transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 28 - 199 | 5.5e-22 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1502 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1457, 1499 |
| AccI | GTMKAC | 1 cut(s) | 382 |
| AclWI | GGATC | 2 cut(s) | 400, 447 |
| AcoI | YGGCCR | 2 cut(s) | 100, 1490 |
| AcsI | RAATTY | 4 cut(s) | 116, 422, 1577, 1754 |
| AcuI | CTGAAG | 2 cut(s) | 1068, 1745 |
| AfaI | GTAC | 4 cut(s) | 28, 489, 910, 1354 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 695, 1457, 1499, 1646 |
| AgsI | TTSAA | 6 cut(s) | 192, 364, 421, 608, 970, 1065 |
| AjnI | CCWGG | 2 cut(s) | 1450, 1543 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1022, 1054 |
| AluBI | AGCT | 9 cut(s) | 225, 449, 635, 665, 987, 1056, 1100, 1163, 1673 |
| AluI | AGCT | 9 cut(s) | 225, 449, 635, 665, 987, 1056, 1100, 1163, 1673 |
| Alw21I | GWGCWC | 1 cut(s) | 11 |
| Alw26I | GTCTC | 2 cut(s) | 351, 1239 |
| AlwI | GGATC | 2 cut(s) | 400, 447 |
| AoxI | GGCC | 2 cut(s) | 100, 1490 |
| ApeKI | GCWGC | 6 cut(s) | 285, 449, 644, 1219, 1742, 1784 |
| ApoI | RAATTY | 4 cut(s) | 116, 422, 1577, 1754 |
| AspS9I | GGNCC | 1 cut(s) | 1374 |
| AsuC2I | CCSGG | 1 cut(s) | 1075 |
| AsuHPI | GGTGA | 2 cut(s) | 936, 1698 |
| AvaII | GGWCC | 1 cut(s) | 1374 |
| BaeGI | GKGCMC | 1 cut(s) | 1551 |
| BalI | TGGCCA | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 1502 |
| BanII | GRGCYC | 1 cut(s) | 809 |
| BbsI | GAAGAC | 1 cut(s) | 1733 |
| Bbv12I | GWGCWC | 1 cut(s) | 11 |
| BbvI | GCAGC | 6 cut(s) | 272, 436, 631, 1206, 1754, 1771 |
| BccI | CCATC | 6 cut(s) | 151, 161, 727, 1078, 1301, 1316 |
| BciT130I | CCWGG | 2 cut(s) | 1452, 1545 |
| BcnI | CCSGG | 1 cut(s) | 1075 |
| BcoDI | GTCTC | 2 cut(s) | 351, 1239 |
| BfaI | CTAG | 3 cut(s) | 510, 528, 1792 |
| BfmI | CTRYAG | 4 cut(s) | 402, 450, 1254, 1712 |
| BglII | AGATCT | 1 cut(s) | 575 |
| BisI | GCNGC | 6 cut(s) | 286, 450, 645, 1220, 1743, 1785 |
| BlsI | GCNGC | 6 cut(s) | 287, 451, 646, 1221, 1744, 1786 |
| BmcAI | AGTACT | 2 cut(s) | 489, 910 |
| Bme1390I | CCNGG | 3 cut(s) | 1075, 1452, 1545 |
| Bme18I | GGWCC | 1 cut(s) | 1374 |
| BmgT120I | GGNCC | 1 cut(s) | 1374 |
| BmiI | GGNNCC | 2 cut(s) | 787, 1504 |
| BmrFI | CCNGG | 3 cut(s) | 1075, 1452, 1545 |
| BmsI | GCATC | 7 cut(s) | 253, 635, 705, 738, 847, 1206, 1268 |
| BpiI | GAAGAC | 1 cut(s) | 1733 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1471, 1503 |
| Bpu10I | CCTNAGC | 1 cut(s) | 631 |
| BpuEI | CTTGAG | 1 cut(s) | 302 |
