gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 45 - 211 | 1.8e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1065 |
| AccB1I | GGYRCC | 1 cut(s) | 1112 |
| AccBSI | CCGCTC | 1 cut(s) | 683 |
| AccII | CGCG | 3 cut(s) | 705, 750, 792 |
| AccIII | TCCGGA | 1 cut(s) | 938 |
| AciI | CCGC | 6 cut(s) | 130, 324, 681, 705, 750, 792 |
| AclWI | GGATC | 2 cut(s) | 373, 386 |
| AcoI | YGGCCR | 1 cut(s) | 967 |
| AcsI | RAATTY | 1 cut(s) | 960 |
| AfaI | GTAC | 4 cut(s) | 157, 409, 421, 922 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 749, 1139, 1169 |
| AgsI | TTSAA | 2 cut(s) | 605, 1022 |
| AjnI | CCWGG | 2 cut(s) | 742, 973 |
| AluBI | AGCT | 8 cut(s) | 73, 136, 388, 561, 608, 677, 902, 908 |
| AluI | AGCT | 8 cut(s) | 73, 136, 388, 561, 608, 677, 902, 908 |
| Alw21I | GWGCWC | 1 cut(s) | 297 |
| Alw26I | GTCTC | 5 cut(s) | 203, 372, 542, 570, 1049 |
| AlwI | GGATC | 2 cut(s) | 373, 386 |
| Ama87I | CYCGRG | 2 cut(s) | 573, 768 |
| Aor13HI | TCCGGA | 1 cut(s) | 938 |
| AoxI | GGCC | 4 cut(s) | 3, 127, 740, 967 |
| ApeKI | GCWGC | 3 cut(s) | 326, 388, 1058 |
| ApoI | RAATTY | 1 cut(s) | 960 |
| AseI | ATTAAT | 2 cut(s) | 270, 453 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 609 |
| AspLEI | GCGC | 1 cut(s) | 630 |
| AspS9I | GGNCC | 6 cut(s) | 4, 536, 722, 740, 795, 887 |
| AsuHPI | GGTGA | 1 cut(s) | 854 |
| AvaI | CYCGRG | 2 cut(s) | 573, 768 |
| AvaII | GGWCC | 4 cut(s) | 536, 722, 795, 887 |
| BamHI | GGATCC | 1 cut(s) | 378 |
| BanI | GGYRCC | 1 cut(s) | 1112 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 597, 629, 709, 741, 1135, 1167 |
| BauI | CACGAG | 1 cut(s) | 828 |
| BbsI | GAAGAC | 2 cut(s) | 641, 809 |
| Bbv12I | GWGCWC | 1 cut(s) | 297 |
| BbvI | GCAGC | 3 cut(s) | 313, 375, 1045 |
| BccI | CCATC | 5 cut(s) | 133, 146, 232, 1045, 1079 |
| BceAI | ACGGC | 2 cut(s) | 615, 954 |
| BciT130I | CCWGG | 2 cut(s) | 744, 975 |
| BcoDI | GTCTC | 5 cut(s) | 203, 372, 542, 570, 1049 |
| BfaI | CTAG | 4 cut(s) | 74, 786, 822, 905 |
| BfmI | CTRYAG | 1 cut(s) | 897 |
| BfoI | RGCGCY | 1 cut(s) | 631 |
| BglII | AGATCT | 1 cut(s) | 1196 |
| BisI | GCNGC | 4 cut(s) | 130, 327, 389, 1059 |
| BlsI | GCNGC | 4 cut(s) | 131, 328, 390, 1060 |
| Bme1390I | CCNGG | 2 cut(s) | 744, 975 |
| Bme18I | GGWCC | 4 cut(s) | 536, 722, 795, 887 |
| BmeT110I | CYCGRG | 2 cut(s) | 573, 768 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 536, 722, 740, 795, 887 |
| BmiI | GGNNCC | 5 cut(s) | 6, 380, 796, 871, 1114 |
| BmrFI | CCNGG | 2 cut(s) | 744, 975 |
| BmsI | GCATC | 1 cut(s) | 957 |
| BoxI | GACNNNNGTC | 1 cut(s) | 554 |
| BpiI | GAAGAC | 2 cut(s) | 641, 809 |
| BpmI | CTGGAG | 2 cut(s) | 368, 504 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1158 |
| BsaBI | GATNNNNATC | 1 cut(s) | 504 |
| BsaI | GGTCTC | 1 cut(s) | 542 |
