gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 821 |
| AccII | CGCG | 1 cut(s) | 999 |
| AciI | CCGC | 4 cut(s) | 76, 982, 997, 999 |
| AclWI | GGATC | 2 cut(s) | 978, 982 |
| AcoI | YGGCCR | 2 cut(s) | 297, 784 |
| AcsI | RAATTY | 3 cut(s) | 98, 154, 552 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AcvI | CACGTG | 1 cut(s) | 236 |
| AfaI | GTAC | 2 cut(s) | 543, 1022 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 395 |
| AflII | CTTAAG | 1 cut(s) | 974 |
| AgsI | TTSAA | 2 cut(s) | 154, 526 |
| AjiI | CACGTC | 1 cut(s) | 434 |
| AjnI | CCWGG | 1 cut(s) | 966 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| AluBI | AGCT | 2 cut(s) | 23, 182 |
| AluI | AGCT | 2 cut(s) | 23, 182 |
| Alw26I | GTCTC | 3 cut(s) | 217, 399, 423 |
| AlwI | GGATC | 2 cut(s) | 978, 982 |
| AoxI | GGCC | 4 cut(s) | 258, 297, 382, 784 |
| ApeKI | GCWGC | 1 cut(s) | 650 |
| ApoI | RAATTY | 3 cut(s) | 98, 154, 552 |
| AspLEI | GCGC | 1 cut(s) | 764 |
| AspS9I | GGNCC | 1 cut(s) | 258 |
| AsuC2I | CCSGG | 1 cut(s) | 374 |
| AsuHPI | GGTGA | 3 cut(s) | 107, 686, 709 |
| BalI | TGGCCA | 2 cut(s) | 299, 786 |
| BauI | CACGAG | 4 cut(s) | 24, 360, 456, 747 |
| BbrPI | CACGTG | 1 cut(s) | 236 |
| BbvI | GCAGC | 1 cut(s) | 637 |
| BccI | CCATC | 1 cut(s) | 685 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 320, 354 |
| BciT130I | CCWGG | 1 cut(s) | 968 |
| BcnI | CCSGG | 1 cut(s) | 374 |
| BcoDI | GTCTC | 3 cut(s) | 217, 399, 423 |
| BfaI | CTAG | 1 cut(s) | 471 |
| BfoI | RGCGCY | 1 cut(s) | 765 |
| BfrI | CTTAAG | 1 cut(s) | 974 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BglII | AGATCT | 1 cut(s) | 121 |
| BisI | GCNGC | 1 cut(s) | 651 |
| BlsI | GCNGC | 1 cut(s) | 652 |
| Bme1390I | CCNGG | 2 cut(s) | 374, 968 |
| BmgBI | CACGTC | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 1 cut(s) | 258 |
| BmiI | GGNNCC | 4 cut(s) | 259, 505, 624, 703 |
| BmrFI | CCNGG | 2 cut(s) | 374, 968 |
| BmsI | GCATC | 5 cut(s) | 87, 220, 662, 715, 969 |
| BpmI | CTGGAG | 1 cut(s) | 720 |
| BpuMI | CCSGG | 1 cut(s) | 374 |
| BsaAI | YACGTR | 1 cut(s) | 236 |
| BsaBI | GATNNNNATC | 1 cut(s) | 204 |
| BsaI | GGTCTC | 2 cut(s) | 399, 423 |
| BsaJI | CCNNGG | 4 cut(s) | 261, 373, 409, 997 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 395 |
| Bse1I | ACTGG | 2 cut(s) | 670, 703 |
| Bse3DI | GCAATG | 1 cut(s) | 651 |
| Bse8I | GATNNNNATC | 1 cut(s) | 204 |
| BseBI | CCWGG | 1 cut(s) | 968 |
| BseDI | CCNNGG | 4 cut(s) | 261, 373, 409, 997 |
| BseGI | GGATG | 3 cut(s) | 78, 443, 479 |
| BseJI | GATNNNNATC | 1 cut(s) | 204 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BseMI | GCAATG | 1 cut(s) | 651 |
| BseMII | CTCAG | 2 cut(s) | 498, 504 |
| BseNI | ACTGG | 2 cut(s) | 670, 703 |
| BseRI | GAGGAG | 1 cut(s) | 496 |
| BseXI | GCAGC | 1 cut(s) | 637 |
| BsgI | GTGCAG | 1 cut(s) | 810 |
| Bsh1236I | CGCG | 1 cut(s) | 999 |
| BshFI | GGCC | 4 cut(s) | 260, 299, 384, 786 |
