gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 62 - 209 | 3.9e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 157, 447, 802 |
| AcsI | RAATTY | 2 cut(s) | 95, 880 |
| AcuI | CTGAAG | 1 cut(s) | 639 |
| AfaI | GTAC | 3 cut(s) | 221, 843, 862 |
| AflIII | ACRYGT | 1 cut(s) | 897 |
| AgsI | TTSAA | 2 cut(s) | 585, 632 |
| AluBI | AGCT | 2 cut(s) | 623, 751 |
| AluI | AGCT | 2 cut(s) | 623, 751 |
| Alw26I | GTCTC | 2 cut(s) | 202, 693 |
| AlwI | GGATC | 3 cut(s) | 157, 447, 802 |
| AoxI | GGCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 1 cut(s) | 638 |
| ApoI | RAATTY | 2 cut(s) | 95, 880 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 637, 669 |
| AsuHPI | GGTGA | 2 cut(s) | 457, 688 |
| BauI | CACGAG | 1 cut(s) | 913 |
| BbsI | GAAGAC | 1 cut(s) | 504 |
| BbvI | GCAGC | 1 cut(s) | 625 |
| BccI | CCATC | 2 cut(s) | 140, 538 |
| BciVI | GTATCC | 1 cut(s) | 767 |
| BclI | TGATCA | 2 cut(s) | 177, 460 |
| BcoDI | GTCTC | 2 cut(s) | 202, 693 |
| BfaI | CTAG | 2 cut(s) | 279, 318 |
| BfuI | GTATCC | 1 cut(s) | 767 |
| BglII | AGATCT | 1 cut(s) | 599 |
| BisI | GCNGC | 1 cut(s) | 639 |
| BlpI | GCTNAGC | 1 cut(s) | 567 |
| BlsI | GCNGC | 1 cut(s) | 640 |
| BmcAI | AGTACT | 1 cut(s) | 221 |
| BmiI | GGNNCC | 1 cut(s) | 733 |
| BmsI | GCATC | 1 cut(s) | 858 |
| BpiI | GAAGAC | 1 cut(s) | 504 |
| BpmI | CTGGAG | 1 cut(s) | 846 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 3 cut(s) | 40, 323, 705 |
| BsaWI | WCCGGW | 1 cut(s) | 63 |
| Bse1I | ACTGG | 1 cut(s) | 59 |
| Bse3DI | GCAATG | 1 cut(s) | 612 |
| BseMI | GCAATG | 1 cut(s) | 612 |
| BseNI | ACTGG | 1 cut(s) | 59 |
| BseXI | GCAGC | 1 cut(s) | 625 |
| BshFI | GGCC | 1 cut(s) | 129 |
| BsiSI | CCGG | 1 cut(s) | 64 |
| BsmAI | GTCTC | 2 cut(s) | 202, 693 |
| BsnI | GGCC | 1 cut(s) | 129 |
| Bsp143I | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 567 |
| BspANI | GGCC | 1 cut(s) | 129 |
| BspLI | GGNNCC | 1 cut(s) | 733 |
| BspPI | GGATC | 3 cut(s) | 157, 447, 802 |
| BsrDI | GCAATG | 1 cut(s) | 612 |
| BsrI | ACTGG | 1 cut(s) | 59 |
| BssMI | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| BssSI | CACGAG | 1 cut(s) | 913 |
| Bst2BI | CACGAG | 1 cut(s) | 913 |
| Bst4CI | ACNGT | 2 cut(s) | 783, 860 |
| Bst6I | CTCTTC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 1 cut(s) | 567 |
| BstKTI | GATC | 7 cut(s) | 152, 180, 442, 463, 602, 797, 912 |
| BstMAI | GTCTC | 2 cut(s) | 202, 693 |
