Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_3 | PF14244 | 24 - 63 | 9.3e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 11 |
| AccI | GTMKAC | 2 cut(s) | 54, 165 |
| AccII | CGCG | 1 cut(s) | 227 |
| AciI | CCGC | 4 cut(s) | 6, 9, 182, 225 |
| AclWI | GGATC | 1 cut(s) | 277 |
| AcoI | YGGCCR | 3 cut(s) | 3, 222, 336 |
| AcyI | GRCGYC | 3 cut(s) | 41, 207, 264 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 26 |
| AgsI | TTSAA | 2 cut(s) | 139, 365 |
| AjnI | CCWGG | 1 cut(s) | 248 |
| AluBI | AGCT | 1 cut(s) | 143 |
| AluI | AGCT | 1 cut(s) | 143 |
| Alw26I | GTCTC | 3 cut(s) | 77, 239, 361 |
| AlwI | GGATC | 1 cut(s) | 277 |
| AoxI | GGCC | 3 cut(s) | 3, 222, 336 |
| ApeKI | GCWGC | 1 cut(s) | 327 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 372 |
| AsuHPI | GGTGA | 2 cut(s) | 9, 97 |
| BbvI | GCAGC | 1 cut(s) | 314 |
| BccI | CCATC | 5 cut(s) | 71, 116, 182, 247, 268 |
| BceAI | ACGGC | 3 cut(s) | 184, 237, 351 |
| BciT130I | CCWGG | 1 cut(s) | 250 |
| BcoDI | GTCTC | 3 cut(s) | 77, 239, 361 |
| BisI | GCNGC | 5 cut(s) | 6, 9, 182, 225, 328 |
| BlsI | GCNGC | 5 cut(s) | 7, 10, 183, 226, 329 |
| Bme1390I | CCNGG | 1 cut(s) | 250 |
| BmiI | GGNNCC | 1 cut(s) | 172 |
| BmrFI | CCNGG | 1 cut(s) | 250 |
| BpmI | CTGGAG | 1 cut(s) | 52 |
| BsaHI | GRCGYC | 3 cut(s) | 41, 207, 264 |
| BsaI | GGTCTC | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 1 cut(s) | 154 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 26 |
| Bse118I | RCCGGY | 1 cut(s) | 266 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| BseBI | CCWGG | 1 cut(s) | 250 |
| BseDI | CCNNGG | 1 cut(s) | 154 |
| BseGI | GGATG | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 2 cut(s) | 85, 143 |
| BseX3I | CGGCCG | 1 cut(s) | 222 |
| BseXI | GCAGC | 1 cut(s) | 314 |
| Bsh1236I | CGCG | 1 cut(s) | 227 |
| Bsh1285I | CGRYCG | 1 cut(s) | 225 |
| BshFI | GGCC | 3 cut(s) | 5, 224, 338 |
| BsiEI | CGRYCG | 1 cut(s) | 225 |
| BsiSI | CCGG | 5 cut(s) | 27, 44, 185, 210, 267 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BsmAI | GTCTC | 3 cut(s) | 77, 239, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| BsnI | GGCC | 3 cut(s) | 5, 224, 338 |
| Bso31I | GGTCTC | 1 cut(s) | 239 |
| Bsp143I | GATC | 2 cut(s) | 228, 282 |
| BspACI | CCGC | 4 cut(s) | 6, 9, 182, 225 |
| BspANI | GGCC | 3 cut(s) | 5, 224, 338 |
| BspFNI | CGCG | 1 cut(s) | 227 |
| BspLI | GGNNCC | 1 cut(s) | 172 |
| BspPI | GGATC | 1 cut(s) | 277 |