| BsiSI | CCGG | 1 cut(s) | 373 |
| BslFI | GGGAC | 2 cut(s) | 174, 861 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 3 cut(s) | 217, 399, 423 |
| BsmFI | GGGAC | 2 cut(s) | 174, 861 |
| BsmI | GAATGC | 1 cut(s) | 341 |
| BsnI | GGCC | 4 cut(s) | 260, 299, 384, 786 |
| Bso31I | GGTCTC | 2 cut(s) | 399, 423 |
| Bsp1407I | TGTACA | 1 cut(s) | 541 |
| Bsp143I | GATC | 4 cut(s) | 121, 205, 970, 987 |
| Bsp19I | CCATGG | 1 cut(s) | 409 |
| BspACI | CCGC | 4 cut(s) | 76, 982, 997, 999 |
| BspANI | GGCC | 4 cut(s) | 260, 299, 384, 786 |
| BspCNI | CTCAG | 2 cut(s) | 497, 505 |
| BspFNI | CGCG | 1 cut(s) | 999 |
| BspLI | GGNNCC | 4 cut(s) | 259, 505, 624, 703 |
| BspPI | GGATC | 2 cut(s) | 978, 982 |
| BspTI | CTTAAG | 1 cut(s) | 974 |
| BspTNI | GGTCTC | 2 cut(s) | 399, 423 |
| BsrDI | GCAATG | 1 cut(s) | 651 |
| BsrGI | TGTACA | 1 cut(s) | 541 |
| BsrI | ACTGG | 2 cut(s) | 670, 703 |
| BssECI | CCNNGG | 4 cut(s) | 261, 373, 409, 997 |
| BssMI | GATC | 4 cut(s) | 121, 205, 970, 987 |
| BssSI | CACGAG | 4 cut(s) | 24, 360, 456, 747 |
| BssT1I | CCWWGG | 2 cut(s) | 261, 409 |
| Bst2BI | CACGAG | 4 cut(s) | 24, 360, 456, 747 |
| Bst2UI | CCWGG | 1 cut(s) | 968 |
| Bst4CI | ACNGT | 2 cut(s) | 548, 635 |
| BstAFI | CTTAAG | 1 cut(s) | 974 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 347, 650 |
| BstAUI | TGTACA | 1 cut(s) | 541 |
| BstBAI | YACGTR | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 2 cut(s) | 10, 564 |
| BstDEI | CTNAG | 2 cut(s) | 484, 513 |
| BstDSI | CCRYGG | 2 cut(s) | 409, 997 |
| BstF5I | GGATG | 3 cut(s) | 78, 443, 479 |
| BstFNI | CGCG | 1 cut(s) | 999 |
| BstH2I | RGCGCY | 1 cut(s) | 765 |
| BstHHI | GCGC | 1 cut(s) | 764 |
| BstKTI | GATC | 4 cut(s) | 124, 208, 973, 990 |
| BstMAI | GTCTC | 3 cut(s) | 217, 399, 423 |
| BstMBI | GATC | 4 cut(s) | 121, 205, 970, 987 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 266, 347, 650 |
| BstNI | CCWGG | 1 cut(s) | 968 |
| BstSCI | CCNGG | 2 cut(s) | 372, 966 |
| BstUI | CGCG | 1 cut(s) | 999 |
| BstV1I | GCAGC | 1 cut(s) | 637 |
| BstX2I | RGATCY | 3 cut(s) | 121, 970, 987 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 37 |
| BstYI | RGATCY | 3 cut(s) | 121, 970, 987 |
| BsuRI | GGCC | 4 cut(s) | 260, 299, 384, 786 |
| BtgI | CCRYGG | 2 cut(s) | 409, 997 |
| BtrI | CACGTC | 1 cut(s) | 434 |
| BtsCI | GGATG | 3 cut(s) | 78, 443, 479 |
| BtsI | GCAGTG | 1 cut(s) | 336 |
| BtsIMutI | CAGTG | 5 cut(s) | 336, 492, 510, 544, 696 |
| Cac8I | GCNNGC | 2 cut(s) | 10, 564 |
| CfoI | GCGC | 1 cut(s) | 764 |
| Cfr13I | GGNCC | 1 cut(s) | 258 |
| Cfr42I | CCGCGG | 1 cut(s) | 1000 |
| Csp6I | GTAC | 2 cut(s) | 542, 1021 |
| CviAII | CATG | 6 cut(s) | 33, 410, 422, 684, 788, 795 |
| CviQI | GTAC | 2 cut(s) | 542, 1021 |
| DdeI | CTNAG | 2 cut(s) | 484, 513 |
| DpnI | GATC | 4 cut(s) | 123, 207, 972, 989 |
| DpnII | GATC | 4 cut(s) | 121, 205, 970, 987 |
