GAG-pre-integrase domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 100 | 2.8e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfaI | GTAC | 2 cut(s) | 54, 215 |
| AflIII | ACRYGT | 1 cut(s) | 162 |
| AgsI | TTSAA | 4 cut(s) | 16, 116, 265, 308 |
| AluBI | AGCT | 1 cut(s) | 290 |
| AluI | AGCT | 1 cut(s) | 290 |
| Alw26I | GTCTC | 2 cut(s) | 262, 282 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| BbsI | GAAGAC | 1 cut(s) | 180 |
| BclI | TGATCA | 1 cut(s) | 120 |
| BcoDI | GTCTC | 2 cut(s) | 262, 282 |
| BfaI | CTAG | 1 cut(s) | 30 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BpiI | GAAGAC | 1 cut(s) | 180 |
| BsaBI | GATNNNNATC | 1 cut(s) | 108 |
| BsaI | GGTCTC | 1 cut(s) | 282 |
| Bse8I | GATNNNNATC | 1 cut(s) | 108 |
| BseJI | GATNNNNATC | 1 cut(s) | 108 |
| BseMII | CTCAG | 2 cut(s) | 286, 293 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BsmAI | GTCTC | 2 cut(s) | 262, 282 |
| Bso31I | GGTCTC | 1 cut(s) | 282 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp1407I | TGTACA | 1 cut(s) | 52 |
| Bsp143I | GATC | 2 cut(s) | 120, 136 |
| BspCNI | CTCAG | 2 cut(s) | 285, 292 |
| BspTNI | GGTCTC | 1 cut(s) | 282 |
| BsrGI | TGTACA | 1 cut(s) | 52 |
| BssMI | GATC | 2 cut(s) | 120, 136 |
| BstAUI | TGTACA | 1 cut(s) | 52 |
| BstDEI | CTNAG | 2 cut(s) | 272, 279 |
| BstKTI | GATC | 2 cut(s) | 123, 139 |
| BstMAI | GTCTC | 2 cut(s) | 262, 282 |
| BstMBI | GATC | 2 cut(s) | 120, 136 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstV2I | GAAGAC | 1 cut(s) | 180 |
| Csp6I | GTAC | 2 cut(s) | 53, 214 |
| CviAII | CATG | 2 cut(s) | 34, 163 |
| CviJI | RGCY | 3 cut(s) | 146, 230, 290 |
| CviKI_1 | RGCY | 3 cut(s) | 146, 230, 290 |
| CviQI | GTAC | 2 cut(s) | 53, 214 |
| DdeI | CTNAG | 2 cut(s) | 272, 279 |
| DpnI | GATC | 2 cut(s) | 122, 138 |
| DpnII | GATC | 2 cut(s) | 120, 136 |
| Eco31I | GGTCTC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| FaeI | CATG | 2 cut(s) | 37, 166 |
| FaiI | YATR | 3 cut(s) | 35, 164, 224 |
| FatI | CATG | 2 cut(s) | 33, 162 |
| FbaI | TGATCA | 1 cut(s) | 120 |
| FspBI | CTAG | 1 cut(s) | 30 |
| Hin1II | CATG | 2 cut(s) | 37, 166 |
| HinfI | GANTC | 2 cut(s) | 24, 95 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 203 |
| Hpy188I | TCNGA | 1 cut(s) | 169 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 203 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| HpyF3I | CTNAG | 2 cut(s) | 272, 279 |
| Hsp92II | CATG | 2 cut(s) | 37, 166 |
| Ksp22I | TGATCA | 1 cut(s) | 120 |
| Kzo9I | GATC | 2 cut(s) | 120, 136 |
| LpnPI | CCDG | 2 cut(s) | 52, 259 |
| MaeI | CTAG | 1 cut(s) | 30 |
| MalI | GATC | 2 cut(s) | 122, 138 |
| MboI | GATC | 2 cut(s) | 120, 136 |
| MboII | GAAGA | 4 cut(s) | 73, 104, 185, 305 |
| MluCI | AATT | 1 cut(s) | 150 |
| MnlI | CCTC | 2 cut(s) | 220, 233 |
| MseI | TTAA | 4 cut(s) | 9, 81, 195, 284 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NdeII | GATC | 2 cut(s) | 120, 136 |
| NlaIII | CATG | 2 cut(s) | 37, 166 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PciI | ACATGT | 1 cut(s) | 162 |
| PfeI | GAWTC | 2 cut(s) | 24, 95 |
| PscI | ACATGT | 1 cut(s) | 162 |
| RsaI | GTAC | 2 cut(s) | 54, 215 |
| RsaNI | GTAC | 2 cut(s) | 53, 214 |
| SaqAI | TTAA | 4 cut(s) | 9, 81, 195, 284 |
| Sau3AI | GATC | 2 cut(s) | 120, 136 |
| SetI | ASST | 4 cut(s) | 202, 255, 278, 292 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| SgeI | CNNG | 9 cut(s) | 25, 42, 46, 51, 175, 221, 223, 266, 286 |
| Sse9I | AATT | 1 cut(s) | 150 |
| SspI | AATATT | 1 cut(s) | 49 |
| SspMI | CTAG | 1 cut(s) | 30 |
| TasI | AATT | 1 cut(s) | 150 |
| TatI | WGTACW | 2 cut(s) | 52, 213 |
| TfiI | GAWTC | 2 cut(s) | 24, 95 |
| Tru1I | TTAA | 4 cut(s) | 9, 81, 195, 284 |
| Tru9I | TTAA | 4 cut(s) | 9, 81, 195, 284 |
| TspDTI | ATGAA | 3 cut(s) | 59, 74, 186 |
| XceI | RCATGY | 1 cut(s) | 166 |
| XspI | CTAG | 1 cut(s) | 30 |