| BspTNI | GGTCTC | 1 cut(s) | 239 |
| BsrBI | CCGCTC | 1 cut(s) | 11 |
| BsrFI | RCCGGY | 1 cut(s) | 266 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssAI | RCCGGY | 1 cut(s) | 266 |
| BssECI | CCNNGG | 1 cut(s) | 154 |
| BssMI | GATC | 2 cut(s) | 228, 282 |
| BssNI | GRCGYC | 3 cut(s) | 41, 207, 264 |
| Bst2UI | CCWGG | 1 cut(s) | 250 |
| BstACI | GRCGYC | 3 cut(s) | 41, 207, 264 |
| BstC8I | GCNNGC | 1 cut(s) | 268 |
| BstF5I | GGATG | 1 cut(s) | 258 |
| BstFNI | CGCG | 1 cut(s) | 227 |
| BstKTI | GATC | 2 cut(s) | 231, 285 |
| BstMAI | GTCTC | 3 cut(s) | 77, 239, 361 |
| BstMBI | GATC | 2 cut(s) | 228, 282 |
| BstMCI | CGRYCG | 1 cut(s) | 225 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 263 |
| BstNI | CCWGG | 1 cut(s) | 250 |
| BstSCI | CCNGG | 1 cut(s) | 248 |
| BstUI | CGCG | 1 cut(s) | 227 |
| BstV1I | GCAGC | 1 cut(s) | 314 |
| BstZI | CGGCCG | 1 cut(s) | 222 |
| BsuRI | GGCC | 3 cut(s) | 5, 224, 338 |
| BtsCI | GGATG | 1 cut(s) | 258 |
| Cac8I | GCNNGC | 1 cut(s) | 268 |
| Cfr10I | RCCGGY | 1 cut(s) | 266 |
| CseI | GACGC | 3 cut(s) | 49, 215, 272 |
| DpnI | GATC | 2 cut(s) | 230, 284 |
| DpnII | GATC | 2 cut(s) | 228, 282 |
| EaeI | YGGCCR | 3 cut(s) | 3, 222, 336 |
| EagI | CGGCCG | 1 cut(s) | 222 |
| EclXI | CGGCCG | 1 cut(s) | 222 |
| Eco31I | GGTCTC | 1 cut(s) | 239 |
| Eco52I | CGGCCG | 1 cut(s) | 222 |
| EcoRII | CCWGG | 1 cut(s) | 248 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaiI | YATR | 3 cut(s) | 77, 83, 134 |
| FblI | GTMKAC | 2 cut(s) | 54, 165 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 9, 182, 225, 328 |
| FokI | GGATG | 1 cut(s) | 265 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 9, 182, 225, 328 |
| GluI | GCNGC | 5 cut(s) | 6, 9, 182, 225, 328 |
| GsuI | CTGGAG | 1 cut(s) | 52 |
| HaeIII | GGCC | 3 cut(s) | 5, 224, 338 |
| HapII | CCGG | 5 cut(s) | 27, 44, 185, 210, 267 |
| HgaI | GACGC | 3 cut(s) | 49, 215, 272 |
| Hin1I | GRCGYC | 3 cut(s) | 41, 207, 264 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HinfI | GANTC | 2 cut(s) | 87, 92 |
| HpaII | CCGG | 5 cut(s) | 27, 44, 185, 210, 267 |
| HphI | GGTGA | 2 cut(s) | 9, 97 |
| Hpy166II | GTNNAC | 2 cut(s) | 55, 166 |
| Hpy188I | TCNGA | 2 cut(s) | 123, 392 |
| Hpy188III | TCNNGA | 4 cut(s) | 112, 199, 260, 377 |
| Hpy8I | GTNNAC | 2 cut(s) | 55, 166 |
| Hpy99I | CGWCG | 5 cut(s) | 167, 170, 209, 223, 266 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 162 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 263 |
