Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 44 - 217 | 1e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 275 |
| AatII | GACGTC | 1 cut(s) | 57 |
| AccB1I | GGYRCC | 2 cut(s) | 176, 258 |
| AccBSI | CCGCTC | 1 cut(s) | 370 |
| AccI | GTMKAC | 1 cut(s) | 171 |
| AccII | CGCG | 3 cut(s) | 162, 230, 524 |
| AcoI | YGGCCR | 3 cut(s) | 3, 342, 495 |
| AcsI | RAATTY | 2 cut(s) | 197, 391 |
| AcuI | CTGAAG | 1 cut(s) | 232 |
| AcyI | GRCGYC | 4 cut(s) | 54, 259, 270, 276 |
| AfaI | GTAC | 1 cut(s) | 410 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 249, 549 |
| AgsI | TTSAA | 2 cut(s) | 397, 616 |
| AjiI | CACGTC | 1 cut(s) | 381 |
| AjnI | CCWGG | 1 cut(s) | 344 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 359, 391 |
| AluBI | AGCT | 2 cut(s) | 235, 493 |
| AluI | AGCT | 2 cut(s) | 235, 493 |
| Alw26I | GTCTC | 1 cut(s) | 126 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 255 |
| AoxI | GGCC | 6 cut(s) | 3, 154, 333, 342, 495, 648 |
| ApeKI | GCWGC | 2 cut(s) | 232, 316 |
| ApoI | RAATTY | 2 cut(s) | 197, 391 |
| AspLEI | GCGC | 3 cut(s) | 232, 261, 316 |
| AspS9I | GGNCC | 2 cut(s) | 333, 349 |
| AsuC2I | CCSGG | 1 cut(s) | 499 |
| AsuHPI | GGTGA | 4 cut(s) | 136, 229, 463, 520 |
| AvaII | GGWCC | 1 cut(s) | 349 |
| AxyI | CCTNAGG | 1 cut(s) | 545 |
| BanI | GGYRCC | 2 cut(s) | 176, 258 |
| BanII | GRGCYC | 1 cut(s) | 225 |
| BbvI | GCAGC | 2 cut(s) | 244, 303 |
| BccI | CCATC | 3 cut(s) | 146, 188, 508 |
| BceAI | ACGGC | 4 cut(s) | 169, 190, 357, 606 |
| BciT130I | CCWGG | 1 cut(s) | 346 |
| BcnI | CCSGG | 1 cut(s) | 499 |
| BcoDI | GTCTC | 1 cut(s) | 126 |
| BfmI | CTRYAG | 1 cut(s) | 422 |
| BfoI | RGCGCY | 2 cut(s) | 262, 317 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 162, 341 |
| BisI | GCNGC | 8 cut(s) | 6, 163, 233, 262, 317, 320, 371, 605 |
| BlsI | GCNGC | 8 cut(s) | 7, 164, 234, 263, 318, 321, 372, 606 |
| Bme1390I | CCNGG | 2 cut(s) | 346, 499 |
| Bme18I | GGWCC | 1 cut(s) | 349 |
| BmgBI | CACGTC | 1 cut(s) | 381 |
| BmgT120I | GGNCC | 2 cut(s) | 333, 349 |
| BmiI | GGNNCC | 4 cut(s) | 178, 260, 334, 350 |
| BmrFI | CCNGG | 2 cut(s) | 346, 499 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 635, 667 |
| BpmI | CTGGAG | 1 cut(s) | 386 |
| BpuMI | CCSGG | 1 cut(s) | 499 |
| BsaHI | GRCGYC | 4 cut(s) | 54, 259, 270, 276 |