| EaeI | YGGCCR | 2 cut(s) | 297, 784 |
| Eco130I | CCWWGG | 2 cut(s) | 261, 409 |
| Eco31I | GGTCTC | 2 cut(s) | 399, 423 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| Eco72I | CACGTG | 1 cut(s) | 236 |
| EcoO109I | RGGNCCY | 1 cut(s) | 258 |
| EcoRI | GAATTC | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 966 |
| EcoT14I | CCWWGG | 2 cut(s) | 261, 409 |
| ErhI | CCWWGG | 2 cut(s) | 261, 409 |
| FaeI | CATG | 6 cut(s) | 36, 413, 425, 687, 791, 798 |
| FaqI | GGGAC | 2 cut(s) | 174, 861 |
| FatI | CATG | 6 cut(s) | 32, 409, 421, 683, 787, 794 |
| FblI | GTMKAC | 1 cut(s) | 821 |
| Fnu4HI | GCNGC | 1 cut(s) | 651 |
| FokI | GGATG | 3 cut(s) | 65, 430, 466 |
| Fsp4HI | GCNGC | 1 cut(s) | 651 |
| FspBI | CTAG | 1 cut(s) | 471 |
| GlaI | GCGC | 1 cut(s) | 763 |
| GluI | GCNGC | 1 cut(s) | 651 |
| GsuI | CTGGAG | 1 cut(s) | 720 |
| HaeII | RGCGCY | 1 cut(s) | 765 |
| HaeIII | GGCC | 4 cut(s) | 260, 299, 384, 786 |
| HapII | CCGG | 1 cut(s) | 373 |
| HhaI | GCGC | 1 cut(s) | 764 |
| Hin1II | CATG | 6 cut(s) | 36, 413, 425, 687, 791, 798 |
| Hin6I | GCGC | 1 cut(s) | 762 |
| HinP1I | GCGC | 1 cut(s) | 762 |
| HinfI | GANTC | 2 cut(s) | 515, 791 |
| HpaII | CCGG | 1 cut(s) | 373 |
| HphI | GGTGA | 3 cut(s) | 107, 686, 709 |
| Hpy166II | GTNNAC | 4 cut(s) | 437, 542, 544, 822 |
| Hpy188I | TCNGA | 2 cut(s) | 136, 724 |
| Hpy188III | TCNNGA | 2 cut(s) | 354, 749 |
| Hpy8I | GTNNAC | 4 cut(s) | 437, 542, 544, 822 |
| Hpy99I | CGWCG | 1 cut(s) | 294 |
| HpyAV | CCTTC | 3 cut(s) | 92, 395, 612 |
| HpyCH4III | ACNGT | 2 cut(s) | 548, 635 |
| HpyCH4IV | ACGT | 5 cut(s) | 17, 235, 289, 433, 439 |
| HpyCH4V | TGCA | 7 cut(s) | 176, 233, 341, 490, 644, 653, 827 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 266, 347, 650 |
| HpyF3I | CTNAG | 2 cut(s) | 484, 513 |
| HpySE526I | ACGT | 5 cut(s) | 17, 235, 289, 433, 439 |
| Hsp92II | CATG | 6 cut(s) | 36, 413, 425, 687, 791, 798 |
| HspAI | GCGC | 1 cut(s) | 762 |
| KspI | CCGCGG | 1 cut(s) | 1000 |
| Kzo9I | GATC | 4 cut(s) | 121, 205, 970, 987 |
| LmnI | GCTCC | 2 cut(s) | 509, 701 |
| LpnPI | CCDG | 9 cut(s) | 168, 386, 552, 651, 657, 684, 953, 963, 980 |
| Lsp1109I | GCAGC | 1 cut(s) | 637 |
| LweI | GCATC | 5 cut(s) | 87, 220, 662, 715, 969 |
| MaeI | CTAG | 1 cut(s) | 471 |
| MaeII | ACGT | 5 cut(s) | 17, 235, 289, 433, 439 |
| MalI | GATC | 4 cut(s) | 123, 207, 972, 989 |
| MboI | GATC | 4 cut(s) | 121, 205, 970, 987 |
| MboII | GAAGA | 5 cut(s) | 54, 444, 459, 651, 997 |
| MflI | RGATCY | 3 cut(s) | 121, 970, 987 |
| MlsI | TGGCCA | 2 cut(s) | 299, 786 |
| MluCI | AATT | 6 cut(s) | 98, 154, 552, 780, 911, 928 |
| MluNI | TGGCCA | 2 cut(s) | 299, 786 |
| MlyI | GAGTC | 1 cut(s) | 524 |
| Mox20I | TGGCCA | 2 cut(s) | 299, 786 |
| MscI | TGGCCA | 2 cut(s) | 299, 786 |
| MseI | TTAA | 2 cut(s) | 591, 975 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 426 |
| Msp20I | TGGCCA | 2 cut(s) | 299, 786 |