| BpuMI | CCSGG | 1 cut(s) | 1075 |
| BsaBI | GATNNNNATC | 1 cut(s) | 132 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 1544 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 695, 1457, 1499, 1646 |
| Bse1I | ACTGG | 2 cut(s) | 916, 1760 |
| Bse3DI | GCAATG | 2 cut(s) | 303, 663 |
| Bse8I | GATNNNNATC | 1 cut(s) | 132 |
| BseBI | CCWGG | 2 cut(s) | 1452, 1545 |
| BseDI | CCNNGG | 2 cut(s) | 103, 1544 |
| BseGI | GGATG | 4 cut(s) | 626, 705, 753, 1070 |
| BseJI | GATNNNNATC | 1 cut(s) | 132 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 695, 1457, 1499, 1646 |
| BseMI | GCAATG | 2 cut(s) | 303, 663 |
| BseMII | CTCAG | 4 cut(s) | 333, 806, 1250, 1332 |
| BseNI | ACTGG | 2 cut(s) | 916, 1760 |
| BseSI | GKGCMC | 1 cut(s) | 1551 |
| BseXI | GCAGC | 6 cut(s) | 272, 436, 631, 1206, 1754, 1771 |
| BshFI | GGCC | 2 cut(s) | 102, 1492 |
| BshNI | GGYRCC | 1 cut(s) | 1502 |
| BsiHKAI | GWGCWC | 1 cut(s) | 11 |
| BsiSI | CCGG | 1 cut(s) | 1075 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 695, 1457, 1499, 1646 |
| BsmAI | GTCTC | 2 cut(s) | 351, 1239 |
| BsmI | GAATGC | 2 cut(s) | 1213, 1249 |
| BsnI | GGCC | 2 cut(s) | 102, 1492 |
| Bsp1286I | GDGCHC | 3 cut(s) | 11, 809, 1551 |
| Bsp143I | GATC | 3 cut(s) | 392, 439, 575 |
| Bsp19I | CCATGG | 1 cut(s) | 103 |
| BspANI | GGCC | 2 cut(s) | 102, 1492 |
| BspCNI | CTCAG | 4 cut(s) | 334, 805, 1249, 1331 |
| BspLI | GGNNCC | 2 cut(s) | 787, 1504 |
| BspMAI | CTGCAG | 2 cut(s) | 454, 1716 |
| BspPI | GGATC | 2 cut(s) | 400, 447 |
| BspT107I | GGYRCC | 1 cut(s) | 1502 |
| BsrDI | GCAATG | 2 cut(s) | 303, 663 |
| BsrI | ACTGG | 2 cut(s) | 916, 1760 |
| BssECI | CCNNGG | 2 cut(s) | 103, 1544 |
| BssMI | GATC | 3 cut(s) | 392, 439, 575 |
| BssNAI | GTATAC | 1 cut(s) | 383 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst1107I | GTATAC | 1 cut(s) | 383 |
| Bst2UI | CCWGG | 2 cut(s) | 1452, 1545 |
| Bst4CI | ACNGT | 3 cut(s) | 31, 1255, 1558 |
| Bst6I | CTCTTC | 1 cut(s) | 772 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 653, 1616 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 654 |
| BstDEI | CTNAG | 5 cut(s) | 342, 631, 792, 1236, 1318 |
| BstDSI | CCRYGG | 1 cut(s) | 103 |
| BstF5I | GGATG | 4 cut(s) | 626, 705, 753, 1070 |
| BstKTI | GATC | 3 cut(s) | 395, 442, 578 |
| BstMAI | GTCTC | 2 cut(s) | 351, 1239 |
| BstMBI | GATC | 3 cut(s) | 392, 439, 575 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 632, 641, 653, 662, 857, 1225, 1616 |
| BstNI | CCWGG | 2 cut(s) | 1452, 1545 |
