gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 5 - 131 | 1.5e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 500, 767 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 560 |
| AccI | GTMKAC | 1 cut(s) | 47 |
| AccII | CGCG | 1 cut(s) | 880 |
| AciI | CCGC | 4 cut(s) | 100, 664, 878, 880 |
| AclWI | GGATC | 2 cut(s) | 23, 201 |
| AcoI | YGGCCR | 2 cut(s) | 228, 637 |
| AcsI | RAATTY | 1 cut(s) | 621 |
| AcuI | CTGAAG | 1 cut(s) | 779 |
| AcvI | CACGTG | 2 cut(s) | 69, 557 |
| AcyI | GRCGYC | 1 cut(s) | 719 |
| AdeI | CACNNNGTG | 1 cut(s) | 560 |
| AfaI | GTAC | 2 cut(s) | 142, 577 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 226, 560, 743 |
| AgeI | ACCGGT | 1 cut(s) | 585 |
| AgsI | TTSAA | 3 cut(s) | 263, 353, 490 |
| AjiI | CACGTC | 1 cut(s) | 473 |
| AjnI | CCWGG | 2 cut(s) | 80, 634 |
| AluBI | AGCT | 5 cut(s) | 24, 182, 320, 356, 395 |
| AluI | AGCT | 5 cut(s) | 24, 182, 320, 356, 395 |
| Alw26I | GTCTC | 1 cut(s) | 370 |
| AlwI | GGATC | 2 cut(s) | 23, 201 |
| AoxI | GGCC | 3 cut(s) | 228, 442, 637 |
| ApeKI | GCWGC | 3 cut(s) | 151, 311, 710 |
| ApoI | RAATTY | 1 cut(s) | 621 |
| AsiGI | ACCGGT | 1 cut(s) | 585 |
| AsiSI | GCGATCGC | 1 cut(s) | 210 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 258, 357 |
| AspLEI | GCGC | 1 cut(s) | 568 |
| AspS9I | GGNCC | 2 cut(s) | 284, 851 |
| AsuC2I | CCSGG | 1 cut(s) | 863 |
| AsuHPI | GGTGA | 4 cut(s) | 179, 412, 593, 775 |
| AvaII | GGWCC | 2 cut(s) | 284, 851 |
| BalI | TGGCCA | 1 cut(s) | 639 |
| BanI | GGYRCC | 2 cut(s) | 500, 767 |
| BauI | CACGAG | 3 cut(s) | 321, 438, 459 |
| BbrPI | CACGTG | 2 cut(s) | 69, 557 |
| BbsI | GAAGAC | 2 cut(s) | 714, 873 |
| BbvI | GCAGC | 3 cut(s) | 138, 323, 697 |
| BccI | CCATC | 2 cut(s) | 512, 648 |
| BceAI | ACGGC | 2 cut(s) | 57, 429 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 203, 237 |
| BciT130I | CCWGG | 2 cut(s) | 82, 636 |
| BcnI | CCSGG | 1 cut(s) | 863 |
| BcoDI | GTCTC | 1 cut(s) | 370 |
| BfmI | CTRYAG | 2 cut(s) | 152, 177 |
| BisI | GCNGC | 3 cut(s) | 152, 312, 711 |
| BlsI | GCNGC | 3 cut(s) | 153, 313, 712 |
| BmcAI | AGTACT | 1 cut(s) | 577 |
| Bme1390I | CCNGG | 3 cut(s) | 82, 636, 863 |
| Bme18I | GGWCC | 2 cut(s) | 284, 851 |
| BmgBI | CACGTC | 1 cut(s) | 473 |
| BmgT120I | GGNCC | 2 cut(s) | 284, 851 |
| BmiI | GGNNCC | 2 cut(s) | 502, 769 |
| BmrFI | CCNGG | 3 cut(s) | 82, 636, 863 |
| BmsI | GCATC | 3 cut(s) | 618, 699, 723 |
| BpiI | GAAGAC | 2 cut(s) | 714, 873 |
| BpmI | CTGGAG | 1 cut(s) | 621 |
| BpuEI | CTTGAG | 1 cut(s) | 711 |
| BpuMI | CCSGG | 1 cut(s) | 863 |
| BsaAI | YACGTR | 2 cut(s) | 69, 557 |
| BsaHI | GRCGYC | 1 cut(s) | 719 |