| BsaJI | CCNNGG | 3 cut(s) | 342, 865, 1223 |
| BsaWI | WCCGGW | 1 cut(s) | 938 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 477, 507, 854, 884 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 749, 1139, 1169 |
| Bse1I | ACTGG | 1 cut(s) | 239 |
| Bse3DI | GCAATG | 3 cut(s) | 952, 1059, 1146 |
| Bse8I | GATNNNNATC | 1 cut(s) | 504 |
| BseAI | TCCGGA | 1 cut(s) | 938 |
| BseBI | CCWGG | 2 cut(s) | 744, 975 |
| BseDI | CCNNGG | 3 cut(s) | 342, 865, 1223 |
| BseGI | GGATG | 3 cut(s) | 243, 923, 948 |
| BseJI | GATNNNNATC | 1 cut(s) | 504 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 749, 1139, 1169 |
| BseMI | GCAATG | 3 cut(s) | 952, 1059, 1146 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 239 |
| BseRI | GAGGAG | 5 cut(s) | 13, 16, 19, 28, 862 |
| BseXI | GCAGC | 3 cut(s) | 313, 375, 1045 |
| BsgI | GTGCAG | 2 cut(s) | 549, 876 |
| Bsh1236I | CGCG | 3 cut(s) | 705, 750, 792 |
| Bsh1285I | CGRYCG | 2 cut(s) | 303, 709 |
| BshFI | GGCC | 4 cut(s) | 5, 129, 742, 969 |
| BshNI | GGYRCC | 1 cut(s) | 1112 |
| BsiEI | CGRYCG | 2 cut(s) | 303, 709 |
| BsiHKAI | GWGCWC | 1 cut(s) | 297 |
| BsiHKCI | CYCGRG | 2 cut(s) | 573, 768 |
| BsiSI | CCGG | 1 cut(s) | 939 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 749, 1139, 1169 |
| BsmAI | GTCTC | 5 cut(s) | 203, 372, 542, 570, 1049 |
| BsmBI | CGTCTC | 2 cut(s) | 203, 1049 |
| BsnI | GGCC | 4 cut(s) | 5, 129, 742, 969 |
| Bso31I | GGTCTC | 1 cut(s) | 542 |
| BsoBI | CYCGRG | 2 cut(s) | 573, 768 |
| Bsp1286I | GDGCHC | 1 cut(s) | 297 |
| Bsp13I | TCCGGA | 1 cut(s) | 938 |
| Bsp143I | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| BspACI | CCGC | 6 cut(s) | 130, 324, 681, 705, 750, 792 |
| BspANI | GGCC | 4 cut(s) | 5, 129, 742, 969 |
| BspCNI | CTCAG | 1 cut(s) | 197 |
| BspEI | TCCGGA | 1 cut(s) | 938 |
| BspFNI | CGCG | 3 cut(s) | 705, 750, 792 |
| BspLI | GGNNCC | 5 cut(s) | 6, 380, 796, 871, 1114 |
| BspPI | GGATC | 2 cut(s) | 373, 386 |
| BspQI | GCTCTTC | 2 cut(s) | 615, 690 |
| BspT107I | GGYRCC | 1 cut(s) | 1112 |
| BspTNI | GGTCTC | 1 cut(s) | 542 |
| BsrBI | CCGCTC | 1 cut(s) | 683 |
| BsrDI | GCAATG | 3 cut(s) | 952, 1059, 1146 |
| BsrI | ACTGG | 1 cut(s) | 239 |
| BssECI | CCNNGG | 3 cut(s) | 342, 865, 1223 |
| BssMI | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| BssSI | CACGAG | 1 cut(s) | 828 |
| BssT1I | CCWWGG | 1 cut(s) | 342 |
| Bst2BI | CACGAG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 2 cut(s) | 744, 975 |
| Bst4CI | ACNGT | 7 cut(s) | 214, 292, 304, 412, 556, 866, 1172 |
| Bst6I | CTCTTC | 6 cut(s) | 615, 690, 880, 885, 1081, 1224 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 954, 1058 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 134, 1101 |
| BstDEI | CTNAG | 2 cut(s) | 184, 1158 |
| BstDSI | CCRYGG | 1 cut(s) | 865 |