| BstNSI | RCATGY | 2 cut(s) | 27, 679 |
| BstSCI | CCNGG | 3 cut(s) | 1073, 1450, 1543 |
| BstSFI | CTRYAG | 4 cut(s) | 402, 450, 1254, 1712 |
| BstSLI | GKGCMC | 1 cut(s) | 1551 |
| BstV1I | GCAGC | 6 cut(s) | 272, 436, 631, 1206, 1754, 1771 |
| BstV2I | GAAGAC | 1 cut(s) | 1733 |
| BstX2I | RGATCY | 2 cut(s) | 392, 575 |
| BstYI | RGATCY | 2 cut(s) | 392, 575 |
| BstZ17I | GTATAC | 1 cut(s) | 383 |
| BsuRI | GGCC | 2 cut(s) | 102, 1492 |
| BtgI | CCRYGG | 1 cut(s) | 103 |
| BtsCI | GGATG | 4 cut(s) | 626, 705, 753, 1070 |
| BtsI | GCAGTG | 2 cut(s) | 1218, 1709 |
| BtsIMutI | CAGTG | 2 cut(s) | 1218, 1709 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 654 |
| Cfr13I | GGNCC | 1 cut(s) | 1374 |
| CseI | GACGC | 1 cut(s) | 1119 |
| CsiI | ACCWGGT | 1 cut(s) | 1450 |
| Csp6I | GTAC | 4 cut(s) | 27, 488, 909, 1353 |
| CviQI | GTAC | 4 cut(s) | 27, 488, 909, 1353 |
| DdeI | CTNAG | 5 cut(s) | 342, 631, 792, 1236, 1318 |
| DpnI | GATC | 3 cut(s) | 394, 441, 577 |
| DpnII | GATC | 3 cut(s) | 392, 439, 575 |
| EaeI | YGGCCR | 2 cut(s) | 100, 1490 |
| Eam1104I | CTCTTC | 1 cut(s) | 772 |
| EarI | CTCTTC | 1 cut(s) | 772 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 1 cut(s) | 809 |
| Eco47I | GGWCC | 1 cut(s) | 1374 |
| Eco57I | CTGAAG | 2 cut(s) | 1068, 1745 |
| EcoRII | CCWGG | 2 cut(s) | 1450, 1543 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| EcoT22I | ATGCAT | 2 cut(s) | 199, 840 |
| EcoT38I | GRGCYC | 1 cut(s) | 809 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1599, 1631 |
| FauNDI | CATATG | 3 cut(s) | 199, 1141, 1683 |
| FblI | GTMKAC | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 6 cut(s) | 286, 450, 645, 1220, 1743, 1785 |
| FokI | GGATG | 4 cut(s) | 613, 712, 760, 1057 |
| FriOI | GRGCYC | 1 cut(s) | 809 |
| Fsp4HI | GCNGC | 6 cut(s) | 286, 450, 645, 1220, 1743, 1785 |
| FspBI | CTAG | 3 cut(s) | 510, 528, 1792 |
| GluI | GCNGC | 6 cut(s) | 286, 450, 645, 1220, 1743, 1785 |
| HaeIII | GGCC | 2 cut(s) | 102, 1492 |
| HapII | CCGG | 1 cut(s) | 1075 |
| HgaI | GACGC | 1 cut(s) | 1119 |
| HincII | GTYRAC | 1 cut(s) | 737 |
| HindII | GTYRAC | 1 cut(s) | 737 |
| HinfI | GANTC | 6 cut(s) | 45, 128, 344, 398, 493, 1642 |
| HpaII | CCGG | 1 cut(s) | 1075 |
| HphI | GGTGA | 2 cut(s) | 936, 1698 |
| Hpy166II | GTNNAC | 6 cut(s) | 110, 173, 383, 506, 737, 817 |
| Hpy188I | TCNGA | 9 cut(s) | 343, 397, 795, 1239, 1306, 1321, 1479, 1530, 1725 |
| Hpy188III | TCNNGA | 3 cut(s) | 260, 319, 476 |
