transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 194 | 6.2e-23 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 867 |
| AcsI | RAATTY | 3 cut(s) | 104, 471, 581 |
| AcuI | CTGAAG | 2 cut(s) | 462, 1040 |
| AfaI | GTAC | 2 cut(s) | 223, 660 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 58 |
| AgsI | TTSAA | 8 cut(s) | 149, 349, 500, 598, 674, 905, 965, 1121 |
| AhlI | ACTAGT | 1 cut(s) | 1150 |
| AjnI | CCWGG | 1 cut(s) | 1270 |
| AluBI | AGCT | 7 cut(s) | 210, 434, 440, 872, 887, 1157, 1226 |
| AluI | AGCT | 7 cut(s) | 210, 434, 440, 872, 887, 1157, 1226 |
| Alw26I | GTCTC | 2 cut(s) | 138, 690 |
| AlwI | GGATC | 1 cut(s) | 867 |
| Ama87I | CYCGRG | 1 cut(s) | 1194 |
| ApeKI | GCWGC | 3 cut(s) | 434, 437, 1132 |
| ApoI | RAATTY | 3 cut(s) | 104, 471, 581 |
| AspS9I | GGNCC | 2 cut(s) | 561, 983 |
| AvaI | CYCGRG | 1 cut(s) | 1194 |
| AvaII | GGWCC | 2 cut(s) | 561, 983 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| BbvI | GCAGC | 3 cut(s) | 421, 449, 1144 |
| BccI | CCATC | 2 cut(s) | 107, 149 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1080, 1114 |
| BciT130I | CCWGG | 1 cut(s) | 1272 |
| BclI | TGATCA | 1 cut(s) | 457 |
| BcoDI | GTCTC | 2 cut(s) | 138, 690 |
| BcuI | ACTAGT | 1 cut(s) | 1150 |
| BfaI | CTAG | 5 cut(s) | 513, 690, 750, 1151, 1176 |
| BfmI | CTRYAG | 2 cut(s) | 387, 435 |
| BisI | GCNGC | 3 cut(s) | 435, 438, 1133 |
| BlsI | GCNGC | 3 cut(s) | 436, 439, 1134 |
| Bme1390I | CCNGG | 1 cut(s) | 1272 |
| Bme18I | GGWCC | 2 cut(s) | 561, 983 |
| BmeT110I | CYCGRG | 1 cut(s) | 1194 |
| BmgT120I | GGNCC | 2 cut(s) | 561, 983 |
| BmiI | GGNNCC | 1 cut(s) | 89 |
| BmrFI | CCNGG | 1 cut(s) | 1272 |
| BmsI | GCATC | 3 cut(s) | 60, 238, 1045 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 1 cut(s) | 1254 |
| Bsa29I | ATCGAT | 1 cut(s) | 1053 |
| BsaI | GGTCTC | 1 cut(s) | 690 |
| BsaJI | CCNNGG | 1 cut(s) | 91 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bse1I | ACTGG | 2 cut(s) | 634, 720 |
| Bse3DI | GCAATG | 1 cut(s) | 925 |
| BseBI | CCWGG | 1 cut(s) | 1272 |
| BseCI | ATCGAT | 1 cut(s) | 1053 |
| BseDI | CCNNGG | 1 cut(s) | 91 |
| BseGI | GGATG | 2 cut(s) | 275, 1255 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BseMI | GCAATG | 1 cut(s) | 925 |
| BseMII | CTCAG | 4 cut(s) | 149, 318, 1044, 1055 |
| BseNI | ACTGG | 2 cut(s) | 634, 720 |
| BseXI | GCAGC | 3 cut(s) | 421, 449, 1144 |
| BsgI | GTGCAG | 3 cut(s) | 597, 994, 1166 |
| Bsh1285I | CGRYCG | 1 cut(s) | 228 |
| BshVI | ATCGAT | 1 cut(s) | 1053 |
| BsiEI | CGRYCG | 1 cut(s) | 228 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1194 |
| BslFI | GGGAC | 2 cut(s) | 437, 1211 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BsmAI | GTCTC | 2 cut(s) | 138, 690 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 2 cut(s) | 437, 1211 |
| Bso31I | GGTCTC | 1 cut(s) | 690 |
| BsoBI | CYCGRG | 1 cut(s) | 1194 |
| Bsp143I | GATC | 3 cut(s) | 457, 859, 898 |
| Bsp19I | CCATGG | 1 cut(s) | 91 |
| BspCNI | CTCAG | 4 cut(s) | 148, 319, 1043, 1054 |
| BspDI | ATCGAT | 1 cut(s) | 1053 |
| BspLI | GGNNCC | 1 cut(s) | 89 |
