gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 75 | 4.2e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 64 |
| Acc36I | ACCTGC | 1 cut(s) | 64 |
| AccB1I | GGYRCC | 2 cut(s) | 52, 526 |
| AciI | CCGC | 1 cut(s) | 39 |
| AgsI | TTSAA | 2 cut(s) | 345, 582 |
| AjiI | CACGTC | 1 cut(s) | 299 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 373, 405 |
| AluBI | AGCT | 6 cut(s) | 138, 200, 230, 420, 557, 575 |
| AluI | AGCT | 6 cut(s) | 138, 200, 230, 420, 557, 575 |
| Alw26I | GTCTC | 4 cut(s) | 147, 180, 247, 369 |
| Ama87I | CYCGRG | 1 cut(s) | 375 |
| ApeKI | GCWGC | 1 cut(s) | 230 |
| AseI | ATTAAT | 1 cut(s) | 30 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspLEI | GCGC | 1 cut(s) | 210 |
| AspS9I | GGNCC | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| AvaI | CYCGRG | 1 cut(s) | 375 |
| AvaII | GGWCC | 1 cut(s) | 113 |
| BanI | GGYRCC | 2 cut(s) | 52, 526 |
| BauI | CACGAG | 1 cut(s) | 150 |
| BbvI | GCAGC | 1 cut(s) | 217 |
| BccI | CCATC | 3 cut(s) | 14, 101, 418 |
| BceAI | ACGGC | 1 cut(s) | 514 |
| BciVI | GTATCC | 1 cut(s) | 100 |
| BcoDI | GTCTC | 4 cut(s) | 147, 180, 247, 369 |
| BfaI | CTAG | 1 cut(s) | 236 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BfuAI | ACCTGC | 1 cut(s) | 64 |
| BfuI | GTATCC | 1 cut(s) | 100 |
| BisI | GCNGC | 1 cut(s) | 231 |
| BlsI | GCNGC | 1 cut(s) | 232 |
| Bme18I | GGWCC | 1 cut(s) | 113 |
| BmeT110I | CYCGRG | 1 cut(s) | 375 |
| BmgBI | CACGTC | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 1 cut(s) | 113 |
| BmiI | GGNNCC | 3 cut(s) | 54, 335, 528 |
| BpmI | CTGGAG | 1 cut(s) | 555 |
| BsaI | GGTCTC | 1 cut(s) | 369 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 373, 403, 559 |
| BseGI | GGATG | 1 cut(s) | 406 |
| BseMII | CTCAG | 2 cut(s) | 192, 556 |
| BseRI | GAGGAG | 2 cut(s) | 235, 301 |
| BseXI | GCAGC | 1 cut(s) | 217 |
| BshNI | GGYRCC | 2 cut(s) | 52, 526 |
| BsiHKCI | CYCGRG | 1 cut(s) | 375 |
| BsmAI | GTCTC | 4 cut(s) | 147, 180, 247, 369 |
| Bso31I | GGTCTC | 1 cut(s) | 369 |
| BsoBI | CYCGRG | 1 cut(s) | 375 |
| Bsp143I | GATC | 2 cut(s) | 82, 217 |
| BspACI | CCGC | 1 cut(s) | 39 |
| BspCNI | CTCAG | 2 cut(s) | 193, 555 |
| BspHI | TCATGA | 1 cut(s) | 99 |
| BspLI | GGNNCC | 3 cut(s) | 54, 335, 528 |
| BspMAI | CTGCAG | 1 cut(s) | 61 |
| BspMI | ACCTGC | 1 cut(s) | 64 |
| BspT107I | GGYRCC | 2 cut(s) | 52, 526 |
| BspTNI | GGTCTC | 1 cut(s) | 369 |
| BssMI | GATC | 2 cut(s) | 82, 217 |
| BssSI | CACGAG | 1 cut(s) | 150 |
| Bst2BI | CACGAG | 1 cut(s) | 150 |
| BstDEI | CTNAG | 4 cut(s) | 201, 534, 542, 585 |
| BstF5I | GGATG | 1 cut(s) | 406 |
| BstHHI | GCGC | 1 cut(s) | 210 |
| BstKTI | GATC | 2 cut(s) | 85, 220 |
| BstMAI | GTCTC | 4 cut(s) | 147, 180, 247, 369 |
| BstMBI | GATC | 2 cut(s) | 82, 217 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 554 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 1 cut(s) | 217 |
| BsuI | GTATCC | 1 cut(s) | 100 |
| BtrI | CACGTC | 1 cut(s) | 299 |
| BtsCI | GGATG | 1 cut(s) | 406 |
| BtsI | GCAGTG | 1 cut(s) | 477 |
| BtsIMutI | CAGTG | 2 cut(s) | 477, 550 |
| BveI | ACCTGC | 1 cut(s) | 64 |
| CciI | TCATGA | 1 cut(s) | 99 |
| CfoI | GCGC | 1 cut(s) | 210 |
| Cfr13I | GGNCC | 1 cut(s) | 113 |
| CviAII | CATG | 4 cut(s) | 100, 211, 266, 441 |
| CviJI | RGCY | 9 cut(s) | 66, 138, 185, 200, 230, 303, 420, 557, 575 |
| CviKI_1 | RGCY | 9 cut(s) | 66, 138, 185, 200, 230, 303, 420, 557, 575 |
| DdeI | CTNAG | 4 cut(s) | 201, 534, 542, 585 |
| DpnI | GATC | 2 cut(s) | 84, 219 |
| DpnII | GATC | 2 cut(s) | 82, 217 |
| Eco31I | GGTCTC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 1 cut(s) | 113 |
| Eco88I | CYCGRG | 1 cut(s) | 375 |
| FaeI | CATG | 4 cut(s) | 103, 214, 269, 444 |
| FaiI | YATR | 9 cut(s) | 101, 123, 171, 212, 251, 267, 442, 503, 551 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FatI | CATG | 4 cut(s) | 99, 210, 265, 440 |
