ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 48 - 220 | 2.9e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 663, 686 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 10 |
| AccII | CGCG | 1 cut(s) | 731 |
| AciI | CCGC | 2 cut(s) | 518, 589 |
| AclI | AACGTT | 1 cut(s) | 266 |
| AclWI | GGATC | 3 cut(s) | 257, 287, 414 |
| AcoI | YGGCCR | 1 cut(s) | 614 |
| AcsI | RAATTY | 4 cut(s) | 72, 323, 545, 577 |
| AcuI | CTGAAG | 3 cut(s) | 27, 167, 231 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 517 |
| AflIII | ACRYGT | 1 cut(s) | 159 |
| AgsI | TTSAA | 1 cut(s) | 288 |
| AluBI | AGCT | 4 cut(s) | 236, 341, 400, 491 |
| AluI | AGCT | 4 cut(s) | 236, 341, 400, 491 |
| Alw21I | GWGCWC | 2 cut(s) | 343, 402 |
| Alw26I | GTCTC | 1 cut(s) | 395 |
| AlwI | GGATC | 3 cut(s) | 257, 287, 414 |
| Ama87I | CYCGRG | 2 cut(s) | 57, 630 |
| AoxI | GGCC | 3 cut(s) | 150, 508, 614 |
| ApoI | RAATTY | 4 cut(s) | 72, 323, 545, 577 |
| AvaI | CYCGRG | 2 cut(s) | 57, 630 |
| BanII | GRGCYC | 2 cut(s) | 343, 402 |
| Bbv12I | GWGCWC | 2 cut(s) | 343, 402 |
| BccI | CCATC | 2 cut(s) | 500, 611 |
| BciVI | GTATCC | 1 cut(s) | 305 |
| BcoDI | GTCTC | 1 cut(s) | 395 |
| BfaI | CTAG | 1 cut(s) | 482 |
| BfuI | GTATCC | 1 cut(s) | 305 |
| BglII | AGATCT | 1 cut(s) | 166 |
| BisI | GCNGC | 1 cut(s) | 519 |
| BlsI | GCNGC | 1 cut(s) | 520 |
| BmeT110I | CYCGRG | 2 cut(s) | 57, 630 |
| BmiI | GGNNCC | 1 cut(s) | 468 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 2 cut(s) | 386, 416 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 517 |
| Bse1I | ACTGG | 1 cut(s) | 623 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 517 |
| BseMII | CTCAG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 623 |
| Bsh1236I | CGCG | 1 cut(s) | 731 |
| BshFI | GGCC | 3 cut(s) | 152, 510, 616 |
| BsiHKAI | GWGCWC | 2 cut(s) | 343, 402 |
| BsiHKCI | CYCGRG | 2 cut(s) | 57, 630 |
| BslFI | GGGAC | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 517 |
| BsmAI | GTCTC | 1 cut(s) | 395 |
| BsmBI | CGTCTC | 1 cut(s) | 395 |
| BsmFI | GGGAC | 1 cut(s) | 272 |
| BsnI | GGCC | 3 cut(s) | 152, 510, 616 |
| BsoBI | CYCGRG | 2 cut(s) | 57, 630 |
| Bsp1286I | GDGCHC | 2 cut(s) | 343, 402 |
| Bsp143I | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| BspACI | CCGC | 2 cut(s) | 518, 589 |
| BspANI | GGCC | 3 cut(s) | 152, 510, 616 |
| BspCNI | CTCAG | 1 cut(s) | 152 |
| BspFNI | CGCG | 1 cut(s) | 731 |
| BspLI | GGNNCC | 1 cut(s) | 468 |
| BspPI | GGATC | 3 cut(s) | 257, 287, 414 |
| BsrI | ACTGG | 1 cut(s) | 623 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssMI | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst4CI | ACNGT | 3 cut(s) | 120, 319, 438 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 175, 207 |