| BspMAI | CTGCAG | 1 cut(s) | 439 |
| BspPI | GGATC | 1 cut(s) | 867 |
| BspTNI | GGTCTC | 1 cut(s) | 690 |
| BsrDI | GCAATG | 1 cut(s) | 925 |
| BsrI | ACTGG | 2 cut(s) | 634, 720 |
| BssECI | CCNNGG | 1 cut(s) | 91 |
| BssMI | GATC | 3 cut(s) | 457, 859, 898 |
| BssT1I | CCWWGG | 1 cut(s) | 91 |
| Bst2UI | CCWGG | 1 cut(s) | 1272 |
| Bst4CI | ACNGT | 3 cut(s) | 226, 658, 803 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 998 |
| BstDEI | CTNAG | 5 cut(s) | 135, 327, 825, 1030, 1041 |
| BstDSI | CCRYGG | 1 cut(s) | 91 |
| BstF5I | GGATG | 2 cut(s) | 275, 1255 |
| BstKTI | GATC | 3 cut(s) | 460, 862, 901 |
| BstMAI | GTCTC | 2 cut(s) | 138, 690 |
| BstMBI | GATC | 3 cut(s) | 457, 859, 898 |
| BstMCI | CGRYCG | 1 cut(s) | 228 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 187, 998 |
| BstNI | CCWGG | 1 cut(s) | 1272 |
| BstSCI | CCNGG | 1 cut(s) | 1270 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 435 |
| BstV1I | GCAGC | 3 cut(s) | 421, 449, 1144 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| Bsu15I | ATCGAT | 1 cut(s) | 1053 |
| BsuTUI | ATCGAT | 1 cut(s) | 1053 |
| BtgI | CCRYGG | 1 cut(s) | 91 |
| BtsCI | GGATG | 2 cut(s) | 275, 1255 |
| BtsIMutI | CAGTG | 2 cut(s) | 727, 808 |
| Cfr13I | GGNCC | 2 cut(s) | 561, 983 |
| ClaI | ATCGAT | 1 cut(s) | 1053 |
| Csp6I | GTAC | 2 cut(s) | 222, 659 |
| CviAII | CATG | 7 cut(s) | 26, 92, 451, 509, 759, 773, 838 |
| CviQI | GTAC | 2 cut(s) | 222, 659 |
| DdeI | CTNAG | 5 cut(s) | 135, 327, 825, 1030, 1041 |
| DpnI | GATC | 3 cut(s) | 459, 861, 900 |
| DpnII | GATC | 3 cut(s) | 457, 859, 898 |
| DraI | TTTAAA | 1 cut(s) | 412 |
| Eco130I | CCWWGG | 1 cut(s) | 91 |
| Eco31I | GGTCTC | 1 cut(s) | 690 |
| Eco47I | GGWCC | 2 cut(s) | 561, 983 |
| Eco57I | CTGAAG | 2 cut(s) | 462, 1040 |
| Eco88I | CYCGRG | 1 cut(s) | 1194 |
| EcoO109I | RGGNCCY | 2 cut(s) | 561, 983 |
| EcoRI | GAATTC | 1 cut(s) | 581 |
| EcoRII | CCWGG | 1 cut(s) | 1270 |
| EcoT14I | CCWWGG | 1 cut(s) | 91 |
| EcoT22I | ATGCAT | 2 cut(s) | 319, 822 |
| ErhI | CCWWGG | 1 cut(s) | 91 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 7 cut(s) | 29, 95, 454, 512, 762, 776, 841 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1077, 1109 |
| FaqI | GGGAC | 2 cut(s) | 437, 1211 |
| FatI | CATG | 7 cut(s) | 25, 91, 450, 508, 758, 772, 837 |
| FbaI | TGATCA | 1 cut(s) | 457 |
| Fnu4HI | GCNGC | 3 cut(s) | 435, 438, 1133 |
| FokI | GGATG | 2 cut(s) | 282, 1242 |
| Fsp4HI | GCNGC | 3 cut(s) | 435, 438, 1133 |
| FspBI | CTAG | 5 cut(s) | 513, 690, 750, 1151, 1176 |
| GluI | GCNGC | 3 cut(s) | 435, 438, 1133 |
| GsuI | CTGGAG | 1 cut(s) | 1254 |
| Hin1II | CATG | 7 cut(s) | 29, 95, 454, 512, 762, 776, 841 |
| HincII | GTYRAC | 1 cut(s) | 959 |
| HindII | GTYRAC | 1 cut(s) | 959 |
| HindIII | AAGCTT | 1 cut(s) | 1224 |
| HinfI | GANTC | 4 cut(s) | 383, 947, 977, 1232 |
| Hpy166II | GTNNAC | 2 cut(s) | 799, 959 |
| Hpy188III | TCNNGA | 7 cut(s) | 35, 461, 586, 857, 902, 981, 1196 |
| Hpy8I | GTNNAC | 2 cut(s) | 799, 959 |
| HpyAV | CCTTC | 1 cut(s) | 784 |
| HpyCH4III | ACNGT | 3 cut(s) | 226, 658, 803 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 187, 998 |
