gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 188 |
| AccB1I | GGYRCC | 1 cut(s) | 188 |
| AccI | GTMKAC | 1 cut(s) | 317 |
| AciI | CCGC | 1 cut(s) | 230 |
| AclWI | GGATC | 3 cut(s) | 268, 273, 293 |
| AcoI | YGGCCR | 1 cut(s) | 231 |
| AcuI | CTGAAG | 1 cut(s) | 684 |
| AfaI | GTAC | 3 cut(s) | 57, 190, 661 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 393, 536, 690 |
| AgsI | TTSAA | 3 cut(s) | 260, 440, 476 |
| AjiI | CACGTC | 2 cut(s) | 384, 599 |
| AjnI | CCWGG | 2 cut(s) | 251, 350 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 277, 309 |
| AluBI | AGCT | 1 cut(s) | 479 |
| AluI | AGCT | 1 cut(s) | 479 |
| AlwI | GGATC | 3 cut(s) | 268, 273, 293 |
| AoxI | GGCC | 1 cut(s) | 231 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 480, 627 |
| Asp718I | GGTACC | 1 cut(s) | 188 |
| AspS9I | GGNCC | 1 cut(s) | 539 |
| AsuHPI | GGTGA | 1 cut(s) | 198 |
| AvaII | GGWCC | 1 cut(s) | 539 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 172, 180, 205, 213 |
| BanI | GGYRCC | 1 cut(s) | 188 |
| BauI | CACGAG | 2 cut(s) | 618, 654 |
| BbsI | GAAGAC | 1 cut(s) | 690 |
| BccI | CCATC | 8 cut(s) | 20, 70, 158, 211, 313, 499, 550, 588 |
| BceAI | ACGGC | 1 cut(s) | 507 |
| BciT130I | CCWGG | 2 cut(s) | 253, 352 |
| BfaI | CTAG | 2 cut(s) | 327, 730 |
| BisI | GCNGC | 1 cut(s) | 231 |
| BlsI | GCNGC | 1 cut(s) | 232 |
| Bme1390I | CCNGG | 2 cut(s) | 253, 352 |
| Bme18I | GGWCC | 1 cut(s) | 539 |
| BmgBI | CACGTC | 2 cut(s) | 384, 599 |
| BmgT120I | GGNCC | 1 cut(s) | 539 |
| BmiI | GGNNCC | 1 cut(s) | 190 |
| BmrFI | CCNGG | 2 cut(s) | 253, 352 |
| BmsI | GCATC | 2 cut(s) | 516, 713 |
| BpiI | GAAGAC | 1 cut(s) | 690 |
| BpmI | CTGGAG | 1 cut(s) | 240 |
| Bsa29I | ATCGAT | 1 cut(s) | 112 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 393, 536, 690 |
| Bse1I | ACTGG | 1 cut(s) | 223 |
| BseBI | CCWGG | 2 cut(s) | 253, 352 |
| BseCI | ATCGAT | 1 cut(s) | 112 |
| BseGI | GGATG | 4 cut(s) | 150, 305, 347, 580 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 393, 536, 690 |
| BseMII | CTCAG | 2 cut(s) | 146, 686 |
| BseNI | ACTGG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 657 |
| BshFI | GGCC | 1 cut(s) | 233 |
| BshNI | GGYRCC | 1 cut(s) | 188 |
| BshVI | ATCGAT | 1 cut(s) | 112 |
| BslFI | GGGAC | 1 cut(s) | 370 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 393, 536, 690 |
| BsmFI | GGGAC | 1 cut(s) | 370 |
| BsmI | GAATGC | 1 cut(s) | 343 |
| BsnI | GGCC | 1 cut(s) | 233 |
| Bsp143I | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| BspACI | CCGC | 1 cut(s) | 230 |
| BspANI | GGCC | 1 cut(s) | 233 |
| BspCNI | CTCAG | 2 cut(s) | 147, 685 |
| BspDI | ATCGAT | 1 cut(s) | 112 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 190 |
| BspPI | GGATC | 3 cut(s) | 268, 273, 293 |
| BspQI | GCTCTTC | 1 cut(s) | 486 |
| BspT107I | GGYRCC | 1 cut(s) | 188 |
| BsrI | ACTGG | 1 cut(s) | 223 |
| BssMI | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| BssSI | CACGAG | 2 cut(s) | 618, 654 |
