Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 17 - 89 | 2.6e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 140 |
| AciI | CCGC | 1 cut(s) | 140 |
| AcoI | YGGCCR | 1 cut(s) | 111 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AgsI | TTSAA | 2 cut(s) | 13, 232 |
| AoxI | GGCC | 1 cut(s) | 111 |
| ApeKI | GCWGC | 1 cut(s) | 250 |
| AsuC2I | CCSGG | 1 cut(s) | 115 |
| AsuHPI | GGTGA | 2 cut(s) | 79, 136 |
| BbvCI | CCTCAGC | 1 cut(s) | 258 |
| BbvI | GCAGC | 1 cut(s) | 237 |
| BccI | CCATC | 1 cut(s) | 121 |
| BcnI | CCSGG | 1 cut(s) | 115 |
| BfmI | CTRYAG | 1 cut(s) | 38 |
| BisI | GCNGC | 1 cut(s) | 251 |
| BlsI | GCNGC | 1 cut(s) | 252 |
| Bme1390I | CCNGG | 1 cut(s) | 115 |
| BmrFI | CCNGG | 1 cut(s) | 115 |
| Bpu10I | CCTNAGC | 1 cut(s) | 258 |
| BpuMI | CCSGG | 1 cut(s) | 115 |
| BseMII | CTCAG | 2 cut(s) | 152, 249 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseXI | GCAGC | 1 cut(s) | 237 |
| Bsh1236I | CGCG | 1 cut(s) | 140 |
| BshFI | GGCC | 1 cut(s) | 113 |
| BsiSI | CCGG | 1 cut(s) | 114 |
| BsnI | GGCC | 1 cut(s) | 113 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspACI | CCGC | 1 cut(s) | 140 |
| BspANI | GGCC | 1 cut(s) | 113 |
| BspCNI | CTCAG | 2 cut(s) | 153, 250 |
| BspFNI | CGCG | 1 cut(s) | 140 |
| BspMAI | CTGCAG | 1 cut(s) | 42 |
| BssMI | GATC | 1 cut(s) | 34 |
| BstC8I | GCNNGC | 2 cut(s) | 156, 255 |
| BstDEI | CTNAG | 2 cut(s) | 161, 258 |
| BstFNI | CGCG | 1 cut(s) | 140 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 263 |
| BstNSI | RCATGY | 1 cut(s) | 158 |
| BstSCI | CCNGG | 1 cut(s) | 113 |
| BstSFI | CTRYAG | 1 cut(s) | 38 |
| BstUI | CGCG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 1 cut(s) | 237 |
| BsuRI | GGCC | 1 cut(s) | 113 |
| BtsI | GCAGTG | 1 cut(s) | 221 |
| BtsIMutI | CAGTG | 1 cut(s) | 221 |
| Cac8I | GCNNGC | 2 cut(s) | 156, 255 |
| CseI | GACGC | 1 cut(s) | 146 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 210, 245 |
| CviAII | CATG | 1 cut(s) | 155 |
| CviJI | RGCY | 4 cut(s) | 113, 220, 257, 266 |
| CviKI_1 | RGCY | 4 cut(s) | 113, 220, 257, 266 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 2 cut(s) | 161, 258 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| EaeI | YGGCCR | 1 cut(s) | 111 |
| FaeI | CATG | 1 cut(s) | 158 |
| FaiI | YATR | 4 cut(s) | 78, 156, 183, 243 |
| FatI | CATG | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 1 cut(s) | 251 |
| Fsp4HI | GCNGC | 1 cut(s) | 251 |
| GluI | GCNGC | 1 cut(s) | 251 |
| HaeIII | GGCC | 1 cut(s) | 113 |
| HapII | CCGG | 1 cut(s) | 114 |
| HgaI | GACGC | 1 cut(s) | 146 |
| Hin1II | CATG | 1 cut(s) | 158 |
| HinfI | GANTC | 2 cut(s) | 62, 283 |
| HpaII | CCGG | 1 cut(s) | 114 |
| HphI | GGTGA | 2 cut(s) | 79, 136 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 162 |
| Hpy188III | TCNNGA | 1 cut(s) | 19 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| Hpy99I | CGWCG | 2 cut(s) | 140, 211 |
| HpyCH4V | TGCA | 1 cut(s) | 40 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 263 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 258 |
| Hsp92II | CATG | 1 cut(s) | 158 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LpnPI | CCDG | 4 cut(s) | 127, 186, 239, 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 237 |
| MalI | GATC | 1 cut(s) | 36 |
| MboI | GATC | 1 cut(s) | 34 |
| MluCI | AATT | 1 cut(s) | 7 |
| MlyI | GAGTC | 1 cut(s) | 56 |
| MnlI | CCTC | 8 cut(s) | 50, 78, 156, 169, 178, 204, 253, 256 |
| MspI | CCGG | 1 cut(s) | 114 |
| MspR9I | CCNGG | 1 cut(s) | 115 |
| MvnI | CGCG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 263 |
| NciI | CCSGG | 1 cut(s) | 115 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIII | CATG | 1 cut(s) | 158 |
| NspI | RCATGY | 1 cut(s) | 158 |
| PaeI | GCATGC | 1 cut(s) | 158 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 206 |
| PfeI | GAWTC | 1 cut(s) | 283 |
| PkrI | GCNGC | 1 cut(s) | 252 |
| PleI | GAGTC | 1 cut(s) | 56 |
| PpsI | GAGTC | 1 cut(s) | 56 |
| PstI | CTGCAG | 1 cut(s) | 42 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| SatI | GCNGC | 1 cut(s) | 251 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| SchI | GAGTC | 1 cut(s) | 56 |
| ScrFI | CCNGG | 1 cut(s) | 115 |
| SfcI | CTRYAG | 1 cut(s) | 38 |
| SphI | GCATGC | 1 cut(s) | 158 |
| Sse9I | AATT | 1 cut(s) | 7 |
| SsiI | CCGC | 1 cut(s) | 140 |
| StyD4I | CCNGG | 1 cut(s) | 113 |
| TaqI | TCGA | 1 cut(s) | 200 |
| TasI | AATT | 1 cut(s) | 7 |
| TatI | WGTACW | 1 cut(s) | 24 |
| TfiI | GAWTC | 1 cut(s) | 283 |
| TscAI | CASTG | 1 cut(s) | 228 |
| TseI | GCWGC | 1 cut(s) | 250 |
| TspRI | CASTG | 1 cut(s) | 228 |
| XceI | RCATGY | 1 cut(s) | 158 |