gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 273, 287 |
| AccB1I | GGYRCC | 2 cut(s) | 448, 536 |
| AclWI | GGATC | 2 cut(s) | 29, 368 |
| AcuI | CTGAAG | 1 cut(s) | 208 |
| AfaI | GTAC | 2 cut(s) | 518, 648 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 53 |
| AgsI | TTSAA | 8 cut(s) | 25, 133, 163, 184, 205, 325, 566, 611 |
| AluBI | AGCT | 4 cut(s) | 77, 105, 272, 506 |
| AluI | AGCT | 4 cut(s) | 77, 105, 272, 506 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| Alw26I | GTCTC | 1 cut(s) | 291 |
| AlwI | GGATC | 2 cut(s) | 29, 368 |
| ApeKI | GCWGC | 3 cut(s) | 491, 494, 506 |
| BanI | GGYRCC | 2 cut(s) | 448, 536 |
| BanII | GRGCYC | 1 cut(s) | 79 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BbvI | GCAGC | 3 cut(s) | 478, 481, 493 |
| BccI | CCATC | 2 cut(s) | 25, 242 |
| BcoDI | GTCTC | 1 cut(s) | 291 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BfmI | CTRYAG | 2 cut(s) | 280, 372 |
| BfuAI | ACCTGC | 2 cut(s) | 273, 287 |
| BisI | GCNGC | 3 cut(s) | 492, 495, 507 |
| BlsI | GCNGC | 3 cut(s) | 493, 496, 508 |
| BmcAI | AGTACT | 1 cut(s) | 518 |
| BmiI | GGNNCC | 2 cut(s) | 450, 538 |
| BmsI | GCATC | 2 cut(s) | 371, 592 |
| BpuEI | CTTGAG | 2 cut(s) | 438, 486 |
| BsaI | GGTCTC | 1 cut(s) | 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 53 |
| Bse1I | ACTGG | 3 cut(s) | 58, 478, 524 |
| Bse3DI | GCAATG | 2 cut(s) | 157, 489 |
| BseGI | GGATG | 2 cut(s) | 17, 297 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BseMI | GCAATG | 2 cut(s) | 157, 489 |
| BseMII | CTCAG | 2 cut(s) | 527, 648 |
| BseNI | ACTGG | 3 cut(s) | 58, 478, 524 |
| BseRI | GAGGAG | 1 cut(s) | 501 |
| BseXI | GCAGC | 3 cut(s) | 478, 481, 493 |
| BshNI | GGYRCC | 2 cut(s) | 448, 536 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BsmAI | GTCTC | 1 cut(s) | 291 |
| Bso31I | GGTCTC | 1 cut(s) | 291 |
| Bsp1286I | GDGCHC | 1 cut(s) | 79 |
| Bsp1407I | TGTACA | 1 cut(s) | 646 |
| Bsp143I | GATC | 2 cut(s) | 34, 360 |
| BspCNI | CTCAG | 2 cut(s) | 526, 649 |
| BspLI | GGNNCC | 2 cut(s) | 450, 538 |
| BspMAI | CTGCAG | 2 cut(s) | 284, 376 |
| BspMI | ACCTGC | 2 cut(s) | 273, 287 |
| BspPI | GGATC | 2 cut(s) | 29, 368 |
| BspT107I | GGYRCC | 2 cut(s) | 448, 536 |
| BspTNI | GGTCTC | 1 cut(s) | 291 |
| BsrDI | GCAATG | 2 cut(s) | 157, 489 |
| BsrGI | TGTACA | 1 cut(s) | 646 |
| BsrI | ACTGG | 3 cut(s) | 58, 478, 524 |
| BssMI | GATC | 2 cut(s) | 34, 360 |
| Bst4CI | ACNGT | 1 cut(s) | 646 |
| BstAUI | TGTACA | 1 cut(s) | 646 |
| BstC8I | GCNNGC | 4 cut(s) | 157, 178, 220, 525 |
| BstDEI | CTNAG | 2 cut(s) | 513, 657 |
| BstF5I | GGATG | 2 cut(s) | 17, 297 |
| BstKTI | GATC | 2 cut(s) | 37, 363 |
| BstMAI | GTCTC | 1 cut(s) | 291 |
| BstMBI | GATC | 2 cut(s) | 34, 360 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 102, 126, 156, 440, 455, 488, 503 |
| BstSFI | CTRYAG | 2 cut(s) | 280, 372 |
| BstV1I | GCAGC | 3 cut(s) | 478, 481, 493 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 251 |
| BtsCI | GGATG | 2 cut(s) | 17, 297 |
| BtsI | GCAGTG | 1 cut(s) | 450 |
| BtsIMutI | CAGTG | 1 cut(s) | 450 |
| BveI | ACCTGC | 2 cut(s) | 273, 287 |
| Cac8I | GCNNGC | 4 cut(s) | 157, 178, 220, 525 |
| Csp6I | GTAC | 2 cut(s) | 517, 647 |
| CviAII | CATG | 3 cut(s) | 266, 466, 550 |