| BstDEI | CTNAG | 2 cut(s) | 139, 656 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstFNI | CGCG | 1 cut(s) | 731 |
| BstKTI | GATC | 5 cut(s) | 169, 252, 282, 409, 723 |
| BstMAI | GTCTC | 1 cut(s) | 395 |
| BstMBI | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 377 |
| BstNSI | RCATGY | 1 cut(s) | 163 |
| BstUI | CGCG | 1 cut(s) | 731 |
| BstX2I | RGATCY | 1 cut(s) | 166 |
| BstYI | RGATCY | 1 cut(s) | 166 |
| BsuI | GTATCC | 1 cut(s) | 305 |
| BsuRI | GGCC | 3 cut(s) | 152, 510, 616 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BtsI | GCAGTG | 1 cut(s) | 194 |
| BtsIMutI | CAGTG | 1 cut(s) | 194 |
| CseI | GACGC | 1 cut(s) | 724 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 186, 221 |
| CviAII | CATG | 2 cut(s) | 85, 160 |
| DdeI | CTNAG | 2 cut(s) | 139, 656 |
| DpnI | GATC | 5 cut(s) | 168, 251, 281, 408, 722 |
| DpnII | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10 |
| EaeI | YGGCCR | 1 cut(s) | 614 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 175, 207 |
| EarI | CTCTTC | 3 cut(s) | 3, 175, 207 |
| Ecl136II | GAGCTC | 2 cut(s) | 341, 400 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco147I | AGGCCT | 1 cut(s) | 152 |
| Eco24I | GRGCYC | 2 cut(s) | 343, 402 |
| Eco53kI | GAGCTC | 2 cut(s) | 341, 400 |
| Eco57I | CTGAAG | 3 cut(s) | 27, 167, 231 |
| Eco88I | CYCGRG | 2 cut(s) | 57, 630 |
| EcoICRI | GAGCTC | 2 cut(s) | 341, 400 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| EcoT38I | GRGCYC | 2 cut(s) | 343, 402 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| Esp3I | CGTCTC | 1 cut(s) | 395 |
| FaeI | CATG | 2 cut(s) | 88, 163 |
| FaqI | GGGAC | 1 cut(s) | 272 |
| FatI | CATG | 2 cut(s) | 84, 159 |
| FauNDI | CATATG | 1 cut(s) | 428 |
| Fnu4HI | GCNGC | 1 cut(s) | 519 |
| FokI | GGATG | 1 cut(s) | 9 |
| FriOI | GRGCYC | 2 cut(s) | 343, 402 |
| Fsp4HI | GCNGC | 1 cut(s) | 519 |
| FspBI | CTAG | 1 cut(s) | 482 |
| GluI | GCNGC | 1 cut(s) | 519 |
| HaeIII | GGCC | 3 cut(s) | 152, 510, 616 |
| HgaI | GACGC | 1 cut(s) | 724 |
| Hin1II | CATG | 2 cut(s) | 88, 163 |
| HinfI | GANTC | 4 cut(s) | 11, 32, 539, 691 |
| Hpy166II | GTNNAC | 2 cut(s) | 194, 335 |
| Hpy188I | TCNGA | 5 cut(s) | 147, 157, 442, 544, 608 |
| Hpy188III | TCNNGA | 2 cut(s) | 253, 632 |
| Hpy8I | GTNNAC | 2 cut(s) | 194, 335 |
| Hpy99I | CGWCG | 1 cut(s) | 456 |
| HpyAV | CCTTC | 5 cut(s) | 91, 142, 170, 466, 469 |
| HpyCH4III | ACNGT | 3 cut(s) | 120, 319, 438 |
| HpyCH4IV | ACGT | 3 cut(s) | 266, 454, 558 |
| HpyCH4V | TGCA | 3 cut(s) | 352, 380, 643 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 377 |
| HpyF3I | CTNAG | 2 cut(s) | 139, 656 |
| HpySE526I | ACGT | 3 cut(s) | 266, 454, 558 |
| Hsp92II | CATG | 2 cut(s) | 88, 163 |
