTTC | 1 cut(s) | 112 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 275 |
| BstBI | TTCGAA | 1 cut(s) | 115 |
| BstC8I | GCNNGC | 4 cut(s) | 310, 369, 601, 643 |
| BstDEI | CTNAG | 5 cut(s) | 2, 132, 189, 216, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 689 |
| BstF5I | GGATG | 3 cut(s) | 64, 413, 429 |
| BstKTI | GATC | 2 cut(s) | 481, 672 |
| BstMAI | GTCTC | 3 cut(s) | 62, 292, 578 |
| BstMBI | GATC | 2 cut(s) | 478, 669 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 600 |
| BstNI | CCWGG | 1 cut(s) | 396 |
| BstSCI | CCNGG | 1 cut(s) | 394 |
| BstV1I | GCAGC | 2 cut(s) | 127, 199 |
| BstV2I | GAAGAC | 2 cut(s) | 116, 617 |
| BstX2I | RGATCY | 1 cut(s) | 669 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 674 |
| BstYI | RGATCY | 1 cut(s) | 669 |
| BsuRI | GGCC | 1 cut(s) | 688 |
| BtgI | CCRYGG | 1 cut(s) | 689 |
| BtsCI | GGATG | 3 cut(s) | 64, 413, 429 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| BveI | ACCTGC | 2 cut(s) | 611, 671 |
| Cac8I | GCNNGC | 4 cut(s) | 310, 369, 601, 643 |
| Csp6I | GTAC | 1 cut(s) | 427 |
| CviAII | CATG | 2 cut(s) | 383, 690 |
| CviQI | GTAC | 1 cut(s) | 427 |
| DdeI | CTNAG | 5 cut(s) | 2, 132, 189, 216, 423 |
| DpnI | GATC | 2 cut(s) | 480, 671 |
| DpnII | GATC | 2 cut(s) | 478, 669 |
| EaeI | YGGCCR | 1 cut(s) | 686 |
| Eam1104I | CTCTTC | 1 cut(s) | 112 |
| EarI | CTCTTC | 1 cut(s) | 112 |
| Ecl136II | GAGCTC | 1 cut(s) | 164 |
| Eco130I | CCWWGG | 2 cut(s) | 524, 689 |
| Eco24I | GRGCYC | 1 cut(s) | 166 |
| Eco31I | GGTCTC | 1 cut(s) | 578 |
| Eco53kI | GAGCTC | 1 cut(s) | 164 |
| Eco57I | CTGAAG | 1 cut(s) | 631 |
| EcoICRI | GAGCTC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 2 cut(s) | 524, 689 |
| EcoT22I | ATGCAT | 1 cut(s) | 64 |
| EcoT38I | GRGCYC | 1 cut(s) | 166 |
| ErhI | CCWWGG | 2 cut(s) | 524, 689 |
| FaeI | CATG | 2 cut(s) | 386, 693 |
| FatI | CATG | 2 cut(s) | 382, 689 |
| FauI | CCCGC | 1 cut(s) | 533 |
| FauNDI | CATATG | 1 cut(s) | 451 |
| Fnu4HI | GCNGC | 2 cut(s) | 141, 213 |
| FokI | GGATG | 3 cut(s) | 71, 400, 416 |
| FriOI | GRGCYC | 1 cut(s) | 166 |
| Fsp4HI | GCNGC | 2 cut(s) | 141, 213 |
| FspBI | CTAG | 2 cut(s) | 309, 697 |
| GluI | GCNGC | 2 cut(s) | 141, 213 |
| HaeIII | GGCC | 1 cut(s) | 688 |
| Hin1II | CATG | 2 cut(s) | 386, 693 |
| HinfI | GANTC | 1 cut(s) | 652 |
| HphI | GGTGA | 1 cut(s) | 652 |
| Hpy188I | TCNGA | 1 cut(s) | 133 |
| Hpy188III | TCNNGA | 4 cut(s) | 35, 86, 241, 649 |
| HpyAV | CCTTC | 1 cut(s) | 357 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 112, 154, 379 |
| HpyCH4V | TGCA | 5 cut(s) | 62, 269, 386, 620, 641 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 600 |
| HpyF3I | CTNAG | 5 cut(s) | 2, 132, 189, 216, 423 |
| Hsp92II | CATG | 2 cut(s) | 386, 693 |