| BsaI | GGTCTC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 4 cut(s) | 151, 160, 214, 345 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 359, 389 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 249, 549 |
| Bse118I | RCCGGY | 1 cut(s) | 272 |
| Bse21I | CCTNAGG | 1 cut(s) | 545 |
| BseBI | CCWGG | 1 cut(s) | 346 |
| BseDI | CCNNGG | 4 cut(s) | 151, 160, 214, 345 |
| BseGI | GGATG | 1 cut(s) | 65 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 249, 549 |
| BseMII | CTCAG | 1 cut(s) | 536 |
| BseRI | GAGGAG | 7 cut(s) | 13, 16, 19, 22, 50, 575, 659 |
| BseXI | GCAGC | 2 cut(s) | 244, 303 |
| BseYI | CCCAGC | 1 cut(s) | 662 |
| Bsh1236I | CGCG | 3 cut(s) | 162, 230, 524 |
| BshFI | GGCC | 6 cut(s) | 5, 156, 335, 344, 497, 650 |
| BshNI | GGYRCC | 2 cut(s) | 176, 258 |
| BsiSI | CCGG | 3 cut(s) | 273, 498, 557 |
| BslFI | GGGAC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 249, 549 |
| BsmAI | GTCTC | 1 cut(s) | 126 |
| BsmFI | GGGAC | 1 cut(s) | 362 |
| BsnI | GGCC | 6 cut(s) | 5, 156, 335, 344, 497, 650 |
| Bso31I | GGTCTC | 1 cut(s) | 126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 225 |
| Bsp143I | GATC | 1 cut(s) | 418 |
| BspANI | GGCC | 6 cut(s) | 5, 156, 335, 344, 497, 650 |
| BspCNI | CTCAG | 1 cut(s) | 537 |
| BspFNI | CGCG | 3 cut(s) | 162, 230, 524 |
| BspHI | TCATGA | 2 cut(s) | 129, 402 |
| BspLI | GGNNCC | 4 cut(s) | 178, 260, 334, 350 |
| BspMAI | CTGCAG | 1 cut(s) | 426 |
| BspT107I | GGYRCC | 2 cut(s) | 176, 258 |
| BspTNI | GGTCTC | 1 cut(s) | 126 |
| BsrBI | CCGCTC | 1 cut(s) | 370 |
| BsrFI | RCCGGY | 1 cut(s) | 272 |
| BssAI | RCCGGY | 1 cut(s) | 272 |
| BssECI | CCNNGG | 4 cut(s) | 151, 160, 214, 345 |
| BssMI | GATC | 1 cut(s) | 418 |
| BssNI | GRCGYC | 4 cut(s) | 54, 259, 270, 276 |
| BssT1I | CCWWGG | 1 cut(s) | 214 |
| Bst2UI | CCWGG | 1 cut(s) | 346 |
| BstACI | GRCGYC | 4 cut(s) | 54, 259, 270, 276 |
| BstC8I | GCNNGC | 4 cut(s) | 221, 274, 495, 639 |
| BstDEI | CTNAG | 1 cut(s) | 545 |
| BstDSI | CCRYGG | 2 cut(s) | 151, 160 |
| BstF5I | GGATG | 1 cut(s) | 65 |
| BstFNI | CGCG | 3 cut(s) | 162, 230, 524 |
| BstH2I | RGCGCY | 2 cut(s) | 262, 317 |
| BstHHI | GCGC | 3 cut(s) | 232, 261, 316 |
| BstKTI | GATC | 1 cut(s) | 421 |
| BstMAI | GTCTC | 1 cut(s) | 126 |
| BstMBI | GATC | 1 cut(s) | 418 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 162, 209, 229, 341, 370, 647 |
| BstNI | CCWGG | 1 cut(s) | 346 |
| BstSCI | CCNGG | 2 cut(s) | 344, 497 |
| BstSFI | CTRYAG | 1 cut(s) | 422 |
| BstUI | CGCG | 3 cut(s) | 162, 230, 524 |