| BsaJI | CCNNGG | 5 cut(s) | 81, 280, 445, 714, 878 |
| BsaWI | WCCGGW | 1 cut(s) | 585 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 226, 560, 743 |
| Bse118I | RCCGGY | 1 cut(s) | 585 |
| Bse1I | ACTGG | 4 cut(s) | 239, 261, 583, 829 |
| Bse3DI | GCAATG | 1 cut(s) | 472 |
| BseBI | CCWGG | 2 cut(s) | 82, 636 |
| BseDI | CCNNGG | 5 cut(s) | 81, 280, 445, 714, 878 |
| BseGI | GGATG | 3 cut(s) | 640, 672, 690 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 226, 560, 743 |
| BseMI | GCAATG | 1 cut(s) | 472 |
| BseMII | CTCAG | 1 cut(s) | 22 |
| BseNI | ACTGG | 4 cut(s) | 239, 261, 583, 829 |
| BseXI | GCAGC | 3 cut(s) | 138, 323, 697 |
| Bsh1236I | CGCG | 1 cut(s) | 880 |
| Bsh1285I | CGRYCG | 1 cut(s) | 210 |
| BshFI | GGCC | 3 cut(s) | 230, 444, 639 |
| BshNI | GGYRCC | 2 cut(s) | 500, 767 |
| BshTI | ACCGGT | 1 cut(s) | 585 |
| BsiEI | CGRYCG | 1 cut(s) | 210 |
| BsiSI | CCGG | 4 cut(s) | 231, 586, 644, 863 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 226, 560, 743 |
| BsmAI | GTCTC | 1 cut(s) | 370 |
| BsmBI | CGTCTC | 1 cut(s) | 370 |
| BsmI | GAATGC | 2 cut(s) | 208, 313 |
| BsnI | GGCC | 3 cut(s) | 230, 444, 639 |
| Bsp143I | GATC | 4 cut(s) | 15, 193, 207, 417 |
| Bsp19I | CCATGG | 1 cut(s) | 714 |
| BspACI | CCGC | 4 cut(s) | 100, 664, 878, 880 |
| BspANI | GGCC | 3 cut(s) | 230, 444, 639 |
| BspCNI | CTCAG | 1 cut(s) | 21 |
| BspFNI | CGCG | 1 cut(s) | 880 |
| BspLI | GGNNCC | 2 cut(s) | 502, 769 |
| BspMAI | CTGCAG | 1 cut(s) | 156 |
| BspPI | GGATC | 2 cut(s) | 23, 201 |
| BspQI | GCTCTTC | 2 cut(s) | 363, 487 |
| BspT107I | GGYRCC | 2 cut(s) | 500, 767 |
| BsrDI | GCAATG | 1 cut(s) | 472 |
| BsrFI | RCCGGY | 1 cut(s) | 585 |
| BsrI | ACTGG | 4 cut(s) | 239, 261, 583, 829 |
| BssAI | RCCGGY | 1 cut(s) | 585 |
| BssECI | CCNNGG | 5 cut(s) | 81, 280, 445, 714, 878 |
| BssMI | GATC | 4 cut(s) | 15, 193, 207, 417 |
| BssNI | GRCGYC | 1 cut(s) | 719 |
| BssSI | CACGAG | 3 cut(s) | 321, 438, 459 |
| BssT1I | CCWWGG | 2 cut(s) | 280, 714 |
| Bst2BI | CACGAG | 3 cut(s) | 321, 438, 459 |
| Bst2UI | CCWGG | 2 cut(s) | 82, 636 |
| Bst4CI | ACNGT | 3 cut(s) | 52, 304, 656 |
| Bst6I | CTCTTC | 2 cut(s) | 363, 487 |
| BstACI | GRCGYC | 1 cut(s) | 719 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 615 |
| BstBAI | YACGTR | 2 cut(s) | 69, 557 |
| BstC8I | GCNNGC | 3 cut(s) | 58, 393, 570 |
| BstDEI | CTNAG | 1 cut(s) | 8 |
| BstDSI | CCRYGG | 3 cut(s) | 445, 714, 878 |
| BstEII | GGTNACC | 2 cut(s) | 167, 581 |
| BstF5I | GGATG | 3 cut(s) | 640, 672, 690 |
| BstFNI | CGCG | 1 cut(s) | 880 |
| BstHHI | GCGC | 1 cut(s) | 568 |
| BstKTI | GATC | 4 cut(s) | 18, 196, 210, 420 |
| BstMAI | GTCTC | 1 cut(s) | 370 |