| Kzo9I | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| LpnPI | CCDG | 7 cut(s) | 39, 238, 246, 507, 543, 630, 636 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 1 cut(s) | 482 |
| MaeII | ACGT | 3 cut(s) | 266, 454, 558 |
| MaeIII | GTNAC | 3 cut(s) | 12, 267, 625 |
| MalI | GATC | 5 cut(s) | 168, 251, 281, 408, 722 |
| MboI | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| MboII | GAAGA | 4 cut(s) | 20, 192, 224, 647 |
| MflI | RGATCY | 1 cut(s) | 166 |
| MhlI | GDGCHC | 2 cut(s) | 343, 402 |
| MlyI | GAGTC | 2 cut(s) | 20, 26 |
| MmeI | TCCRAC | 2 cut(s) | 76, 118 |
| MnlI | CCTC | 5 cut(s) | 66, 163, 249, 521, 610 |
| MvnI | CGCG | 1 cut(s) | 731 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 377 |
| NdeI | CATATG | 1 cut(s) | 428 |
| NdeII | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| NlaIII | CATG | 2 cut(s) | 88, 163 |
| NlaIV | GGNNCC | 1 cut(s) | 468 |
| NmeAIII | GCCGAG | 1 cut(s) | 592 |
| NmuCI | GTSAC | 1 cut(s) | 12 |
| NspI | RCATGY | 1 cut(s) | 163 |
| PaeR7I | CTCGAG | 2 cut(s) | 57, 630 |
| PceI | AGGCCT | 1 cut(s) | 152 |
| PciI | ACATGT | 1 cut(s) | 159 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 722 |
| PfeI | GAWTC | 2 cut(s) | 539, 691 |
| PkrI | GCNGC | 1 cut(s) | 520 |
| PleI | GAGTC | 2 cut(s) | 19, 26 |
| PpsI | GAGTC | 2 cut(s) | 19, 26 |
| PscI | ACATGT | 1 cut(s) | 159 |
| PsiI | TTATAA | 2 cut(s) | 663, 686 |
| Psp124BI | GAGCTC | 2 cut(s) | 343, 402 |
| Psp1406I | AACGTT | 1 cut(s) | 266 |
| PspN4I | GGNNCC | 1 cut(s) | 468 |
| PspXI | VCTCGAGB | 1 cut(s) | 57 |
| PsuI | RGATCY | 1 cut(s) | 166 |
| SacI | GAGCTC | 2 cut(s) | 343, 402 |
| SatI | GCNGC | 1 cut(s) | 519 |
| Sau3AI | GATC | 5 cut(s) | 166, 249, 279, 406, 720 |
| SchI | GAGTC | 2 cut(s) | 20, 26 |
| SduI | GDGCHC | 2 cut(s) | 343, 402 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| Sfr274I | CTCGAG | 2 cut(s) | 57, 630 |
| SlaI | CTCGAG | 2 cut(s) | 57, 630 |
| SmlI | CTYRAG | 4 cut(s) | 57, 395, 401, 630 |
| SmoI | CTYRAG | 4 cut(s) | 57, 395, 401, 630 |
| SseBI | AGGCCT | 1 cut(s) | 152 |
| SsiI | CCGC | 2 cut(s) | 518, 589 |
| SspMI | CTAG | 1 cut(s) | 482 |
| SstI | GAGCTC | 2 cut(s) | 343, 402 |
| StuI | AGGCCT | 1 cut(s) | 152 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 3 cut(s) | 120, 319, 438 |
| TaiI | ACGT | 3 cut(s) | 269, 457, 561 |
| TaqI | TCGA | 3 cut(s) | 58, 513, 631 |
| TauI | GCSGC | 1 cut(s) | 521 |
| TfiI | GAWTC | 2 cut(s) | 539, 691 |
| TscAI | CASTG | 1 cut(s) | 194 |
| TseFI | GTSAC | 1 cut(s) | 12 |
| Tsp45I | GTSAC | 1 cut(s) | 12 |
| TspDTI | ATGAA | 4 cut(s) | 73, 124, 690, 704 |
| TspRI | CASTG | 1 cut(s) | 194 |
| XapI | RAATTY | 4 cut(s) | 72, 323, 545, 577 |
| XceI | RCATGY | 1 cut(s) | 163 |
| XhoI | CTCGAG | 2 cut(s) | 57, 630 |
| XspI | CTAG | 1 cut(s) | 482 |