| Bst2BI | CACGAG | 2 cut(s) | 618, 654 |
| Bst2UI | CCWGG | 2 cut(s) | 253, 352 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 188, 572 |
| Bst6I | CTCTTC | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 1 cut(s) | 357 |
| BstDEI | CTNAG | 4 cut(s) | 155, 278, 361, 672 |
| BstF5I | GGATG | 4 cut(s) | 150, 305, 347, 580 |
| BstKTI | GATC | 6 cut(s) | 112, 116, 144, 268, 276, 288 |
| BstMBI | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 239, 554 |
| BstNI | CCWGG | 2 cut(s) | 253, 352 |
| BstSCI | CCNGG | 2 cut(s) | 251, 350 |
| BstV2I | GAAGAC | 1 cut(s) | 690 |
| Bsu15I | ATCGAT | 1 cut(s) | 112 |
| BsuRI | GGCC | 1 cut(s) | 233 |
| BsuTUI | ATCGAT | 1 cut(s) | 112 |
| BtrI | CACGTC | 2 cut(s) | 384, 599 |
| BtsCI | GGATG | 4 cut(s) | 150, 305, 347, 580 |
| BtsI | GCAGTG | 1 cut(s) | 225 |
| BtsIMutI | CAGTG | 2 cut(s) | 21, 225 |
| Cac8I | GCNNGC | 1 cut(s) | 357 |
| CciI | TCATGA | 1 cut(s) | 445 |
| Cfr13I | GGNCC | 1 cut(s) | 539 |
| ClaI | ATCGAT | 1 cut(s) | 112 |
| Csp6I | GTAC | 3 cut(s) | 56, 189, 660 |
| CviAII | CATG | 4 cut(s) | 82, 172, 430, 446 |
| CviJI | RGCY | 8 cut(s) | 133, 233, 359, 479, 494, 548, 627, 710 |
| CviKI_1 | RGCY | 8 cut(s) | 133, 233, 359, 479, 494, 548, 627, 710 |
| CviQI | GTAC | 3 cut(s) | 56, 189, 660 |
| DdeI | CTNAG | 4 cut(s) | 155, 278, 361, 672 |
| DpnI | GATC | 6 cut(s) | 111, 115, 143, 267, 275, 287 |
| DpnII | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| EaeI | YGGCCR | 1 cut(s) | 231 |
| Eam1104I | CTCTTC | 1 cut(s) | 486 |
| EarI | CTCTTC | 1 cut(s) | 486 |
| Eco47I | GGWCC | 1 cut(s) | 539 |
| Eco57I | CTGAAG | 1 cut(s) | 684 |
| EcoRII | CCWGG | 2 cut(s) | 251, 350 |
| FaeI | CATG | 4 cut(s) | 85, 175, 433, 449 |
| FaiI | YATR | 8 cut(s) | 83, 173, 244, 375, 431, 447, 465, 678 |
| FaqI | GGGAC | 1 cut(s) | 370 |
| FatI | CATG | 4 cut(s) | 81, 171, 429, 445 |
| FblI | GTMKAC | 1 cut(s) | 317 |
| Fnu4HI | GCNGC | 1 cut(s) | 231 |
| FokI | GGATG | 4 cut(s) | 137, 292, 334, 567 |
| Fsp4HI | GCNGC | 1 cut(s) | 231 |
| FspBI | CTAG | 2 cut(s) | 327, 730 |
| GluI | GCNGC | 1 cut(s) | 231 |
| GsuI | CTGGAG | 1 cut(s) | 240 |
| HaeIII | GGCC | 1 cut(s) | 233 |
| Hin1II | CATG | 4 cut(s) | 85, 175, 433, 449 |
| HincII | GTYRAC | 1 cut(s) | 669 |
| HindII | GTYRAC | 1 cut(s) | 669 |
| HinfI | GANTC | 2 cut(s) | 256, 695 |
| HphI | GGTGA | 1 cut(s) | 198 |
| Hpy166II | GTNNAC | 3 cut(s) | 318, 566, 669 |
| Hpy188I | TCNGA | 4 cut(s) | 336, 425, 504, 525 |
| Hpy188III | TCNNGA | 6 cut(s) | 154, 327, 446, 473, 487, 620 |
| Hpy8I | GTNNAC | 3 cut(s) | 318, 566, 669 |
| Hpy99I | CGWCG | 1 cut(s) | 188 |
| HpyAV | CCTTC | 2 cut(s) | 427, 617 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 188, 572 |
| HpyCH4IV | ACGT | 3 cut(s) | 383, 499, 598 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 403 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 239, 554 |