| BstMBI | GATC | 4 cut(s) | 15, 193, 207, 417 |
| BstMCI | CGRYCG | 1 cut(s) | 210 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 317, 462, 615, 636, 716 |
| BstNI | CCWGG | 2 cut(s) | 82, 636 |
| BstPI | GGTNACC | 2 cut(s) | 167, 581 |
| BstSCI | CCNGG | 3 cut(s) | 80, 634, 861 |
| BstSFI | CTRYAG | 2 cut(s) | 152, 177 |
| BstUI | CGCG | 1 cut(s) | 880 |
| BstV1I | GCAGC | 3 cut(s) | 138, 323, 697 |
| BstV2I | GAAGAC | 2 cut(s) | 714, 873 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BsuRI | GGCC | 3 cut(s) | 230, 444, 639 |
| BtgI | CCRYGG | 3 cut(s) | 445, 714, 878 |
| BtrI | CACGTC | 1 cut(s) | 473 |
| BtsCI | GGATG | 3 cut(s) | 640, 672, 690 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 822 |
| Cac8I | GCNNGC | 3 cut(s) | 58, 393, 570 |
| CfoI | GCGC | 1 cut(s) | 568 |
| Cfr10I | RCCGGY | 1 cut(s) | 585 |
| Cfr13I | GGNCC | 2 cut(s) | 284, 851 |
| Cfr42I | CCGCGG | 1 cut(s) | 881 |
| CseI | GACGC | 4 cut(s) | 96, 696, 708, 878 |
| Csp6I | GTAC | 2 cut(s) | 141, 576 |
| CspAI | ACCGGT | 1 cut(s) | 585 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 454, 478, 489, 513, 538, 573, 823, 858 |
| CviAII | CATG | 2 cut(s) | 715, 779 |
| CviQI | GTAC | 2 cut(s) | 141, 576 |
| DdeI | CTNAG | 1 cut(s) | 8 |
| DpnI | GATC | 4 cut(s) | 17, 195, 209, 419 |
| DpnII | GATC | 4 cut(s) | 15, 193, 207, 417 |
| DraI | TTTAAA | 1 cut(s) | 273 |
| DraIII | CACNNNGTG | 1 cut(s) | 560 |
| EaeI | YGGCCR | 2 cut(s) | 228, 637 |
| Eam1104I | CTCTTC | 2 cut(s) | 363, 487 |
| EarI | CTCTTC | 2 cut(s) | 363, 487 |
| Eco130I | CCWWGG | 2 cut(s) | 280, 714 |
| Eco47I | GGWCC | 2 cut(s) | 284, 851 |
| Eco57I | CTGAAG | 1 cut(s) | 779 |
| Eco72I | CACGTG | 2 cut(s) | 69, 557 |
| Eco91I | GGTNACC | 2 cut(s) | 167, 581 |
| EcoO109I | RGGNCCY | 1 cut(s) | 851 |
| EcoO65I | GGTNACC | 2 cut(s) | 167, 581 |
| EcoRII | CCWGG | 2 cut(s) | 80, 634 |
| EcoT14I | CCWWGG | 2 cut(s) | 280, 714 |
| ErhI | CCWWGG | 2 cut(s) | 280, 714 |
| Esp3I | CGTCTC | 1 cut(s) | 370 |
| FaeI | CATG | 2 cut(s) | 718, 782 |
| FaiI | YATR | 7 cut(s) | 105, 128, 200, 533, 681, 716, 780 |
| FatI | CATG | 2 cut(s) | 714, 778 |
| FauI | CCCGC | 1 cut(s) | 873 |
| FblI | GTMKAC | 1 cut(s) | 47 |
| Fnu4HI | GCNGC | 3 cut(s) | 152, 312, 711 |
| FokI | GGATG | 3 cut(s) | 627, 677, 679 |
| Fsp4HI | GCNGC | 3 cut(s) | 152, 312, 711 |
| GlaI | GCGC | 1 cut(s) | 567 |
| GluI | GCNGC | 3 cut(s) | 152, 312, 711 |
| GsuI | CTGGAG | 1 cut(s) | 621 |
| HaeIII | GGCC | 3 cut(s) | 230, 444, 639 |
| HapII | CCGG | 4 cut(s) | 231, 586, 644, 863 |
| HgaI | GACGC | 4 cut(s) | 96, 696, 708, 878 |
| HhaI | GCGC | 1 cut(s) | 568 |
| Hin1I | GRCGYC | 1 cut(s) | 719 |