| MspA1I | CMGCKG | 1 cut(s) | 999 |
| MspCI | CTTAAG | 1 cut(s) | 974 |
| MspI | CCGG | 1 cut(s) | 373 |
| MspR9I | CCNGG | 2 cut(s) | 374, 968 |
| Mva1269I | GAATGC | 1 cut(s) | 341 |
| MvaI | CCWGG | 1 cut(s) | 968 |
| MvnI | CGCG | 1 cut(s) | 999 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 266, 347, 650 |
| NciI | CCSGG | 1 cut(s) | 374 |
| NcoI | CCATGG | 1 cut(s) | 409 |
| NdeII | GATC | 4 cut(s) | 121, 205, 970, 987 |
| NlaIII | CATG | 6 cut(s) | 36, 413, 425, 687, 791, 798 |
| NlaIV | GGNNCC | 4 cut(s) | 259, 505, 624, 703 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 397 |
| PctI | GAATGC | 1 cut(s) | 341 |
| PfeI | GAWTC | 1 cut(s) | 791 |
| PflFI | GACNNNGTC | 1 cut(s) | 770 |
| PfoI | TCCNGGA | 1 cut(s) | 966 |
| PkrI | GCNGC | 1 cut(s) | 652 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PmaCI | CACGTG | 1 cut(s) | 236 |
| PmlI | CACGTG | 1 cut(s) | 236 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| Ppu21I | YACGTR | 1 cut(s) | 236 |
| Psp6I | CCWGG | 1 cut(s) | 966 |
| PspCI | CACGTG | 1 cut(s) | 236 |
| PspGI | CCWGG | 1 cut(s) | 966 |
| PspN4I | GGNNCC | 4 cut(s) | 259, 505, 624, 703 |
| PspPI | GGNCC | 1 cut(s) | 258 |
| PsuI | RGATCY | 3 cut(s) | 121, 970, 987 |
| PsyI | GACNNNGTC | 1 cut(s) | 770 |
| RsaI | GTAC | 2 cut(s) | 543, 1022 |
| RsaNI | GTAC | 2 cut(s) | 542, 1021 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 426 |
| SacII | CCGCGG | 1 cut(s) | 1000 |
| SaqAI | TTAA | 2 cut(s) | 591, 975 |
| SatI | GCNGC | 1 cut(s) | 651 |
| Sau3AI | GATC | 4 cut(s) | 121, 205, 970, 987 |
| Sau96I | GGNCC | 1 cut(s) | 258 |
| SchI | GAGTC | 1 cut(s) | 524 |
| ScrFI | CCNGG | 2 cut(s) | 374, 968 |
| SfaNI | GCATC | 5 cut(s) | 87, 220, 662, 715, 969 |
| Sfr303I | CCGCGG | 1 cut(s) | 1000 |
| SgrBI | CCGCGG | 1 cut(s) | 1000 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 426 |
| SmlI | CTYRAG | 1 cut(s) | 974 |
| SmoI | CTYRAG | 1 cut(s) | 974 |
| Sse9I | AATT | 6 cut(s) | 98, 154, 552, 780, 911, 928 |
| SsiI | CCGC | 4 cut(s) | 76, 982, 997, 999 |
| SspI | AATATT | 1 cut(s) | 529 |
| SspMI | CTAG | 1 cut(s) | 471 |
| StyD4I | CCNGG | 2 cut(s) | 372, 966 |
| StyI | CCWWGG | 2 cut(s) | 261, 409 |
| TaaI | ACNGT | 2 cut(s) | 548, 635 |
| TaiI | ACGT | 5 cut(s) | 20, 238, 292, 436, 442 |
| TaqI | TCGA | 2 cut(s) | 355, 391 |
| TasI | AATT | 6 cut(s) | 98, 154, 552, 780, 911, 928 |
| TatI | WGTACW | 1 cut(s) | 541 |
| TfiI | GAWTC | 1 cut(s) | 791 |
| Tru1I | TTAA | 2 cut(s) | 591, 975 |
| Tru9I | TTAA | 2 cut(s) | 591, 975 |
| TscAI | CASTG | 5 cut(s) | 343, 492, 517, 551, 703 |
| TseI | GCWGC | 1 cut(s) | 650 |
| TspDTI | ATGAA | 6 cut(s) | 239, 432, 614, 783, 800, 860 |
| TspRI | CASTG | 5 cut(s) | 343, 492, 517, 551, 703 |
| Tth111I | GACNNNGTC | 1 cut(s) | 770 |
| Vha464I | CTTAAG | 1 cut(s) | 974 |
| XapI | RAATTY | 3 cut(s) | 98, 154, 552 |
| XmiI | GTMKAC | 1 cut(s) | 821 |
| XspI | CTAG | 1 cut(s) | 471 |