gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 47 |
| AciI | CCGC | 4 cut(s) | 180, 246, 354, 494 |
| AclWI | GGATC | 3 cut(s) | 208, 213, 233 |
| AcuI | CTGAAG | 1 cut(s) | 533 |
| AfeI | AGCGCT | 1 cut(s) | 311 |
| AgsI | TTSAA | 2 cut(s) | 91, 572 |
| AjnI | CCWGG | 1 cut(s) | 521 |
| AluBI | AGCT | 2 cut(s) | 349, 361 |
| AluI | AGCT | 2 cut(s) | 349, 361 |
| Alw26I | GTCTC | 1 cut(s) | 330 |
| AlwI | GGATC | 3 cut(s) | 208, 213, 233 |
| Aor51HI | AGCGCT | 1 cut(s) | 311 |
| ApeKI | GCWGC | 2 cut(s) | 346, 444 |
| AspLEI | GCGC | 1 cut(s) | 312 |
| AsuHPI | GGTGA | 4 cut(s) | 142, 368, 472, 526 |
| BanI | GGYRCC | 1 cut(s) | 47 |
| BbvI | GCAGC | 2 cut(s) | 358, 456 |
| BccI | CCATC | 3 cut(s) | 38, 149, 395 |
| BceAI | ACGGC | 2 cut(s) | 247, 525 |
| BciT130I | CCWGG | 1 cut(s) | 523 |
| BcoDI | GTCTC | 1 cut(s) | 330 |
| BfoI | RGCGCY | 1 cut(s) | 313 |
| BisI | GCNGC | 3 cut(s) | 246, 347, 445 |
| BlsI | GCNGC | 3 cut(s) | 247, 348, 446 |
| Bme1390I | CCNGG | 1 cut(s) | 523 |
| BmiI | GGNNCC | 2 cut(s) | 49, 527 |
| BmrFI | CCNGG | 1 cut(s) | 523 |
| BmsI | GCATC | 1 cut(s) | 178 |
| BoxI | GACNNNNGTC | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 1 cut(s) | 258 |
| Bse1I | ACTGG | 1 cut(s) | 483 |
| Bse3DI | GCAATG | 1 cut(s) | 417 |
| BseBI | CCWGG | 1 cut(s) | 523 |
| BseDI | CCNNGG | 1 cut(s) | 258 |
| BseGI | GGATG | 2 cut(s) | 78, 216 |
| BseMI | GCAATG | 1 cut(s) | 417 |
| BseMII | CTCAG | 1 cut(s) | 335 |
| BseNI | ACTGG | 1 cut(s) | 483 |
| BseRI | GAGGAG | 1 cut(s) | 388 |
| BseXI | GCAGC | 2 cut(s) | 358, 456 |
| BshNI | GGYRCC | 1 cut(s) | 47 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BsmAI | GTCTC | 1 cut(s) | 330 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BsmI | GAATGC | 1 cut(s) | 182 |
| Bsp143I | GATC | 3 cut(s) | 205, 213, 225 |
| Bsp19I | CCATGG | 1 cut(s) | 258 |
| BspACI | CCGC | 4 cut(s) | 180, 246, 354, 494 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BspLI | GGNNCC | 2 cut(s) | 49, 527 |
| BspPI | GGATC | 3 cut(s) | 208, 213, 233 |
| BspT107I | GGYRCC | 1 cut(s) | 47 |
| BsrDI | GCAATG | 1 cut(s) | 417 |
| BsrI | ACTGG | 1 cut(s) | 483 |
| BssECI | CCNNGG | 1 cut(s) | 258 |
| BssMI | GATC | 3 cut(s) | 205, 213, 225 |
| BssT1I | CCWWGG | 1 cut(s) | 258 |
| Bst2UI | CCWGG | 1 cut(s) | 523 |
| Bst4CI | ACNGT | 3 cut(s) | 172, 317, 475 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 2 cut(s) | 69, 442 |
| BstDEI | CTNAG | 2 cut(s) | 321, 431 |
| BstDSI | CCRYGG | 1 cut(s) | 258 |
| BstF5I | GGATG | 2 cut(s) | 78, 216 |
| BstH2I | RGCGCY | 1 cut(s) | 313 |
| BstHHI | GCGC | 1 cut(s) | 312 |
| BstKTI | GATC | 3 cut(s) | 208, 216, 228 |
| BstMAI | GTCTC | 1 cut(s) | 330 |
| BstMBI | GATC | 3 cut(s) | 205, 213, 225 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 1 cut(s) | 523 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 476 |
| BstSCI | CCNGG | 1 cut(s) | 521 |
| BstV1I | GCAGC | 2 cut(s) | 358, 456 |
| BtgI | CCRYGG | 1 cut(s) | 258 |
| BtsCI | GGATG | 2 cut(s) | 78, 216 |
| Cac8I | GCNNGC | 2 cut(s) | 69, 442 |
| CfoI | GCGC | 1 cut(s) | 312 |
| CviAII | CATG | 6 cut(s) | 106, 113, 132, 192, 259, 461 |
| DdeI | CTNAG | 2 cut(s) | 321, 431 |
| DpnI | GATC | 3 cut(s) | 207, 215, 227 |
| DpnII | GATC | 3 cut(s) | 205, 213, 225 |
| Eco130I | CCWWGG | 1 cut(s) | 258 |
| Eco32I | GATATC | 1 cut(s) | 382 |
| Eco47III | AGCGCT | 1 cut(s) | 311 |
| Eco57I | CTGAAG | 1 cut(s) | 533 |
| EcoRII | CCWGG | 1 cut(s) | 521 |
| EcoRV | GATATC | 1 cut(s) | 382 |
| EcoT14I | CCWWGG | 1 cut(s) | 258 |