| HpyF3I | CTNAG | 4 cut(s) | 155, 278, 361, 672 |
| HpySE526I | ACGT | 3 cut(s) | 383, 499, 598 |
| Hsp92II | CATG | 4 cut(s) | 85, 175, 433, 449 |
| KpnI | GGTACC | 1 cut(s) | 192 |
| Kzo9I | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| LguI | GCTCTTC | 1 cut(s) | 486 |
| LmnI | GCTCC | 2 cut(s) | 52, 511 |
| LweI | GCATC | 2 cut(s) | 516, 713 |
| MaeI | CTAG | 2 cut(s) | 327, 730 |
| MaeII | ACGT | 3 cut(s) | 383, 499, 598 |
| MaeIII | GTNAC | 1 cut(s) | 73 |
| MalI | GATC | 6 cut(s) | 111, 115, 143, 267, 275, 287 |
| MboI | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| MboII | GAAGA | 4 cut(s) | 473, 544, 642, 690 |
| MluCI | AATT | 3 cut(s) | 104, 685, 720 |
| MlyI | GAGTC | 1 cut(s) | 704 |
| MmeI | TCCRAC | 2 cut(s) | 42, 263 |
| MnlI | CCTC | 8 cut(s) | 49, 88, 179, 215, 388, 594, 635, 638 |
| MroXI | GAANNNNTTC | 2 cut(s) | 480, 627 |
| MspR9I | CCNGG | 2 cut(s) | 253, 352 |
| Mva1269I | GAATGC | 1 cut(s) | 343 |
| MvaI | CCWGG | 2 cut(s) | 253, 352 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 239, 554 |
| NdeII | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| NlaIII | CATG | 4 cut(s) | 85, 175, 433, 449 |
| NlaIV | GGNNCC | 1 cut(s) | 190 |
| NmuCI | GTSAC | 1 cut(s) | 73 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PciSI | GCTCTTC | 1 cut(s) | 486 |
| PctI | GAATGC | 1 cut(s) | 343 |
| PdmI | GAANNNNTTC | 2 cut(s) | 480, 627 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PkrI | GCNGC | 1 cut(s) | 232 |
| PleI | GAGTC | 1 cut(s) | 703 |
| PpsI | GAGTC | 1 cut(s) | 703 |
| Psp6I | CCWGG | 2 cut(s) | 251, 350 |
| PspGI | CCWGG | 2 cut(s) | 251, 350 |
| PspN4I | GGNNCC | 1 cut(s) | 190 |
| PspPI | GGNCC | 1 cut(s) | 539 |
| RsaI | GTAC | 3 cut(s) | 57, 190, 661 |
| RsaNI | GTAC | 3 cut(s) | 56, 189, 660 |
| SapI | GCTCTTC | 1 cut(s) | 486 |
| SatI | GCNGC | 1 cut(s) | 231 |
| Sau3AI | GATC | 6 cut(s) | 109, 113, 141, 265, 273, 285 |
| Sau96I | GGNCC | 1 cut(s) | 539 |
| SchI | GAGTC | 1 cut(s) | 704 |
| ScrFI | CCNGG | 2 cut(s) | 253, 352 |
| SfaNI | GCATC | 2 cut(s) | 516, 713 |
| SinI | GGWCC | 1 cut(s) | 539 |
| Sse9I | AATT | 3 cut(s) | 104, 685, 720 |
| SsiI | CCGC | 1 cut(s) | 230 |
| SspI | AATATT | 1 cut(s) | 420 |
| SspMI | CTAG | 2 cut(s) | 327, 730 |
| StyD4I | CCNGG | 2 cut(s) | 251, 350 |
| TaaI | ACNGT | 3 cut(s) | 55, 188, 572 |
| TaiI | ACGT | 3 cut(s) | 386, 502, 601 |
| TaqI | TCGA | 2 cut(s) | 112, 586 |
| TasI | AATT | 3 cut(s) | 104, 685, 720 |
| TauI | GCSGC | 1 cut(s) | 233 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| TscAI | CASTG | 2 cut(s) | 28, 232 |
| TseFI | GTSAC | 1 cut(s) | 73 |
| Tsp45I | GTSAC | 1 cut(s) | 73 |
| TspDTI | ATGAA | 2 cut(s) | 429, 446 |
| TspGWI | ACGGA | 1 cut(s) | 298 |
| TspRI | CASTG | 2 cut(s) | 28, 232 |
| VpaK11BI | GGWCC | 1 cut(s) | 539 |
| XbaI | TCTAGA | 1 cut(s) | 326 |
| XmiI | GTMKAC | 1 cut(s) | 317 |
| XmnI | GAANNNNTTC | 2 cut(s) | 480, 627 |
| XspI | CTAG | 2 cut(s) | 327, 730 |