| BstEII | GGTNACC | 1 cut(s) | 860 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1137 |
| BstF5I | GGATG | 3 cut(s) | 243, 923, 948 |
| BstFNI | CGCG | 3 cut(s) | 705, 750, 792 |
| BstH2I | RGCGCY | 1 cut(s) | 631 |
| BstHHI | GCGC | 1 cut(s) | 630 |
| BstKTI | GATC | 7 cut(s) | 250, 381, 400, 508, 664, 701, 1199 |
| BstMAI | GTCTC | 5 cut(s) | 203, 372, 542, 570, 1049 |
| BstMBI | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| BstMCI | CGRYCG | 2 cut(s) | 303, 709 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 174, 689, 899, 954, 1058 |
| BstNI | CCWGG | 2 cut(s) | 744, 975 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 554 |
| BstPI | GGTNACC | 1 cut(s) | 860 |
| BstSCI | CCNGG | 2 cut(s) | 742, 973 |
| BstSFI | CTRYAG | 1 cut(s) | 897 |
| BstUI | CGCG | 3 cut(s) | 705, 750, 792 |
| BstV1I | GCAGC | 3 cut(s) | 313, 375, 1045 |
| BstV2I | GAAGAC | 2 cut(s) | 641, 809 |
| BstX2I | RGATCY | 2 cut(s) | 378, 1196 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 965 |
| BstYI | RGATCY | 2 cut(s) | 378, 1196 |
| BsuRI | GGCC | 4 cut(s) | 5, 129, 742, 969 |
| BtgI | CCRYGG | 1 cut(s) | 865 |
| BtsCI | GGATG | 3 cut(s) | 243, 923, 948 |
| BtsI | GCAGTG | 1 cut(s) | 1047 |
| BtsIMutI | CAGTG | 1 cut(s) | 1047 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 134, 1101 |
| CfoI | GCGC | 1 cut(s) | 630 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 536, 722, 740, 795, 887 |
| CseI | GACGC | 1 cut(s) | 1223 |
| Csp6I | GTAC | 4 cut(s) | 156, 408, 420, 921 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1168, 1203 |
| CviAII | CATG | 6 cut(s) | 222, 523, 689, 761, 1006, 1124 |
| CviQI | GTAC | 4 cut(s) | 156, 408, 420, 921 |
| DdeI | CTNAG | 2 cut(s) | 184, 1158 |
| DpnI | GATC | 7 cut(s) | 249, 380, 399, 507, 663, 700, 1198 |
| DpnII | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| EaeI | YGGCCR | 1 cut(s) | 967 |
| Eam1104I | CTCTTC | 6 cut(s) | 615, 690, 880, 885, 1081, 1224 |
| EarI | CTCTTC | 6 cut(s) | 615, 690, 880, 885, 1081, 1224 |
| Eco130I | CCWWGG | 1 cut(s) | 342 |
| Eco31I | GGTCTC | 1 cut(s) | 542 |
| Eco47I | GGWCC | 4 cut(s) | 536, 722, 795, 887 |
| Eco88I | CYCGRG | 2 cut(s) | 573, 768 |
| Eco91I | GGTNACC | 1 cut(s) | 860 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1137 |
| EcoO109I | RGGNCCY | 1 cut(s) | 795 |
| EcoO65I | GGTNACC | 1 cut(s) | 860 |
| EcoRII | CCWGG | 2 cut(s) | 742, 973 |
| EcoT14I | CCWWGG | 1 cut(s) | 342 |
| EcoT22I | ATGCAT | 1 cut(s) | 528 |
| ErhI | CCWWGG | 1 cut(s) | 342 |
| Esp3I | CGTCTC | 2 cut(s) | 203, 1049 |
| FaeI | CATG | 6 cut(s) | 225, 526, 692, 764, 1009, 1127 |
| FatI | CATG | 6 cut(s) | 221, 522, 688, 760, 1005, 1123 |
| FauI | CCCGC | 1 cut(s) | 785 |
| Fnu4HI | GCNGC | 4 cut(s) | 130, 327, 389, 1059 |
| FokI | GGATG | 3 cut(s) | 250, 910, 935 |
| Fsp4HI | GCNGC | 4 cut(s) | 130, 327, 389, 1059 |