| EcoT22I | ATGCAT | 1 cut(s) | 193 |
| ErhI | CCWWGG | 1 cut(s) | 258 |
| FaeI | CATG | 6 cut(s) | 109, 116, 135, 195, 262, 464 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FatI | CATG | 6 cut(s) | 105, 112, 131, 191, 258, 460 |
| FauI | CCCGC | 2 cut(s) | 187, 501 |
| Fnu4HI | GCNGC | 3 cut(s) | 246, 347, 445 |
| FokI | GGATG | 2 cut(s) | 65, 223 |
| Fsp4HI | GCNGC | 3 cut(s) | 246, 347, 445 |
| GlaI | GCGC | 1 cut(s) | 311 |
| GluI | GCNGC | 3 cut(s) | 246, 347, 445 |
| HaeII | RGCGCY | 1 cut(s) | 313 |
| HhaI | GCGC | 1 cut(s) | 312 |
| Hin1II | CATG | 6 cut(s) | 109, 116, 135, 195, 262, 464 |
| Hin6I | GCGC | 1 cut(s) | 310 |
| HinP1I | GCGC | 1 cut(s) | 310 |
| HphI | GGTGA | 4 cut(s) | 142, 368, 472, 526 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 281 |
| Hpy188I | TCNGA | 3 cut(s) | 210, 457, 552 |
| Hpy188III | TCNNGA | 2 cut(s) | 88, 217 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 281 |
| HpyCH4III | ACNGT | 3 cut(s) | 172, 317, 475 |
| HpyCH4IV | ACGT | 1 cut(s) | 20 |
| HpyCH4V | TGCA | 3 cut(s) | 191, 346, 422 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 2 cut(s) | 321, 431 |
| HpySE526I | ACGT | 1 cut(s) | 20 |
| Hsp92II | CATG | 6 cut(s) | 109, 116, 135, 195, 262, 464 |
| HspAI | GCGC | 1 cut(s) | 310 |
| Kzo9I | GATC | 3 cut(s) | 205, 213, 225 |
| LpnPI | CCDG | 6 cut(s) | 150, 230, 426, 496, 508, 535 |
| Lsp1109I | GCAGC | 2 cut(s) | 358, 456 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeII | ACGT | 1 cut(s) | 20 |
| MaeIII | GTNAC | 2 cut(s) | 469, 478 |
| MalI | GATC | 3 cut(s) | 207, 215, 227 |
| MboI | GATC | 3 cut(s) | 205, 213, 225 |
| MboII | GAAGA | 3 cut(s) | 137, 356, 539 |
| MluCI | AATT | 3 cut(s) | 52, 487, 578 |
| MmeI | TCCRAC | 2 cut(s) | 203, 282 |
| MnlI | CCTC | 6 cut(s) | 25, 69, 196, 280, 366, 540 |
| Mph1103I | ATGCAT | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 174, 198 |
| MspA1I | CMGCKG | 1 cut(s) | 248 |
| MspR9I | CCNGG | 1 cut(s) | 523 |
| Mva1269I | GAATGC | 1 cut(s) | 182 |
| MvaI | CCWGG | 1 cut(s) | 523 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NcoI | CCATGG | 1 cut(s) | 258 |
| NdeII | GATC | 3 cut(s) | 205, 213, 225 |
| NlaIII | CATG | 6 cut(s) | 109, 116, 135, 195, 262, 464 |
| NlaIV | GGNNCC | 2 cut(s) | 49, 527 |
| NmeAIII | GCCGAG | 1 cut(s) | 371 |
| NmuCI | GTSAC | 2 cut(s) | 469, 478 |
| NsiI | ATGCAT | 1 cut(s) | 193 |
| PctI | GAATGC | 1 cut(s) | 182 |
| PkrI | GCNGC | 3 cut(s) | 247, 348, 446 |
| PshAI | GACNNNNGTC | 1 cut(s) | 476 |
| Psp6I | CCWGG | 1 cut(s) | 521 |
| PspGI | CCWGG | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 2 cut(s) | 49, 527 |
| SaqAI | TTAA | 2 cut(s) | 174, 198 |
| SatI | GCNGC | 3 cut(s) | 246, 347, 445 |
| Sau3AI | GATC | 3 cut(s) | 205, 213, 225 |
| ScrFI | CCNGG | 1 cut(s) | 523 |
| SetI | ASST | 7 cut(s) | 17, 23, 351, 363, 402, 524, 539 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| Sse9I | AATT | 3 cut(s) | 52, 487, 578 |
| SsiI | CCGC | 4 cut(s) | 180, 246, 354, 494 |
| StyD4I | CCNGG | 1 cut(s) | 521 |
| StyI | CCWWGG | 1 cut(s) | 258 |
| TaaI | ACNGT | 3 cut(s) | 172, 317, 475 |
| TaiI | ACGT | 1 cut(s) | 23 |
| TaqI | TCGA | 2 cut(s) | 42, 186 |
| TasI | AATT | 3 cut(s) | 52, 487, 578 |
| TauI | GCSGC | 1 cut(s) | 248 |
| Tru1I | TTAA | 2 cut(s) | 174, 198 |
| Tru9I | TTAA | 2 cut(s) | 174, 198 |
| TseFI | GTSAC | 2 cut(s) | 469, 478 |
| TseI | GCWGC | 2 cut(s) | 346, 444 |
| Tsp45I | GTSAC | 2 cut(s) | 469, 478 |
| TspGWI | ACGGA | 1 cut(s) | 298 |
| Zsp2I | ATGCAT | 1 cut(s) | 193 |