| Hin1II | CATG | 2 cut(s) | 718, 782 |
| Hin6I | GCGC | 1 cut(s) | 566 |
| HinP1I | GCGC | 1 cut(s) | 566 |
| HincII | GTYRAC | 2 cut(s) | 48, 111 |
| HindII | GTYRAC | 2 cut(s) | 48, 111 |
| HinfI | GANTC | 3 cut(s) | 4, 121, 799 |
| HpaII | CCGG | 4 cut(s) | 231, 586, 644, 863 |
| HphI | GGTGA | 4 cut(s) | 179, 412, 593, 775 |
| Hpy166II | GTNNAC | 2 cut(s) | 48, 111 |
| Hpy188I | TCNGA | 2 cut(s) | 417, 798 |
| Hpy188III | TCNNGA | 6 cut(s) | 295, 323, 438, 600, 650, 758 |
| Hpy8I | GTNNAC | 2 cut(s) | 48, 111 |
| HpyAV | CCTTC | 2 cut(s) | 677, 803 |
| HpyCH4III | ACNGT | 3 cut(s) | 52, 304, 656 |
| HpyCH4IV | ACGT | 4 cut(s) | 68, 434, 472, 556 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 154, 311, 572, 591, 806 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 317, 462, 615, 636, 716 |
| HpyF3I | CTNAG | 1 cut(s) | 8 |
| HpySE526I | ACGT | 4 cut(s) | 68, 434, 472, 556 |
| Hsp92I | GRCGYC | 1 cut(s) | 719 |
| Hsp92II | CATG | 2 cut(s) | 718, 782 |
| HspAI | GCGC | 1 cut(s) | 566 |
| KspI | CCGCGG | 1 cut(s) | 881 |
| Kzo9I | GATC | 4 cut(s) | 15, 193, 207, 417 |
| LguI | GCTCTTC | 2 cut(s) | 363, 487 |
| LmnI | GCTCC | 2 cut(s) | 388, 418 |
| Lsp1109I | GCAGC | 3 cut(s) | 138, 323, 697 |
| LweI | GCATC | 3 cut(s) | 618, 699, 723 |
| MaeII | ACGT | 4 cut(s) | 68, 434, 472, 556 |
| MaeIII | GTNAC | 8 cut(s) | 167, 400, 430, 435, 539, 581, 656, 781 |
| MalI | GATC | 4 cut(s) | 17, 195, 209, 419 |
| MboI | GATC | 4 cut(s) | 15, 193, 207, 417 |
| MboII | GAAGA | 5 cut(s) | 172, 350, 474, 714, 878 |
| MlsI | TGGCCA | 1 cut(s) | 639 |
| MluCI | AATT | 3 cut(s) | 264, 621, 748 |
| MluNI | TGGCCA | 1 cut(s) | 639 |
| MmeI | TCCRAC | 1 cut(s) | 368 |
| MnlI | CCTC | 5 cut(s) | 182, 434, 470, 546, 864 |
| Mox20I | TGGCCA | 1 cut(s) | 639 |
| MroXI | GAANNNNTTC | 2 cut(s) | 258, 357 |
| MscI | TGGCCA | 1 cut(s) | 639 |
| MseI | TTAA | 1 cut(s) | 272 |
| Msp20I | TGGCCA | 1 cut(s) | 639 |
| MspA1I | CMGCKG | 3 cut(s) | 100, 664, 880 |
| MspI | CCGG | 4 cut(s) | 231, 586, 644, 863 |
| MspR9I | CCNGG | 3 cut(s) | 82, 636, 863 |
| Mva1269I | GAATGC | 2 cut(s) | 208, 313 |
| MvaI | CCWGG | 2 cut(s) | 82, 636 |
| MvnI | CGCG | 1 cut(s) | 880 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 317, 462, 615, 636, 716 |
| NciI | CCSGG | 1 cut(s) | 863 |
| NcoI | CCATGG | 1 cut(s) | 714 |
| NdeII | GATC | 4 cut(s) | 15, 193, 207, 417 |
| NlaIII | CATG | 2 cut(s) | 718, 782 |
| NlaIV | GGNNCC | 2 cut(s) | 502, 769 |
| NmuCI | GTSAC | 5 cut(s) | 167, 400, 435, 581, 781 |
| PciSI | GCTCTTC | 2 cut(s) | 363, 487 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 70 |
| PctI | GAATGC | 2 cut(s) | 208, 313 |