| FspBI | CTAG | 4 cut(s) | 74, 786, 822, 905 |
| GlaI | GCGC | 1 cut(s) | 629 |
| GluI | GCNGC | 4 cut(s) | 130, 327, 389, 1059 |
| GsuI | CTGGAG | 2 cut(s) | 368, 504 |
| HaeII | RGCGCY | 1 cut(s) | 631 |
| HaeIII | GGCC | 4 cut(s) | 5, 129, 742, 969 |
| HapII | CCGG | 1 cut(s) | 939 |
| HgaI | GACGC | 1 cut(s) | 1223 |
| HhaI | GCGC | 1 cut(s) | 630 |
| Hin1II | CATG | 6 cut(s) | 225, 526, 692, 764, 1009, 1127 |
| Hin6I | GCGC | 1 cut(s) | 628 |
| HinP1I | GCGC | 1 cut(s) | 628 |
| HincII | GTYRAC | 1 cut(s) | 204 |
| HindII | GTYRAC | 1 cut(s) | 204 |
| HindIII | AAGCTT | 1 cut(s) | 675 |
| HinfI | GANTC | 4 cut(s) | 35, 338, 596, 1129 |
| HpaII | CCGG | 1 cut(s) | 939 |
| HphI | GGTGA | 1 cut(s) | 854 |
| Hpy166II | GTNNAC | 1 cut(s) | 204 |
| Hpy188I | TCNGA | 6 cut(s) | 34, 187, 282, 436, 499, 1224 |
| Hpy188III | TCNNGA | 6 cut(s) | 298, 443, 696, 939, 989, 1082 |
| Hpy8I | GTNNAC | 1 cut(s) | 204 |
| HpyAV | CCTTC | 5 cut(s) | 128, 188, 663, 735, 1016 |
| HpyCH4III | ACNGT | 7 cut(s) | 214, 292, 304, 412, 556, 866, 1172 |
| HpyCH4V | TGCA | 4 cut(s) | 526, 566, 893, 1052 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 174, 689, 899, 954, 1058 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 1158 |
| Hsp92II | CATG | 6 cut(s) | 225, 526, 692, 764, 1009, 1127 |
| HspAI | GCGC | 1 cut(s) | 628 |
| Kpn2I | TCCGGA | 1 cut(s) | 938 |
| Kzo9I | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| LguI | GCTCTTC | 2 cut(s) | 615, 690 |
| LmnI | GCTCC | 1 cut(s) | 875 |
| Lsp1109I | GCAGC | 3 cut(s) | 313, 375, 1045 |
| LweI | GCATC | 1 cut(s) | 957 |
| MaeI | CTAG | 4 cut(s) | 74, 786, 822, 905 |
| MaeIII | GTNAC | 5 cut(s) | 860, 995, 1090, 1126, 1142 |
| MalI | GATC | 7 cut(s) | 249, 380, 399, 507, 663, 700, 1198 |
| MbiI | CCGCTC | 1 cut(s) | 683 |
| MboI | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| MboII | GAAGA | 9 cut(s) | 312, 392, 602, 641, 677, 809, 867, 872, 1068 |
| MflI | RGATCY | 2 cut(s) | 378, 1196 |
| MhlI | GDGCHC | 1 cut(s) | 297 |
| MluCI | AATT | 5 cut(s) | 429, 450, 469, 853, 960 |
| MlyI | GAGTC | 3 cut(s) | 29, 590, 1123 |
| MmeI | TCCRAC | 1 cut(s) | 245 |
| Mph1103I | ATGCAT | 1 cut(s) | 528 |
| MroI | TCCGGA | 1 cut(s) | 938 |
| MroXI | GAANNNNTTC | 1 cut(s) | 609 |
| MseI | TTAA | 3 cut(s) | 216, 270, 453 |
| MslI | CAYNNNNRTG | 3 cut(s) | 521, 1010, 1052 |
| MspA1I | CMGCKG | 2 cut(s) | 326, 388 |
| MspI | CCGG | 1 cut(s) | 939 |
| MspR9I | CCNGG | 2 cut(s) | 744, 975 |
| MvaI | CCWGG | 2 cut(s) | 744, 975 |
| MvnI | CGCG | 3 cut(s) | 705, 750, 792 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 174, 689, 899, 954, 1058 |
| NdeII | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| NlaIII | CATG | 6 cut(s) | 225, 526, 692, 764, 1009, 1127 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 380, 796, 871, 1114 |