| BstMBI | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 757, 830 |
| BstNSI | RCATGY | 2 cut(s) | 686, 901 |
| BstV1I | GCAGC | 1 cut(s) | 625 |
| BstV2I | GAAGAC | 1 cut(s) | 504 |
| BstX2I | RGATCY | 2 cut(s) | 599, 794 |
| BstYI | RGATCY | 2 cut(s) | 599, 794 |
| BsuI | GTATCC | 1 cut(s) | 767 |
| BsuRI | GGCC | 1 cut(s) | 129 |
| Csp6I | GTAC | 3 cut(s) | 220, 842, 861 |
| CviAII | CATG | 8 cut(s) | 90, 175, 363, 547, 683, 728, 865, 898 |
| CviJI | RGCY | 6 cut(s) | 129, 470, 566, 623, 638, 751 |
| CviKI_1 | RGCY | 6 cut(s) | 129, 470, 566, 623, 638, 751 |
| CviQI | GTAC | 3 cut(s) | 220, 842, 861 |
| DdeI | CTNAG | 1 cut(s) | 567 |
| DpnI | GATC | 7 cut(s) | 151, 179, 441, 462, 601, 796, 911 |
| DpnII | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| Eam1104I | CTCTTC | 1 cut(s) | 627 |
| EarI | CTCTTC | 1 cut(s) | 627 |
| Eco57I | CTGAAG | 1 cut(s) | 639 |
| FaeI | CATG | 8 cut(s) | 93, 178, 366, 550, 686, 731, 868, 901 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 298, 330, 377, 409, 612, 644 |
| FatI | CATG | 8 cut(s) | 89, 174, 362, 546, 682, 727, 864, 897 |
| FauNDI | CATATG | 1 cut(s) | 486 |
| FbaI | TGATCA | 2 cut(s) | 177, 460 |
| Fnu4HI | GCNGC | 1 cut(s) | 639 |
| Fsp4HI | GCNGC | 1 cut(s) | 639 |
| FspBI | CTAG | 2 cut(s) | 279, 318 |
| GluI | GCNGC | 1 cut(s) | 639 |
| GsuI | CTGGAG | 1 cut(s) | 846 |
| HaeIII | GGCC | 1 cut(s) | 129 |
| HapII | CCGG | 1 cut(s) | 64 |
| Hin1II | CATG | 8 cut(s) | 93, 178, 366, 550, 686, 731, 868, 901 |
| HincII | GTYRAC | 2 cut(s) | 812, 903 |
| HindII | GTYRAC | 2 cut(s) | 812, 903 |
| HinfI | GANTC | 6 cut(s) | 55, 419, 481, 715, 745, 808 |
| HpaII | CCGG | 1 cut(s) | 64 |
| HphI | GGTGA | 2 cut(s) | 457, 688 |
| Hpy166II | GTNNAC | 3 cut(s) | 335, 812, 903 |
| Hpy188I | TCNGA | 6 cut(s) | 54, 205, 418, 535, 698, 807 |
| Hpy188III | TCNNGA | 2 cut(s) | 318, 915 |
| Hpy8I | GTNNAC | 3 cut(s) | 335, 812, 903 |
| HpyAV | CCTTC | 3 cut(s) | 174, 182, 669 |
| HpyCH4III | ACNGT | 2 cut(s) | 783, 860 |
| HpyCH4V | TGCA | 3 cut(s) | 760, 851, 871 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 757, 830 |
| HpyF3I | CTNAG | 1 cut(s) | 567 |
| Hsp92II | CATG | 8 cut(s) | 93, 178, 366, 550, 686, 731, 868, 901 |
| Ksp22I | TGATCA | 2 cut(s) | 177, 460 |
| Kzo9I | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| LpnPI | CCDG | 5 cut(s) | 72, 77, 547, 810, 867 |
| Lsp1109I | GCAGC | 1 cut(s) | 625 |
| LweI | GCATC | 1 cut(s) | 858 |
| MaeI | CTAG | 2 cut(s) | 279, 318 |