| Kzo9I | GATC | 2 cut(s) | 478, 669 |
| LmnI | GCTCC | 1 cut(s) | 693 |
| Lsp1109I | GCAGC | 2 cut(s) | 127, 199 |
| LweI | GCATC | 2 cut(s) | 49, 350 |
| MaeI | CTAG | 2 cut(s) | 309, 697 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 2 cut(s) | 480, 671 |
| MboI | GATC | 2 cut(s) | 478, 669 |
| MboII | GAAGA | 3 cut(s) | 116, 129, 617 |
| MflI | RGATCY | 1 cut(s) | 669 |
| MhlI | GDGCHC | 1 cut(s) | 166 |
| MlsI | TGGCCA | 1 cut(s) | 688 |
| MluCI | AATT | 4 cut(s) | 42, 167, 435, 577 |
| MluNI | TGGCCA | 1 cut(s) | 688 |
| MmeI | TCCRAC | 1 cut(s) | 55 |
| MnlI | CCTC | 7 cut(s) | 19, 88, 113, 382, 402, 509, 584 |
| Mox20I | TGGCCA | 1 cut(s) | 688 |
| Mph1103I | ATGCAT | 1 cut(s) | 64 |
| MscI | TGGCCA | 1 cut(s) | 688 |
| MseI | TTAA | 4 cut(s) | 45, 147, 194, 531 |
| Msp20I | TGGCCA | 1 cut(s) | 688 |
| MspR9I | CCNGG | 1 cut(s) | 396 |
| MvaI | CCWGG | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 600 |
| NcoI | CCATGG | 1 cut(s) | 689 |
| NdeI | CATATG | 1 cut(s) | 451 |
| NdeII | GATC | 2 cut(s) | 478, 669 |
| NheI | GCTAGC | 1 cut(s) | 308 |
| NlaIII | CATG | 2 cut(s) | 386, 693 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| NsiI | ATGCAT | 1 cut(s) | 64 |
| NspV | TTCGAA | 1 cut(s) | 115 |
| PaqCI | CACCTGC | 1 cut(s) | 671 |
| PfeI | GAWTC | 1 cut(s) | 652 |
| PkrI | GCNGC | 2 cut(s) | 142, 214 |
| Psp124BI | GAGCTC | 1 cut(s) | 166 |
| Psp6I | CCWGG | 1 cut(s) | 394 |
| PspGI | CCWGG | 1 cut(s) | 394 |
| PsuI | RGATCY | 1 cut(s) | 669 |
| RsaI | GTAC | 1 cut(s) | 428 |
| RsaNI | GTAC | 1 cut(s) | 427 |
| SacI | GAGCTC | 1 cut(s) | 166 |
| SaqAI | TTAA | 4 cut(s) | 45, 147, 194, 531 |
| SatI | GCNGC | 2 cut(s) | 141, 213 |
| Sau3AI | GATC | 2 cut(s) | 478, 669 |
| ScrFI | CCNGG | 1 cut(s) | 396 |
| SduI | GDGCHC | 1 cut(s) | 166 |
| SetI | ASST | 7 cut(s) | 124, 166, 445, 530, 625, 665, 698 |
| SfaNI | GCATC | 2 cut(s) | 49, 350 |
| SfuI | TTCGAA | 1 cut(s) | 115 |
| Sse9I | AATT | 4 cut(s) | 42, 167, 435, 577 |
| SsiI | CCGC | 1 cut(s) | 540 |
| SspMI | CTAG | 2 cut(s) | 309, 697 |
| SstI | GAGCTC | 1 cut(s) | 166 |
| StyD4I | CCNGG | 1 cut(s) | 394 |
| StyI | CCWWGG | 2 cut(s) | 524, 689 |
| TaaI | ACNGT | 4 cut(s) | 73, 112, 154, 379 |
| TaqI | TCGA | 1 cut(s) | 115 |
| TasI | AATT | 4 cut(s) | 42, 167, 435, 577 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TfiI | GAWTC | 1 cut(s) | 652 |
| Tru1I | TTAA | 4 cut(s) | 45, 147, 194, 531 |
| Tru9I | TTAA | 4 cut(s) | 45, 147, 194, 531 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| TseI | GCWGC | 2 cut(s) | 140, 212 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspDTI | ATGAA | 4 cut(s) | 249, 371, 402, 450 |
| TspRI | CASTG | 1 cut(s) | 159 |
| XspI | CTAG | 2 cut(s) | 309, 697 |
| Zsp2I | ATGCAT | 1 cut(s) | 64 |