| HpyF3I | CTNAG | 5 cut(s) | 135, 327, 825, 1030, 1041 |
| Hsp92II | CATG | 7 cut(s) | 29, 95, 454, 512, 762, 776, 841 |
| Ksp22I | TGATCA | 1 cut(s) | 457 |
| Kzo9I | GATC | 3 cut(s) | 457, 859, 898 |
| LmnI | GCTCC | 3 cut(s) | 87, 199, 884 |
| Lsp1109I | GCAGC | 3 cut(s) | 421, 449, 1144 |
| LweI | GCATC | 3 cut(s) | 60, 238, 1045 |
| MaeI | CTAG | 5 cut(s) | 513, 690, 750, 1151, 1176 |
| MaeIII | GTNAC | 2 cut(s) | 445, 1033 |
| MalI | GATC | 3 cut(s) | 459, 861, 900 |
| MboI | GATC | 3 cut(s) | 457, 859, 898 |
| MboII | GAAGA | 5 cut(s) | 74, 161, 563, 877, 956 |
| MlyI | GAGTC | 1 cut(s) | 986 |
| MmeI | TCCRAC | 2 cut(s) | 177, 823 |
| MnlI | CCTC | 9 cut(s) | 276, 280, 399, 521, 631, 746, 1039, 1089, 1278 |
| Mph1103I | ATGCAT | 2 cut(s) | 319, 822 |
| MseI | TTAA | 8 cut(s) | 303, 411, 468, 572, 626, 746, 1046, 1074 |
| MspA1I | CMGCKG | 1 cut(s) | 440 |
| MspR9I | CCNGG | 1 cut(s) | 1272 |
| MvaI | CCWGG | 1 cut(s) | 1272 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 187, 998 |
| NcoI | CCATGG | 1 cut(s) | 91 |
| NdeII | GATC | 3 cut(s) | 457, 859, 898 |
| NlaIII | CATG | 7 cut(s) | 29, 95, 454, 512, 762, 776, 841 |
| NlaIV | GGNNCC | 1 cut(s) | 89 |
| NsiI | ATGCAT | 2 cut(s) | 319, 822 |
| PfeI | GAWTC | 3 cut(s) | 383, 947, 1232 |
| PkrI | GCNGC | 3 cut(s) | 436, 439, 1134 |
| PleI | GAGTC | 1 cut(s) | 985 |
| PpsI | GAGTC | 1 cut(s) | 985 |
| PpuMI | RGGWCCY | 2 cut(s) | 561, 983 |
| Psp5II | RGGWCCY | 2 cut(s) | 561, 983 |
| Psp6I | CCWGG | 1 cut(s) | 1270 |
| PspGI | CCWGG | 1 cut(s) | 1270 |
| PspN4I | GGNNCC | 1 cut(s) | 89 |
| PspPI | GGNCC | 2 cut(s) | 561, 983 |
| PspPPI | RGGWCCY | 2 cut(s) | 561, 983 |
| PstI | CTGCAG | 1 cut(s) | 439 |
| PvuII | CAGCTG | 1 cut(s) | 440 |
| RsaI | GTAC | 2 cut(s) | 223, 660 |
| RsaNI | GTAC | 2 cut(s) | 222, 659 |
| SaqAI | TTAA | 8 cut(s) | 303, 411, 468, 572, 626, 746, 1046, 1074 |
| SatI | GCNGC | 3 cut(s) | 435, 438, 1133 |
| Sau3AI | GATC | 3 cut(s) | 457, 859, 898 |
| Sau96I | GGNCC | 2 cut(s) | 561, 983 |
| SchI | GAGTC | 1 cut(s) | 986 |
| ScrFI | CCNGG | 1 cut(s) | 1272 |
| SfaNI | GCATC | 3 cut(s) | 60, 238, 1045 |
| SfcI | CTRYAG | 2 cut(s) | 387, 435 |
| SinI | GGWCC | 2 cut(s) | 561, 983 |
| SpeI | ACTAGT | 1 cut(s) | 1150 |
| SspMI | CTAG | 5 cut(s) | 513, 690, 750, 1151, 1176 |
| StyD4I | CCNGG | 1 cut(s) | 1270 |
| StyI | CCWWGG | 1 cut(s) | 91 |
| TaaI | ACNGT | 3 cut(s) | 226, 658, 803 |
| TaqI | TCGA | 4 cut(s) | 281, 585, 611, 1053 |
| TfiI | GAWTC | 3 cut(s) | 383, 947, 1232 |
| Tru1I | TTAA | 8 cut(s) | 303, 411, 468, 572, 626, 746, 1046, 1074 |
| Tru9I | TTAA | 8 cut(s) | 303, 411, 468, 572, 626, 746, 1046, 1074 |
| TscAI | CASTG | 2 cut(s) | 727, 808 |
| TseI | GCWGC | 3 cut(s) | 434, 437, 1132 |
| TspDTI | ATGAA | 7 cut(s) | 14, 54, 323, 467, 690, 926, 1226 |
| TspGWI | ACGGA | 1 cut(s) | 132 |
| TspRI | CASTG | 2 cut(s) | 727, 808 |
| VpaK11BI | GGWCC | 2 cut(s) | 561, 983 |
| XapI | RAATTY | 3 cut(s) | 104, 471, 581 |
| XspI | CTAG | 5 cut(s) | 513, 690, 750, 1151, 1176 |
| Zsp2I | ATGCAT | 2 cut(s) | 319, 822 |