| BstV1I | GCAGC | 2 cut(s) | 244, 303 |
| Bsu36I | CCTNAGG | 1 cut(s) | 545 |
| BsuRI | GGCC | 6 cut(s) | 5, 156, 335, 344, 497, 650 |
| BtgI | CCRYGG | 2 cut(s) | 151, 160 |
| BtrI | CACGTC | 1 cut(s) | 381 |
| BtsCI | GGATG | 1 cut(s) | 65 |
| Cac8I | GCNNGC | 4 cut(s) | 221, 274, 495, 639 |
| CaiI | CAGNNNCTG | 1 cut(s) | 255 |
| CciI | TCATGA | 2 cut(s) | 129, 402 |
| CfoI | GCGC | 3 cut(s) | 232, 261, 316 |
| Cfr10I | RCCGGY | 1 cut(s) | 272 |
| Cfr13I | GGNCC | 2 cut(s) | 333, 349 |
| Cfr42I | CCGCGG | 1 cut(s) | 163 |
| CseI | GACGC | 4 cut(s) | 265, 278, 370, 530 |
| Csp6I | GTAC | 1 cut(s) | 409 |
| CviAII | CATG | 3 cut(s) | 82, 130, 403 |
| CviQI | GTAC | 1 cut(s) | 409 |
| DdeI | CTNAG | 1 cut(s) | 545 |
| DinI | GGCGCC | 1 cut(s) | 260 |
| DpnI | GATC | 1 cut(s) | 420 |
| DpnII | GATC | 1 cut(s) | 418 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 275 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 275 |
| EaeI | YGGCCR | 3 cut(s) | 3, 342, 495 |
| EciI | GGCGGA | 1 cut(s) | 656 |
| Eco130I | CCWWGG | 1 cut(s) | 214 |
| Eco147I | AGGCCT | 1 cut(s) | 650 |
| Eco24I | GRGCYC | 1 cut(s) | 225 |
| Eco31I | GGTCTC | 1 cut(s) | 126 |
| Eco47I | GGWCC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 1 cut(s) | 232 |
| Eco81I | CCTNAGG | 1 cut(s) | 545 |
| EcoO109I | RGGNCCY | 1 cut(s) | 349 |
| EcoRII | CCWGG | 1 cut(s) | 344 |
| EcoT14I | CCWWGG | 1 cut(s) | 214 |
| EcoT38I | GRGCYC | 1 cut(s) | 225 |
| EgeI | GGCGCC | 1 cut(s) | 260 |
| EheI | GGCGCC | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 214 |
| FaeI | CATG | 3 cut(s) | 85, 133, 406 |
| FaiI | YATR | 9 cut(s) | 71, 73, 83, 89, 131, 404, 462, 567, 627 |
| FaqI | GGGAC | 1 cut(s) | 362 |
| FatI | CATG | 3 cut(s) | 81, 129, 402 |
| FauNDI | CATATG | 1 cut(s) | 71 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 163, 233, 262, 317, 320, 371, 605 |
| FokI | GGATG | 1 cut(s) | 52 |
| FriOI | GRGCYC | 1 cut(s) | 225 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 163, 233, 262, 317, 320, 371, 605 |
| GlaI | GCGC | 3 cut(s) | 231, 260, 315 |
| GluI | GCNGC | 8 cut(s) | 6, 163, 233, 262, 317, 320, 371, 605 |
| GsaI | CCCAGC | 1 cut(s) | 666 |
| GsuI | CTGGAG | 1 cut(s) | 386 |
| HaeII | RGCGCY | 2 cut(s) | 262, 317 |
| HaeIII | GGCC | 6 cut(s) | 5, 156, 335, 344, 497, 650 |
| HapII | CCGG | 3 cut(s) | 273, 498, 557 |
| HgaI | GACGC | 4 cut(s) | 265, 278, 370, 530 |
