gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dirigent | PF03018 | 2 - 126 | 2.1e-44 | Dirigent-like protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 42, 166, 225 |
| AgsI | TTSAA | 1 cut(s) | 244 |
| AluBI | AGCT | 2 cut(s) | 99, 259 |
| AluI | AGCT | 2 cut(s) | 99, 259 |
| Alw21I | GWGCWC | 1 cut(s) | 101 |
| AlwI | GGATC | 1 cut(s) | 142 |
| AoxI | GGCC | 2 cut(s) | 49, 85 |
| AspS9I | GGNCC | 2 cut(s) | 4, 86 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 2 cut(s) | 101, 121 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 101 |
| BccI | CCATC | 2 cut(s) | 160, 217 |
| BfaI | CTAG | 2 cut(s) | 297, 311 |
| BfmI | CTRYAG | 1 cut(s) | 354 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 86 |
| BmiI | GGNNCC | 1 cut(s) | 88 |
| BmsI | GCATC | 1 cut(s) | 340 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 1 cut(s) | 82 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 42, 166, 225 |
| BseDI | CCNNGG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 42, 166, 225 |
| BseMII | CTCAG | 2 cut(s) | 185, 335 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BshFI | GGCC | 2 cut(s) | 51, 87 |
| BsiHKAI | GWGCWC | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 42, 166, 225 |
| BsnI | GGCC | 2 cut(s) | 51, 87 |
| Bsp1286I | GDGCHC | 2 cut(s) | 101, 121 |
| Bsp143I | GATC | 2 cut(s) | 134, 237 |
| BspANI | GGCC | 2 cut(s) | 51, 87 |
| BspCNI | CTCAG | 2 cut(s) | 184, 334 |
| BspLI | GGNNCC | 1 cut(s) | 88 |
| BspPI | GGATC | 1 cut(s) | 142 |
| BssECI | CCNNGG | 1 cut(s) | 82 |
| BssMI | GATC | 2 cut(s) | 134, 237 |
| BssT1I | CCWWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 2 cut(s) | 45, 206 |
| BstDEI | CTNAG | 2 cut(s) | 171, 321 |
| BstKTI | GATC | 2 cut(s) | 137, 240 |
| BstMBI | GATC | 2 cut(s) | 134, 237 |
| BstSFI | CTRYAG | 1 cut(s) | 354 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| BstX2I | RGATCY | 1 cut(s) | 134 |
| BstYI | RGATCY | 1 cut(s) | 134 |
| BsuRI | GGCC | 2 cut(s) | 51, 87 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 86 |
| CseI | GACGC | 1 cut(s) | 324 |
| CviJI | RGCY | 7 cut(s) | 51, 87, 99, 119, 159, 170, 259 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 87, 99, 119, 159, 170, 259 |
| DdeI | CTNAG | 2 cut(s) | 171, 321 |
| DpnI | GATC | 2 cut(s) | 136, 239 |
| DpnII | GATC | 2 cut(s) | 134, 237 |
| Ecl136II | GAGCTC | 1 cut(s) | 99 |
| Eco130I | CCWWGG | 1 cut(s) | 82 |
| Eco24I | GRGCYC | 2 cut(s) | 101, 121 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco53kI | GAGCTC | 1 cut(s) | 99 |
| EcoICRI | GAGCTC | 1 cut(s) | 99 |
| EcoO109I | RGGNCCY | 1 cut(s) | 86 |
| EcoT14I | CCWWGG | 1 cut(s) | 82 |
| EcoT38I | GRGCYC | 2 cut(s) | 101, 121 |
| ErhI | CCWWGG | 1 cut(s) | 82 |
| FaiI | YATR | 8 cut(s) | 132, 201, 215, 294, 306, 356, 366, 375 |
| FriOI | GRGCYC | 2 cut(s) | 101, 121 |
| FspBI | CTAG | 2 cut(s) | 297, 311 |
| HaeIII | GGCC | 2 cut(s) | 51, 87 |
| HgaI | GACGC | 1 cut(s) | 324 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 1 cut(s) | 174 |
| Hpy188III | TCNNGA | 1 cut(s) | 241 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 108 |
| HpyCH4III | ACNGT | 2 cut(s) | 45, 206 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 382 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 321 |
| Kzo9I | GATC | 2 cut(s) | 134, 237 |
| LmnI | GCTCC | 2 cut(s) | 228, 256 |
| LpnPI | CCDG | 5 cut(s) | 95, 173, 176, 233, 274 |
| LweI | GCATC | 1 cut(s) | 340 |
| MaeI | CTAG | 2 cut(s) | 297, 311 |
| MalI | GATC | 2 cut(s) | 136, 239 |
| MboI | GATC | 2 cut(s) | 134, 237 |
| MboII | GAAGA | 1 cut(s) | 161 |
| MflI | RGATCY | 1 cut(s) | 134 |
| MhlI | GDGCHC | 2 cut(s) | 101, 121 |
| MluCI | AATT | 1 cut(s) | 232 |
| MmeI | TCCRAC | 1 cut(s) | 51 |
| MnlI | CCTC | 4 cut(s) | 34, 43, 246, 266 |
| MseI | TTAA | 1 cut(s) | 330 |
| NdeII | GATC | 2 cut(s) | 134, 237 |
| NlaIV | GGNNCC | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 332 |
| Psp124BI | GAGCTC | 1 cut(s) | 101 |
| PspN4I | GGNNCC | 1 cut(s) | 88 |
| PspPI | GGNCC | 2 cut(s) | 4, 86 |
| PsuI | RGATCY | 1 cut(s) | 134 |
| SacI | GAGCTC | 1 cut(s) | 101 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| Sau3AI | GATC | 2 cut(s) | 134, 237 |
| Sau96I | GGNCC | 2 cut(s) | 4, 86 |
| SduI | GDGCHC | 2 cut(s) | 101, 121 |
| SetI | ASST | 3 cut(s) | 101, 261, 293 |
| SfaNI | GCATC | 1 cut(s) | 340 |
| SfcI | CTRYAG | 1 cut(s) | 354 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| Sse9I | AATT | 1 cut(s) | 232 |
| SspMI | CTAG | 2 cut(s) | 297, 311 |
| SstI | GAGCTC | 1 cut(s) | 101 |
| StyI | CCWWGG | 1 cut(s) | 82 |
| TaaI | ACNGT | 2 cut(s) | 45, 206 |
| TaqI | TCGA | 3 cut(s) | 66, 101, 236 |
| TasI | AATT | 1 cut(s) | 232 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 220 |
| XspI | CTAG | 2 cut(s) | 297, 311 |