| CviQI | GTAC | 2 cut(s) | 517, 647 |
| DdeI | CTNAG | 2 cut(s) | 513, 657 |
| DpnI | GATC | 2 cut(s) | 36, 362 |
| DpnII | GATC | 2 cut(s) | 34, 360 |
| Ecl136II | GAGCTC | 1 cut(s) | 77 |
| Eco24I | GRGCYC | 1 cut(s) | 79 |
| Eco31I | GGTCTC | 1 cut(s) | 291 |
| Eco53kI | GAGCTC | 1 cut(s) | 77 |
| Eco57I | CTGAAG | 1 cut(s) | 208 |
| EcoICRI | GAGCTC | 1 cut(s) | 77 |
| EcoT38I | GRGCYC | 1 cut(s) | 79 |
| FaeI | CATG | 3 cut(s) | 269, 469, 553 |
| FatI | CATG | 3 cut(s) | 265, 465, 549 |
| FauNDI | CATATG | 2 cut(s) | 7, 239 |
| Fnu4HI | GCNGC | 3 cut(s) | 492, 495, 507 |
| FokI | GGATG | 2 cut(s) | 4, 284 |
| FriOI | GRGCYC | 1 cut(s) | 79 |
| Fsp4HI | GCNGC | 3 cut(s) | 492, 495, 507 |
| FspBI | CTAG | 1 cut(s) | 273 |
| GluI | GCNGC | 3 cut(s) | 492, 495, 507 |
| Hin1II | CATG | 3 cut(s) | 269, 469, 553 |
| HinfI | GANTC | 1 cut(s) | 304 |
| Hpy188I | TCNGA | 2 cut(s) | 227, 330 |
| Hpy188III | TCNNGA | 1 cut(s) | 301 |
| HpyAV | CCTTC | 2 cut(s) | 31, 63 |
| HpyCH4III | ACNGT | 1 cut(s) | 646 |
| HpyCH4V | TGCA | 9 cut(s) | 155, 176, 218, 282, 374, 482, 497, 599, 605 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 102, 126, 156, 440, 455, 488, 503 |
| HpyF3I | CTNAG | 2 cut(s) | 513, 657 |
| Hsp92II | CATG | 3 cut(s) | 269, 469, 553 |
| Kzo9I | GATC | 2 cut(s) | 34, 360 |
| LmnI | GCTCC | 5 cut(s) | 74, 82, 269, 514, 589 |
| Lsp1109I | GCAGC | 3 cut(s) | 478, 481, 493 |
| LweI | GCATC | 2 cut(s) | 371, 592 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MalI | GATC | 2 cut(s) | 36, 362 |
| MboI | GATC | 2 cut(s) | 34, 360 |
| MboII | GAAGA | 1 cut(s) | 267 |
| MhlI | GDGCHC | 1 cut(s) | 79 |
| MnlI | CCTC | 4 cut(s) | 140, 332, 462, 522 |
| MseI | TTAA | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 102, 126, 156, 440, 455, 488, 503 |
| NdeI | CATATG | 2 cut(s) | 7, 239 |
| NdeII | GATC | 2 cut(s) | 34, 360 |
| NlaIII | CATG | 3 cut(s) | 269, 469, 553 |
| NlaIV | GGNNCC | 2 cut(s) | 450, 538 |
| PfeI | GAWTC | 1 cut(s) | 304 |
| PkrI | GCNGC | 3 cut(s) | 493, 496, 508 |
| Psp124BI | GAGCTC | 1 cut(s) | 79 |
| PspN4I | GGNNCC | 2 cut(s) | 450, 538 |
| PstI | CTGCAG | 2 cut(s) | 284, 376 |
| RsaI | GTAC | 2 cut(s) | 518, 648 |
| RsaNI | GTAC | 2 cut(s) | 517, 647 |
| SacI | GAGCTC | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 3 cut(s) | 492, 495, 507 |
| Sau3AI | GATC | 2 cut(s) | 34, 360 |
| SbfI | CCTGCAGG | 1 cut(s) | 284 |
| ScaI | AGTACT | 1 cut(s) | 518 |
| SdaI | CCTGCAGG | 1 cut(s) | 284 |
| SduI | GDGCHC | 1 cut(s) | 79 |
| SetI | ASST | 9 cut(s) | 79, 107, 274, 281, 287, 454, 508, 538, 631 |
| SfaNI | GCATC | 2 cut(s) | 371, 592 |
| SfcI | CTRYAG | 2 cut(s) | 280, 372 |
| SmlI | CTYRAG | 2 cut(s) | 453, 501 |
| SmoI | CTYRAG | 2 cut(s) | 453, 501 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 284 |
| SspMI | CTAG | 1 cut(s) | 273 |
| SstI | GAGCTC | 1 cut(s) | 79 |
| TaaI | ACNGT | 1 cut(s) | 646 |
| TatI | WGTACW | 2 cut(s) | 516, 646 |
| TfiI | GAWTC | 1 cut(s) | 304 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TscAI | CASTG | 1 cut(s) | 450 |
| TseI | GCWGC | 3 cut(s) | 491, 494, 506 |
| TspDTI | ATGAA | 1 cut(s) | 573 |
| TspRI | CASTG | 1 cut(s) | 450 |
| XspI | CTAG | 1 cut(s) | 273 |
| ZrmI | AGTACT | 1 cut(s) | 518 |