| PdmI | GAANNNNTTC | 2 cut(s) | 258, 357 |
| PfeI | GAWTC | 3 cut(s) | 4, 121, 799 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 560 |
| PinAI | ACCGGT | 1 cut(s) | 585 |
| PkrI | GCNGC | 3 cut(s) | 153, 313, 712 |
| Ple19I | CGATCG | 1 cut(s) | 210 |
| PmaCI | CACGTG | 2 cut(s) | 69, 557 |
| PmlI | CACGTG | 2 cut(s) | 69, 557 |
| Ppu21I | YACGTR | 2 cut(s) | 69, 557 |
| PpuMI | RGGWCCY | 1 cut(s) | 851 |
| Psp5II | RGGWCCY | 1 cut(s) | 851 |
| Psp6I | CCWGG | 2 cut(s) | 80, 634 |
| PspCI | CACGTG | 2 cut(s) | 69, 557 |
| PspEI | GGTNACC | 2 cut(s) | 167, 581 |
| PspGI | CCWGG | 2 cut(s) | 80, 634 |
| PspN4I | GGNNCC | 2 cut(s) | 502, 769 |
| PspPI | GGNCC | 2 cut(s) | 284, 851 |
| PspPPI | RGGWCCY | 1 cut(s) | 851 |
| PstI | CTGCAG | 1 cut(s) | 156 |
| PvuI | CGATCG | 1 cut(s) | 210 |
| RgaI | GCGATCGC | 1 cut(s) | 210 |
| RsaI | GTAC | 2 cut(s) | 142, 577 |
| RsaNI | GTAC | 2 cut(s) | 141, 576 |
| SacII | CCGCGG | 1 cut(s) | 881 |
| SalI | GTCGAC | 1 cut(s) | 46 |
| SapI | GCTCTTC | 2 cut(s) | 363, 487 |
| SaqAI | TTAA | 1 cut(s) | 272 |
| SatI | GCNGC | 3 cut(s) | 152, 312, 711 |
| Sau3AI | GATC | 4 cut(s) | 15, 193, 207, 417 |
| Sau96I | GGNCC | 2 cut(s) | 284, 851 |
| ScaI | AGTACT | 1 cut(s) | 577 |
| ScrFI | CCNGG | 3 cut(s) | 82, 636, 863 |
| SfaAI | GCGATCGC | 1 cut(s) | 210 |
| SfaNI | GCATC | 3 cut(s) | 618, 699, 723 |
| SfcI | CTRYAG | 2 cut(s) | 152, 177 |
| Sfr303I | CCGCGG | 1 cut(s) | 881 |
| SgfI | GCGATCGC | 1 cut(s) | 210 |
| SgrBI | CCGCGG | 1 cut(s) | 881 |
| SinI | GGWCC | 2 cut(s) | 284, 851 |
| SmlI | CTYRAG | 1 cut(s) | 726 |
| SmoI | CTYRAG | 1 cut(s) | 726 |
| Sse9I | AATT | 3 cut(s) | 264, 621, 748 |
| SsiI | CCGC | 4 cut(s) | 100, 664, 878, 880 |
| StyD4I | CCNGG | 3 cut(s) | 80, 634, 861 |
| StyI | CCWWGG | 2 cut(s) | 280, 714 |
| TaaI | ACNGT | 3 cut(s) | 52, 304, 656 |
| TaiI | ACGT | 4 cut(s) | 71, 437, 475, 559 |
| TaqI | TCGA | 2 cut(s) | 47, 294 |
| TasI | AATT | 3 cut(s) | 264, 621, 748 |
| TatI | WGTACW | 1 cut(s) | 575 |
| TfiI | GAWTC | 3 cut(s) | 4, 121, 799 |
| Tru1I | TTAA | 1 cut(s) | 272 |
| Tru9I | TTAA | 1 cut(s) | 272 |
| TscAI | CASTG | 2 cut(s) | 37, 829 |
| TseFI | GTSAC | 5 cut(s) | 167, 400, 435, 581, 781 |
| TseI | GCWGC | 3 cut(s) | 151, 311, 710 |
| Tsp45I | GTSAC | 5 cut(s) | 167, 400, 435, 581, 781 |
| TspDTI | ATGAA | 4 cut(s) | 215, 267, 683, 696 |
| TspGWI | ACGGA | 2 cut(s) | 386, 401 |
| TspRI | CASTG | 2 cut(s) | 37, 829 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 560 |
| VpaK11BI | GGWCC | 2 cut(s) | 284, 851 |
| XapI | RAATTY | 1 cut(s) | 621 |
| XmiI | GTMKAC | 1 cut(s) | 47 |
| XmnI | GAANNNNTTC | 2 cut(s) | 258, 357 |
| ZrmI | AGTACT | 1 cut(s) | 577 |