gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 318 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 674 |
| AccII | CGCG | 1 cut(s) | 567 |
| AccIII | TCCGGA | 1 cut(s) | 91 |
| AciI | CCGC | 5 cut(s) | 116, 208, 526, 567, 661 |
| AclWI | GGATC | 1 cut(s) | 612 |
| AcoI | YGGCCR | 1 cut(s) | 610 |
| AcuI | CTGAAG | 2 cut(s) | 134, 142 |
| AfaI | GTAC | 1 cut(s) | 241 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 674 |
| AgsI | TTSAA | 3 cut(s) | 125, 348, 437 |
| AluBI | AGCT | 7 cut(s) | 128, 148, 393, 455, 479, 657, 698 |
| AluI | AGCT | 7 cut(s) | 128, 148, 393, 455, 479, 657, 698 |
| Alw26I | GTCTC | 1 cut(s) | 92 |
| AlwI | GGATC | 1 cut(s) | 612 |
| Aor13HI | TCCGGA | 1 cut(s) | 91 |
| AoxI | GGCC | 2 cut(s) | 367, 610 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 580, 612 |
| AseI | ATTAAT | 1 cut(s) | 285 |
| AspS9I | GGNCC | 2 cut(s) | 368, 629 |
| AsuC2I | CCSGG | 1 cut(s) | 323 |
| AsuHPI | GGTGA | 2 cut(s) | 208, 508 |
| AvaII | GGWCC | 1 cut(s) | 629 |
| BaeGI | GKGCMC | 1 cut(s) | 321 |
| BalI | TGGCCA | 1 cut(s) | 612 |
| BanI | GGYRCC | 1 cut(s) | 318 |
| BauI | CACGAG | 1 cut(s) | 558 |
| BccI | CCATC | 4 cut(s) | 25, 425, 676, 709 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BcnI | CCSGG | 1 cut(s) | 323 |
| BcoDI | GTCTC | 1 cut(s) | 92 |
| BfaI | CTAG | 1 cut(s) | 246 |
| BisI | GCNGC | 2 cut(s) | 117, 568 |
| BlsI | GCNGC | 2 cut(s) | 118, 569 |
| Bme1390I | CCNGG | 1 cut(s) | 323 |
| Bme18I | GGWCC | 1 cut(s) | 629 |
| BmgT120I | GGNCC | 2 cut(s) | 368, 629 |
| BmiI | GGNNCC | 3 cut(s) | 27, 320, 652 |
| BmrFI | CCNGG | 1 cut(s) | 323 |
| BmsI | GCATC | 2 cut(s) | 40, 418 |
| BpuEI | CTTGAG | 2 cut(s) | 157, 384 |
| BpuMI | CCSGG | 1 cut(s) | 323 |
| BsaBI | GATNNNNATC | 1 cut(s) | 347 |
| BsaJI | CCNNGG | 1 cut(s) | 673 |
| BsaWI | WCCGGW | 1 cut(s) | 91 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 674 |
| Bse1I | ACTGG | 2 cut(s) | 495, 553 |
| Bse3DI | GCAATG | 1 cut(s) | 440 |
| Bse8I | GATNNNNATC | 1 cut(s) | 347 |
| BseAI | TCCGGA | 1 cut(s) | 91 |
| BseDI | CCNNGG | 1 cut(s) | 673 |
| BseGI | GGATG | 5 cut(s) | 55, 100, 178, 650, 668 |
| BseJI | GATNNNNATC | 1 cut(s) | 347 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 674 |
| BseMI | GCAATG | 1 cut(s) | 440 |
| BseNI | ACTGG | 2 cut(s) | 495, 553 |
| BseSI | GKGCMC | 1 cut(s) | 321 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| Bsh1236I | CGCG | 1 cut(s) | 567 |
| BshFI | GGCC | 2 cut(s) | 369, 612 |
| BshNI | GGYRCC | 1 cut(s) | 318 |
| BsiSI | CCGG | 2 cut(s) | 92, 323 |
| BslFI | GGGAC | 1 cut(s) | 582 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 674 |
| BsmAI | GTCTC | 1 cut(s) | 92 |
| BsmFI | GGGAC | 1 cut(s) | 582 |
| BsmI | GAATGC | 1 cut(s) | 210 |
| BsnI | GGCC | 2 cut(s) | 369, 612 |
| Bsp1286I | GDGCHC | 1 cut(s) | 321 |
| Bsp13I | TCCGGA | 1 cut(s) | 91 |
| Bsp143I | GATC | 1 cut(s) | 617 |
| BspACI | CCGC | 5 cut(s) | 116, 208, 526, 567, 661 |
| BspANI | GGCC | 2 cut(s) | 369, 612 |
| BspEI | TCCGGA | 1 cut(s) | 91 |
| BspFNI | CGCG | 1 cut(s) | 567 |