| Fnu4HI | GCNGC | 1 cut(s) | 231 |
| FokI | GGATG | 1 cut(s) | 393 |
| Fsp4HI | GCNGC | 1 cut(s) | 231 |
| FspBI | CTAG | 1 cut(s) | 236 |
| GlaI | GCGC | 1 cut(s) | 209 |
| GluI | GCNGC | 1 cut(s) | 231 |
| GsuI | CTGGAG | 1 cut(s) | 555 |
| HhaI | GCGC | 1 cut(s) | 210 |
| Hin1II | CATG | 4 cut(s) | 103, 214, 269, 444 |
| Hin6I | GCGC | 1 cut(s) | 208 |
| HinP1I | GCGC | 1 cut(s) | 208 |
| HindIII | AAGCTT | 1 cut(s) | 418 |
| HinfI | GANTC | 1 cut(s) | 173 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 1 cut(s) | 567 |
| Hpy188I | TCNGA | 3 cut(s) | 13, 333, 456 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 100, 179, 485 |
| Hpy8I | GTNNAC | 1 cut(s) | 567 |
| HpyAV | CCTTC | 3 cut(s) | 197, 516, 588 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyCH4V | TGCA | 2 cut(s) | 59, 462 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 554 |
| HpyF3I | CTNAG | 4 cut(s) | 201, 534, 542, 585 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| Hsp92II | CATG | 4 cut(s) | 103, 214, 269, 444 |
| HspAI | GCGC | 1 cut(s) | 208 |
| Kzo9I | GATC | 2 cut(s) | 82, 217 |
| LmnI | GCTCC | 1 cut(s) | 580 |
| LpnPI | CCDG | 6 cut(s) | 45, 69, 164, 351, 463, 470 |
| Lsp1109I | GCAGC | 1 cut(s) | 217 |
| MaeI | CTAG | 1 cut(s) | 236 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MaeIII | GTNAC | 1 cut(s) | 473 |
| MalI | GATC | 2 cut(s) | 84, 219 |
| MboI | GATC | 2 cut(s) | 82, 217 |
| MboII | GAAGA | 1 cut(s) | 182 |
| MluCI | AATT | 2 cut(s) | 27, 31 |
| MlyI | GAGTC | 1 cut(s) | 182 |
| MmeI | TCCRAC | 2 cut(s) | 91, 453 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MseI | TTAA | 1 cut(s) | 30 |
| MslI | CAYNNNNRTG | 1 cut(s) | 98 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 554 |
| NdeII | GATC | 2 cut(s) | 82, 217 |
| NlaIII | CATG | 4 cut(s) | 103, 214, 269, 444 |
| NlaIV | GGNNCC | 3 cut(s) | 54, 335, 528 |
| NmuCI | GTSAC | 1 cut(s) | 473 |
| PaeR7I | CTCGAG | 1 cut(s) | 375 |
| PagI | TCATGA | 1 cut(s) | 99 |
| PaqCI | CACCTGC | 1 cut(s) | 64 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PkrI | GCNGC | 1 cut(s) | 232 |
| PleI | GAGTC | 1 cut(s) | 181 |
| PpsI | GAGTC | 1 cut(s) | 181 |
| PshBI | ATTAAT | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 3 cut(s) | 54, 335, 528 |
| PspPI | GGNCC | 1 cut(s) | 113 |
| PspXI | VCTCGAGB | 1 cut(s) | 375 |
| PstI | CTGCAG | 1 cut(s) | 61 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RseI | CAYNNNNRTG | 1 cut(s) | 98 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| SatI | GCNGC | 1 cut(s) | 231 |
| Sau3AI | GATC | 2 cut(s) | 82, 217 |
| Sau96I | GGNCC | 1 cut(s) | 113 |
| SbfI | CCTGCAGG | 1 cut(s) | 61 |
| SchI | GAGTC | 1 cut(s) | 182 |
| SdaI | CCTGCAGG | 1 cut(s) | 61 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| Sfr274I | CTCGAG | 1 cut(s) | 375 |
| SinI | GGWCC | 1 cut(s) | 113 |
| SlaI | CTCGAG | 1 cut(s) | 375 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 98 |
| SmlI | CTYRAG | 1 cut(s) | 375 |
| SmoI | CTYRAG | 1 cut(s) | 375 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 61 |
| Sse9I | AATT | 2 cut(s) | 27, 31 |
| SsiI | CCGC | 1 cut(s) | 39 |
| SspMI | CTAG | 1 cut(s) | 236 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TaqI | TCGA | 2 cut(s) | 286, 376 |
| TasI | AATT | 2 cut(s) | 27, 31 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TscAI | CASTG | 2 cut(s) | 484, 550 |
| TseFI | GTSAC | 1 cut(s) | 473 |
| TseI | GCWGC | 1 cut(s) | 230 |
| Tsp45I | GTSAC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 4 cut(s) | 116, 227, 254, 518 |
| TspRI | CASTG | 2 cut(s) | 484, 550 |
| VpaK11BI | GGWCC | 1 cut(s) | 113 |
| VspI | ATTAAT | 1 cut(s) | 30 |
| XhoI | CTCGAG | 1 cut(s) | 375 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |
| XspI | CTAG | 1 cut(s) | 236 |