| MaeIII | GTNAC | 2 cut(s) | 85, 676 |
| MalI | GATC | 7 cut(s) | 151, 179, 441, 462, 601, 796, 911 |
| MboI | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| MboII | GAAGA | 5 cut(s) | 197, 460, 509, 509, 644 |
| MflI | RGATCY | 2 cut(s) | 599, 794 |
| MluCI | AATT | 6 cut(s) | 10, 40, 95, 504, 593, 880 |
| MlyI | GAGTC | 2 cut(s) | 754, 817 |
| MmeI | TCCRAC | 1 cut(s) | 283 |
| MnlI | CCTC | 3 cut(s) | 339, 628, 729 |
| MseI | TTAA | 3 cut(s) | 15, 369, 596 |
| MspI | CCGG | 1 cut(s) | 64 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 757, 830 |
| NdeI | CATATG | 1 cut(s) | 486 |
| NdeII | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| NlaIII | CATG | 8 cut(s) | 93, 178, 366, 550, 686, 731, 868, 901 |
| NlaIV | GGNNCC | 1 cut(s) | 733 |
| NmuCI | GTSAC | 2 cut(s) | 85, 676 |
| NspI | RCATGY | 2 cut(s) | 686, 901 |
| PciI | ACATGT | 1 cut(s) | 897 |
| PfeI | GAWTC | 4 cut(s) | 55, 419, 481, 715 |
| PkrI | GCNGC | 1 cut(s) | 640 |
| PleI | GAGTC | 2 cut(s) | 753, 816 |
| PpsI | GAGTC | 2 cut(s) | 753, 816 |
| PscI | ACATGT | 1 cut(s) | 897 |
| PspN4I | GGNNCC | 1 cut(s) | 733 |
| PsuI | RGATCY | 2 cut(s) | 599, 794 |
| RsaI | GTAC | 3 cut(s) | 221, 843, 862 |
| RsaNI | GTAC | 3 cut(s) | 220, 842, 861 |
| SaqAI | TTAA | 3 cut(s) | 15, 369, 596 |
| SatI | GCNGC | 1 cut(s) | 639 |
| Sau3AI | GATC | 7 cut(s) | 149, 177, 439, 460, 599, 794, 909 |
| ScaI | AGTACT | 1 cut(s) | 221 |
| SchI | GAGTC | 2 cut(s) | 754, 817 |
| SetI | ASST | 7 cut(s) | 124, 193, 350, 625, 753, 847, 856 |
| SfaNI | GCATC | 1 cut(s) | 858 |
| SmlI | CTYRAG | 3 cut(s) | 19, 338, 720 |
| SmoI | CTYRAG | 3 cut(s) | 19, 338, 720 |
| Sse9I | AATT | 6 cut(s) | 10, 40, 95, 504, 593, 880 |
| SspMI | CTAG | 2 cut(s) | 279, 318 |
| TaaI | ACNGT | 2 cut(s) | 783, 860 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TasI | AATT | 6 cut(s) | 10, 40, 95, 504, 593, 880 |
| TatI | WGTACW | 1 cut(s) | 219 |
| TfiI | GAWTC | 4 cut(s) | 55, 419, 481, 715 |
| Tru1I | TTAA | 3 cut(s) | 15, 369, 596 |
| Tru9I | TTAA | 3 cut(s) | 15, 369, 596 |
| TseFI | GTSAC | 2 cut(s) | 85, 676 |
| TseI | GCWGC | 1 cut(s) | 638 |
| Tsp45I | GTSAC | 2 cut(s) | 85, 676 |
| TspDTI | ATGAA | 6 cut(s) | 17, 149, 351, 473, 510, 563 |
| XapI | RAATTY | 2 cut(s) | 95, 880 |
| XbaI | TCTAGA | 1 cut(s) | 317 |
| XceI | RCATGY | 2 cut(s) | 686, 901 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 670 |
| XspI | CTAG | 2 cut(s) | 279, 318 |
| ZrmI | AGTACT | 1 cut(s) | 221 |