| NmuCI | GTSAC | 3 cut(s) | 860, 1090, 1126 |
| NsiI | ATGCAT | 1 cut(s) | 528 |
| PciSI | GCTCTTC | 2 cut(s) | 615, 690 |
| PdmI | GAANNNNTTC | 1 cut(s) | 609 |
| PfeI | GAWTC | 1 cut(s) | 338 |
| PfoI | TCCNGGA | 1 cut(s) | 973 |
| PkrI | GCNGC | 4 cut(s) | 131, 328, 390, 1060 |
| PleI | GAGTC | 3 cut(s) | 29, 590, 1123 |
| PpsI | GAGTC | 3 cut(s) | 29, 590, 1123 |
| PpuMI | RGGWCCY | 1 cut(s) | 795 |
| PshAI | GACNNNNGTC | 1 cut(s) | 554 |
| PshBI | ATTAAT | 2 cut(s) | 270, 453 |
| PsiI | TTATAA | 1 cut(s) | 1065 |
| Psp5II | RGGWCCY | 1 cut(s) | 795 |
| Psp6I | CCWGG | 2 cut(s) | 742, 973 |
| PspEI | GGTNACC | 1 cut(s) | 860 |
| PspGI | CCWGG | 2 cut(s) | 742, 973 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 380, 796, 871, 1114 |
| PspPI | GGNCC | 6 cut(s) | 4, 536, 722, 740, 795, 887 |
| PspPPI | RGGWCCY | 1 cut(s) | 795 |
| PsuI | RGATCY | 2 cut(s) | 378, 1196 |
| PvuII | CAGCTG | 1 cut(s) | 388 |
| RsaI | GTAC | 4 cut(s) | 157, 409, 421, 922 |
| RsaNI | GTAC | 4 cut(s) | 156, 408, 420, 921 |
| RseI | CAYNNNNRTG | 3 cut(s) | 521, 1010, 1052 |
| SapI | GCTCTTC | 2 cut(s) | 615, 690 |
| SaqAI | TTAA | 3 cut(s) | 216, 270, 453 |
| SatI | GCNGC | 4 cut(s) | 130, 327, 389, 1059 |
| Sau3AI | GATC | 7 cut(s) | 247, 378, 397, 505, 661, 698, 1196 |
| Sau96I | GGNCC | 6 cut(s) | 4, 536, 722, 740, 795, 887 |
| SchI | GAGTC | 3 cut(s) | 29, 590, 1123 |
| ScrFI | CCNGG | 2 cut(s) | 744, 975 |
| SduI | GDGCHC | 1 cut(s) | 297 |
| SfaNI | GCATC | 1 cut(s) | 957 |
| SfcI | CTRYAG | 1 cut(s) | 897 |
| SinI | GGWCC | 4 cut(s) | 536, 722, 795, 887 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 521, 1010, 1052 |
| Sse9I | AATT | 5 cut(s) | 429, 450, 469, 853, 960 |
| SsiI | CCGC | 6 cut(s) | 130, 324, 681, 705, 750, 792 |
| SspMI | CTAG | 4 cut(s) | 74, 786, 822, 905 |
| StyD4I | CCNGG | 2 cut(s) | 742, 973 |
| StyI | CCWWGG | 1 cut(s) | 342 |
| TaaI | ACNGT | 7 cut(s) | 214, 292, 304, 412, 556, 866, 1172 |
| TaqI | TCGA | 2 cut(s) | 299, 1176 |
| TasI | AATT | 5 cut(s) | 429, 450, 469, 853, 960 |
| TatI | WGTACW | 1 cut(s) | 920 |
| TauI | GCSGC | 1 cut(s) | 132 |
| TfiI | GAWTC | 1 cut(s) | 338 |
| Tru1I | TTAA | 3 cut(s) | 216, 270, 453 |
| Tru9I | TTAA | 3 cut(s) | 216, 270, 453 |
| TscAI | CASTG | 1 cut(s) | 1054 |
| TseFI | GTSAC | 3 cut(s) | 860, 1090, 1126 |
| TseI | GCWGC | 3 cut(s) | 326, 388, 1058 |
| Tsp45I | GTSAC | 3 cut(s) | 860, 1090, 1126 |
| TspDTI | ATGAA | 4 cut(s) | 243, 677, 923, 1022 |
| TspGWI | ACGGA | 2 cut(s) | 221, 395 |
| TspRI | CASTG | 1 cut(s) | 1054 |
| VpaK11BI | GGWCC | 4 cut(s) | 536, 722, 795, 887 |
| VspI | ATTAAT | 2 cut(s) | 270, 453 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1137 |
| XapI | RAATTY | 1 cut(s) | 960 |
| XmnI | GAANNNNTTC | 1 cut(s) | 609 |
| XspI | CTAG | 4 cut(s) | 74, 786, 822, 905 |
| Zsp2I | ATGCAT | 1 cut(s) | 528 |