| HhaI | GCGC | 3 cut(s) | 232, 261, 316 |
| Hin1I | GRCGYC | 4 cut(s) | 54, 259, 270, 276 |
| Hin1II | CATG | 3 cut(s) | 85, 133, 406 |
| Hin6I | GCGC | 3 cut(s) | 230, 259, 314 |
| HinP1I | GCGC | 3 cut(s) | 230, 259, 314 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| HinfI | GANTC | 3 cut(s) | 98, 446, 667 |
| HpaII | CCGG | 3 cut(s) | 273, 498, 557 |
| HphI | GGTGA | 4 cut(s) | 136, 229, 463, 520 |
| Hpy166II | GTNNAC | 2 cut(s) | 172, 378 |
| Hpy188I | TCNGA | 3 cut(s) | 244, 418, 579 |
| Hpy188III | TCNNGA | 2 cut(s) | 130, 403 |
| Hpy8I | GTNNAC | 2 cut(s) | 172, 378 |
| Hpy99I | CGWCG | 6 cut(s) | 173, 176, 272, 313, 385, 524 |
| HpyAV | CCTTC | 1 cut(s) | 430 |
| HpyCH4IV | ACGT | 3 cut(s) | 54, 168, 380 |
| HpyCH4V | TGCA | 2 cut(s) | 75, 424 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 162, 209, 229, 341, 370, 647 |
| HpyF3I | CTNAG | 1 cut(s) | 545 |
| HpySE526I | ACGT | 3 cut(s) | 54, 168, 380 |
| Hsp92I | GRCGYC | 4 cut(s) | 54, 259, 270, 276 |
| Hsp92II | CATG | 3 cut(s) | 85, 133, 406 |
| HspAI | GCGC | 3 cut(s) | 230, 259, 314 |
| KasI | GGCGCC | 1 cut(s) | 258 |
| KroI | GCCGGC | 1 cut(s) | 272 |
| KroNI | GCCGGC | 1 cut(s) | 274 |
| KspI | CCGCGG | 1 cut(s) | 163 |
| Kzo9I | GATC | 1 cut(s) | 418 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| Lsp1109I | GCAGC | 2 cut(s) | 244, 303 |
| MaeII | ACGT | 3 cut(s) | 54, 168, 380 |
| MaeIII | GTNAC | 1 cut(s) | 536 |
| MalI | GATC | 1 cut(s) | 420 |
| MbiI | CCGCTC | 1 cut(s) | 370 |
| MboI | GATC | 1 cut(s) | 418 |
| MboII | GAAGA | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 225 |
| MluCI | AATT | 2 cut(s) | 197, 391 |
| Mly113I | GGCGCC | 1 cut(s) | 259 |
| MlyI | GAGTC | 1 cut(s) | 440 |
| MmeI | TCCRAC | 1 cut(s) | 267 |
| MreI | CGCCGGCG | 1 cut(s) | 272 |
| MroNI | GCCGGC | 1 cut(s) | 272 |
| MslI | CAYNNNNRTG | 2 cut(s) | 70, 383 |
| MspA1I | CMGCKG | 1 cut(s) | 162 |
| MspI | CCGG | 3 cut(s) | 273, 498, 557 |
| MspR9I | CCNGG | 2 cut(s) | 346, 499 |
| MvaI | CCWGG | 1 cut(s) | 346 |
| MvnI | CGCG | 3 cut(s) | 162, 230, 524 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 162, 209, 229, 341, 370, 647 |
| NaeI | GCCGGC | 1 cut(s) | 274 |
| NarI | GGCGCC | 1 cut(s) | 259 |
| NciI | CCSGG | 1 cut(s) | 499 |
| NdeI | CATATG | 1 cut(s) | 71 |
| NdeII | GATC | 1 cut(s) | 418 |
| NgoMIV | GCCGGC | 1 cut(s) | 272 |
| NlaIII | CATG | 3 cut(s) | 85, 133, 406 |
| NlaIV | GGNNCC | 4 cut(s) | 178, 260, 334, 350 |