| BspHI | TCATGA | 1 cut(s) | 354 |
| BspLI | GGNNCC | 3 cut(s) | 27, 320, 652 |
| BspPI | GGATC | 1 cut(s) | 612 |
| BspT107I | GGYRCC | 1 cut(s) | 318 |
| BsrDI | GCAATG | 1 cut(s) | 440 |
| BsrI | ACTGG | 2 cut(s) | 495, 553 |
| BssECI | CCNNGG | 1 cut(s) | 673 |
| BssMI | GATC | 1 cut(s) | 617 |
| BssSI | CACGAG | 1 cut(s) | 558 |
| Bst2BI | CACGAG | 1 cut(s) | 558 |
| Bst4CI | ACNGT | 1 cut(s) | 103 |
| Bst6I | CTCTTC | 1 cut(s) | 518 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 113 |
| BstDSI | CCRYGG | 1 cut(s) | 673 |
| BstF5I | GGATG | 5 cut(s) | 55, 100, 178, 650, 668 |
| BstFNI | CGCG | 1 cut(s) | 567 |
| BstKTI | GATC | 1 cut(s) | 620 |
| BstMAI | GTCTC | 1 cut(s) | 92 |
| BstMBI | GATC | 1 cut(s) | 617 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 125 |
| BstSCI | CCNGG | 1 cut(s) | 321 |
| BstSLI | GKGCMC | 1 cut(s) | 321 |
| BstUI | CGCG | 1 cut(s) | 567 |
| BstX2I | RGATCY | 1 cut(s) | 617 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 551 |
| BstYI | RGATCY | 1 cut(s) | 617 |
| BsuRI | GGCC | 2 cut(s) | 369, 612 |
| BtgI | CCRYGG | 1 cut(s) | 673 |
| BtsCI | GGATG | 5 cut(s) | 55, 100, 178, 650, 668 |
| BtsIMutI | CAGTG | 1 cut(s) | 108 |
| CciI | TCATGA | 1 cut(s) | 354 |
| Cfr13I | GGNCC | 2 cut(s) | 368, 629 |
| CseI | GACGC | 1 cut(s) | 573 |
| Csp6I | GTAC | 1 cut(s) | 240 |
| CviAII | CATG | 3 cut(s) | 58, 355, 608 |
| CviQI | GTAC | 1 cut(s) | 240 |
| DpnI | GATC | 1 cut(s) | 619 |
| DpnII | GATC | 1 cut(s) | 617 |
| EaeI | YGGCCR | 1 cut(s) | 610 |
| Eam1104I | CTCTTC | 1 cut(s) | 518 |
| EarI | CTCTTC | 1 cut(s) | 518 |
| Eco47I | GGWCC | 1 cut(s) | 629 |
| Eco57I | CTGAAG | 2 cut(s) | 134, 142 |
| FaeI | CATG | 3 cut(s) | 61, 358, 611 |
| FaqI | GGGAC | 1 cut(s) | 582 |
| FatI | CATG | 3 cut(s) | 57, 354, 607 |
| FauI | CCCGC | 1 cut(s) | 668 |
| FauNDI | CATATG | 2 cut(s) | 109, 640 |
| Fnu4HI | GCNGC | 2 cut(s) | 117, 568 |
| FokI | GGATG | 5 cut(s) | 62, 107, 185, 655, 657 |
| Fsp4HI | GCNGC | 2 cut(s) | 117, 568 |
| FspBI | CTAG | 1 cut(s) | 246 |
| GluI | GCNGC | 2 cut(s) | 117, 568 |
| HaeIII | GGCC | 2 cut(s) | 369, 612 |
| HapII | CCGG | 2 cut(s) | 92, 323 |
| HgaI | GACGC | 1 cut(s) | 573 |
| Hin1II | CATG | 3 cut(s) | 61, 358, 611 |
| HindIII | AAGCTT | 2 cut(s) | 126, 146 |
| HinfI | GANTC | 5 cut(s) | 199, 299, 332, 494, 499 |
| HpaII | CCGG | 2 cut(s) | 92, 323 |
| HphI | GGTGA | 2 cut(s) | 208, 508 |
| Hpy166II | GTNNAC | 1 cut(s) | 563 |
| Hpy188I | TCNGA | 2 cut(s) | 153, 337 |
| Hpy188III | TCNNGA | 4 cut(s) | 92, 136, 355, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 563 |
| HpyAV | CCTTC | 3 cut(s) | 61, 242, 631 |
| HpyCH4III | ACNGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 3 cut(s) | 78, 469, 536 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 125 |
| Hsp92II | CATG | 3 cut(s) | 61, 358, 611 |
| Kpn2I | TCCGGA | 1 cut(s) | 91 |
| Kzo9I | GATC | 1 cut(s) | 617 |
| LmnI | GCTCC | 4 cut(s) | 25, 452, 662, 703 |
| LpnPI | CCDG | 9 cut(s) | 105, 279, 300, 336, 476, 534, 564, 612, 667 |