| HpySE526I | ACGT | 2 cut(s) | 48, 162 |
| Hsp92I | GRCGYC | 3 cut(s) | 41, 207, 264 |
| KroI | GCCGGC | 1 cut(s) | 266 |
| KroNI | GCCGGC | 1 cut(s) | 268 |
| Kzo9I | GATC | 2 cut(s) | 228, 282 |
| LmnI | GCTCC | 2 cut(s) | 16, 176 |
| LpnPI | CCDG | 9 cut(s) | 40, 57, 82, 198, 223, 235, 262, 280, 371 |
| Lsp1109I | GCAGC | 1 cut(s) | 314 |
| MaeII | ACGT | 2 cut(s) | 48, 162 |
| MaeIII | GTNAC | 2 cut(s) | 15, 312 |
| MalI | GATC | 2 cut(s) | 230, 284 |
| MbiI | CCGCTC | 1 cut(s) | 11 |
| MboI | GATC | 2 cut(s) | 228, 282 |
| MluCI | AATT | 1 cut(s) | 347 |
| MlyI | GAGTC | 2 cut(s) | 81, 86 |
| MmeI | TCCRAC | 2 cut(s) | 123, 324 |
| MnlI | CCTC | 4 cut(s) | 34, 106, 164, 206 |
| MreI | CGCCGGCG | 1 cut(s) | 266 |
| MroNI | GCCGGC | 1 cut(s) | 266 |
| MspI | CCGG | 5 cut(s) | 27, 44, 185, 210, 267 |
| MspR9I | CCNGG | 1 cut(s) | 250 |
| MvaI | CCWGG | 1 cut(s) | 250 |
| MvnI | CGCG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 263 |
| NaeI | GCCGGC | 1 cut(s) | 268 |
| NdeII | GATC | 2 cut(s) | 228, 282 |
| NgoMIV | GCCGGC | 1 cut(s) | 266 |
| NlaIV | GGNNCC | 1 cut(s) | 172 |
| NmeAIII | GCCGAG | 2 cut(s) | 135, 284 |
| NmuCI | GTSAC | 2 cut(s) | 15, 312 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 162, 267 |
| PdiI | GCCGGC | 1 cut(s) | 268 |
| PflFI | GACNNNGTC | 1 cut(s) | 50 |
| PkrI | GCNGC | 5 cut(s) | 7, 10, 183, 226, 329 |
| PleI | GAGTC | 2 cut(s) | 81, 86 |
| PpsI | GAGTC | 2 cut(s) | 81, 86 |
| Psp6I | CCWGG | 1 cut(s) | 248 |
| PspGI | CCWGG | 1 cut(s) | 248 |
| PspN4I | GGNNCC | 1 cut(s) | 172 |
| PsyI | GACNNNGTC | 1 cut(s) | 50 |
| SalI | GTCGAC | 1 cut(s) | 164 |
| SatI | GCNGC | 5 cut(s) | 6, 9, 182, 225, 328 |
| Sau3AI | GATC | 2 cut(s) | 228, 282 |
| SchI | GAGTC | 2 cut(s) | 81, 86 |
| ScrFI | CCNGG | 1 cut(s) | 250 |
| SetI | ASST | 6 cut(s) | 26, 51, 145, 165, 251, 390 |
| SgrAI | CRCCGGYG | 1 cut(s) | 266 |
| SgrDI | CGTCGACG | 1 cut(s) | 164 |
| Sse9I | AATT | 1 cut(s) | 347 |
| SsiI | CCGC | 4 cut(s) | 6, 9, 182, 225 |
| StyD4I | CCNGG | 1 cut(s) | 248 |
| TaiI | ACGT | 2 cut(s) | 51, 165 |
| TaqI | TCGA | 3 cut(s) | 90, 113, 165 |
| TasI | AATT | 1 cut(s) | 347 |
| TauI | GCSGC | 4 cut(s) | 8, 11, 184, 227 |
| TseFI | GTSAC | 2 cut(s) | 15, 312 |
| TseI | GCWGC | 1 cut(s) | 327 |
| Tsp45I | GTSAC | 2 cut(s) | 15, 312 |
| Tth111I | GACNNNGTC | 1 cut(s) | 50 |
| XmiI | GTMKAC | 2 cut(s) | 54, 165 |