| NmuCI | GTSAC | 1 cut(s) | 536 |
| PagI | TCATGA | 2 cut(s) | 129, 402 |
| PceI | AGGCCT | 1 cut(s) | 650 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 216, 273, 305, 386, 590 |
| PdiI | GCCGGC | 1 cut(s) | 274 |
| PfeI | GAWTC | 2 cut(s) | 98, 667 |
| PkrI | GCNGC | 8 cut(s) | 7, 164, 234, 263, 318, 321, 372, 606 |
| PleI | GAGTC | 1 cut(s) | 440 |
| PluTI | GGCGCC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 440 |
| PpuMI | RGGWCCY | 1 cut(s) | 349 |
| Psp5II | RGGWCCY | 1 cut(s) | 349 |
| Psp6I | CCWGG | 1 cut(s) | 344 |
| PspFI | CCCAGC | 1 cut(s) | 662 |
| PspGI | CCWGG | 1 cut(s) | 344 |
| PspN4I | GGNNCC | 4 cut(s) | 178, 260, 334, 350 |
| PspPI | GGNCC | 2 cut(s) | 333, 349 |
| PspPPI | RGGWCCY | 1 cut(s) | 349 |
| PstI | CTGCAG | 1 cut(s) | 426 |
| PstNI | CAGNNNCTG | 1 cut(s) | 255 |
| RsaI | GTAC | 1 cut(s) | 410 |
| RsaNI | GTAC | 1 cut(s) | 409 |
| RseI | CAYNNNNRTG | 2 cut(s) | 70, 383 |
| SacII | CCGCGG | 1 cut(s) | 163 |
| SalI | GTCGAC | 1 cut(s) | 170 |
| SatI | GCNGC | 8 cut(s) | 6, 163, 233, 262, 317, 320, 371, 605 |
| Sau3AI | GATC | 1 cut(s) | 418 |
| Sau96I | GGNCC | 2 cut(s) | 333, 349 |
| SchI | GAGTC | 1 cut(s) | 440 |
| ScrFI | CCNGG | 2 cut(s) | 346, 499 |
| SduI | GDGCHC | 1 cut(s) | 225 |
| SfcI | CTRYAG | 1 cut(s) | 422 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 341 |
| SfoI | GGCGCC | 1 cut(s) | 260 |
| Sfr303I | CCGCGG | 1 cut(s) | 163 |
| SgrAI | CRCCGGYG | 1 cut(s) | 272 |
| SgrBI | CCGCGG | 1 cut(s) | 163 |
| SgrDI | CGTCGACG | 1 cut(s) | 170 |
| SinI | GGWCC | 1 cut(s) | 349 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 70, 383 |
| Sse9I | AATT | 2 cut(s) | 197, 391 |
| SseBI | AGGCCT | 1 cut(s) | 650 |
| SspDI | GGCGCC | 1 cut(s) | 258 |
| StuI | AGGCCT | 1 cut(s) | 650 |
| StyD4I | CCNGG | 2 cut(s) | 344, 497 |
| StyI | CCWWGG | 1 cut(s) | 214 |
| TaiI | ACGT | 3 cut(s) | 57, 171, 383 |
| TaqI | TCGA | 5 cut(s) | 96, 171, 383, 389, 584 |
| TasI | AATT | 2 cut(s) | 197, 391 |
| TatI | WGTACW | 1 cut(s) | 408 |
| TauI | GCSGC | 6 cut(s) | 8, 165, 264, 322, 373, 607 |
| TfiI | GAWTC | 2 cut(s) | 98, 667 |
| TseFI | GTSAC | 1 cut(s) | 536 |
| TseI | GCWGC | 2 cut(s) | 232, 316 |
| Tsp45I | GTSAC | 1 cut(s) | 536 |
| TspDTI | ATGAA | 2 cut(s) | 103, 419 |
| VpaK11BI | GGWCC | 1 cut(s) | 349 |
| XapI | RAATTY | 2 cut(s) | 197, 391 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| ZraI | GACGTC | 1 cut(s) | 55 |