| LweI | GCATC | 2 cut(s) | 40, 418 |
| MaeI | CTAG | 1 cut(s) | 246 |
| MaeIII | GTNAC | 3 cut(s) | 175, 186, 407 |
| MalI | GATC | 1 cut(s) | 619 |
| MboI | GATC | 1 cut(s) | 617 |
| MboII | GAAGA | 1 cut(s) | 505 |
| MflI | RGATCY | 1 cut(s) | 617 |
| MhlI | GDGCHC | 1 cut(s) | 321 |
| MlsI | TGGCCA | 1 cut(s) | 612 |
| MluCI | AATT | 1 cut(s) | 71 |
| MluNI | TGGCCA | 1 cut(s) | 612 |
| MlyI | GAGTC | 2 cut(s) | 293, 326 |
| MmeI | TCCRAC | 2 cut(s) | 241, 360 |
| MnlI | CCTC | 4 cut(s) | 381, 514, 521, 584 |
| Mox20I | TGGCCA | 1 cut(s) | 612 |
| MroI | TCCGGA | 1 cut(s) | 91 |
| MscI | TGGCCA | 1 cut(s) | 612 |
| MseI | TTAA | 3 cut(s) | 44, 252, 285 |
| MslI | CAYNNNNRTG | 1 cut(s) | 643 |
| Msp20I | TGGCCA | 1 cut(s) | 612 |
| MspI | CCGG | 2 cut(s) | 92, 323 |
| MspR9I | CCNGG | 1 cut(s) | 323 |
| Mva1269I | GAATGC | 1 cut(s) | 210 |
| MvnI | CGCG | 1 cut(s) | 567 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 125 |
| NciI | CCSGG | 1 cut(s) | 323 |
| NdeI | CATATG | 2 cut(s) | 109, 640 |
| NdeII | GATC | 1 cut(s) | 617 |
| NlaIII | CATG | 3 cut(s) | 61, 358, 611 |
| NlaIV | GGNNCC | 3 cut(s) | 27, 320, 652 |
| NmuCI | GTSAC | 3 cut(s) | 175, 186, 407 |
| PagI | TCATGA | 1 cut(s) | 354 |
| PctI | GAATGC | 1 cut(s) | 210 |
| PfeI | GAWTC | 3 cut(s) | 199, 494, 499 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 674 |
| PkrI | GCNGC | 2 cut(s) | 118, 569 |
| PleI | GAGTC | 2 cut(s) | 293, 326 |
| PpsI | GAGTC | 2 cut(s) | 293, 326 |
| PshBI | ATTAAT | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 3 cut(s) | 27, 320, 652 |
| PspPI | GGNCC | 2 cut(s) | 368, 629 |
| PsuI | RGATCY | 1 cut(s) | 617 |
| RsaI | GTAC | 1 cut(s) | 241 |
| RsaNI | GTAC | 1 cut(s) | 240 |
| RseI | CAYNNNNRTG | 1 cut(s) | 643 |
| SaqAI | TTAA | 3 cut(s) | 44, 252, 285 |
| SatI | GCNGC | 2 cut(s) | 117, 568 |
| Sau3AI | GATC | 1 cut(s) | 617 |
| Sau96I | GGNCC | 2 cut(s) | 368, 629 |
| SchI | GAGTC | 2 cut(s) | 293, 326 |
| ScrFI | CCNGG | 1 cut(s) | 323 |
| SduI | GDGCHC | 1 cut(s) | 321 |
| SfaNI | GCATC | 2 cut(s) | 40, 418 |
| SinI | GGWCC | 1 cut(s) | 629 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 643 |
| SmlI | CTYRAG | 2 cut(s) | 136, 399 |
| SmoI | CTYRAG | 2 cut(s) | 136, 399 |
| Sse9I | AATT | 1 cut(s) | 71 |
| SsiI | CCGC | 5 cut(s) | 116, 208, 526, 567, 661 |
| SspI | AATATT | 1 cut(s) | 388 |
| SspMI | CTAG | 1 cut(s) | 246 |
| StyD4I | CCNGG | 1 cut(s) | 321 |
| TaaI | ACNGT | 1 cut(s) | 103 |
| TaqI | TCGA | 1 cut(s) | 497 |
| TasI | AATT | 1 cut(s) | 71 |
| TauI | GCSGC | 2 cut(s) | 119, 570 |
| TfiI | GAWTC | 3 cut(s) | 199, 494, 499 |
| Tru1I | TTAA | 3 cut(s) | 44, 252, 285 |
| Tru9I | TTAA | 3 cut(s) | 44, 252, 285 |
| TscAI | CASTG | 1 cut(s) | 108 |
| TseFI | GTSAC | 3 cut(s) | 175, 186, 407 |
| Tsp45I | GTSAC | 3 cut(s) | 175, 186, 407 |
| TspDTI | ATGAA | 2 cut(s) | 371, 596 |
| TspGWI | ACGGA | 1 cut(s) | 227 |
| TspRI | CASTG | 1 cut(s) | 108 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 1 cut(s) | 629 |
| VspI | ATTAAT | 1 cut(s) | 285 |
| XspI | CTAG | 1 cut(s) | 246 |