| Hpy8I | GTNNAC | 6 cut(s) | 110, 173, 383, 506, 737, 817 |
| HpyAV | CCTTC | 1 cut(s) | 1043 |
| HpyCH4III | ACNGT | 3 cut(s) | 31, 1255, 1558 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 632, 641, 653, 662, 857, 1225, 1616 |
| HpyF3I | CTNAG | 5 cut(s) | 342, 631, 792, 1236, 1318 |
| Kzo9I | GATC | 3 cut(s) | 392, 439, 575 |
| LmnI | GCTCC | 4 cut(s) | 640, 785, 984, 1670 |
| Lsp1109I | GCAGC | 6 cut(s) | 272, 436, 631, 1206, 1754, 1771 |
| LweI | GCATC | 7 cut(s) | 253, 635, 705, 738, 847, 1206, 1268 |
| MabI | ACCWGGT | 1 cut(s) | 1450 |
| MaeI | CTAG | 3 cut(s) | 510, 528, 1792 |
| MaeIII | GTNAC | 2 cut(s) | 880, 937 |
| MalI | GATC | 3 cut(s) | 394, 441, 577 |
| MboI | GATC | 3 cut(s) | 392, 439, 575 |
| MboII | GAAGA | 5 cut(s) | 86, 578, 759, 1252, 1738 |
| MfeI | CAATTG | 2 cut(s) | 359, 1229 |
| MflI | RGATCY | 2 cut(s) | 392, 575 |
| MhlI | GDGCHC | 3 cut(s) | 11, 809, 1551 |
| MlsI | TGGCCA | 1 cut(s) | 102 |
| MluNI | TGGCCA | 1 cut(s) | 102 |
| MlyI | GAGTC | 3 cut(s) | 39, 353, 1636 |
| MmeI | TCCRAC | 1 cut(s) | 1716 |
| MnlI | CCTC | 5 cut(s) | 295, 536, 1516, 1522, 1699 |
| Mox20I | TGGCCA | 1 cut(s) | 102 |
| Mph1103I | ATGCAT | 2 cut(s) | 199, 840 |
| MscI | TGGCCA | 1 cut(s) | 102 |
| MseI | TTAA | 3 cut(s) | 426, 1583, 1752 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1468, 1737 |
| Msp20I | TGGCCA | 1 cut(s) | 102 |
| MspA1I | CMGCKG | 1 cut(s) | 1100 |
| MspI | CCGG | 1 cut(s) | 1075 |
| MspR9I | CCNGG | 3 cut(s) | 1075, 1452, 1545 |
| MunI | CAATTG | 2 cut(s) | 359, 1229 |
| Mva1269I | GAATGC | 2 cut(s) | 1213, 1249 |
| MvaI | CCWGG | 2 cut(s) | 1452, 1545 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 632, 641, 653, 662, 857, 1225, 1616 |
| NciI | CCSGG | 1 cut(s) | 1075 |
| NcoI | CCATGG | 1 cut(s) | 103 |
| NdeI | CATATG | 3 cut(s) | 199, 1141, 1683 |
| NdeII | GATC | 3 cut(s) | 392, 439, 575 |
| NlaIV | GGNNCC | 2 cut(s) | 787, 1504 |
| NmeAIII | GCCGAG | 1 cut(s) | 1468 |
| NmuCI | GTSAC | 1 cut(s) | 880 |
| NsiI | ATGCAT | 2 cut(s) | 199, 840 |
| NspI | RCATGY | 2 cut(s) | 27, 679 |
| PctI | GAATGC | 2 cut(s) | 1213, 1249 |
| PfeI | GAWTC | 3 cut(s) | 128, 398, 493 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1457, 1499 |
| PkrI | GCNGC | 6 cut(s) | 287, 451, 646, 1221, 1744, 1786 |
| PleI | GAGTC | 3 cut(s) | 39, 352, 1636 |
| PpsI | GAGTC | 3 cut(s) | 39, 352, 1636 |
| Psp6I | CCWGG | 2 cut(s) | 1450, 1543 |
| PspGI | CCWGG | 2 cut(s) | 1450, 1543 |
| PspN4I | GGNNCC | 2 cut(s) | 787, 1504 |
| PspPI | GGNCC | 1 cut(s) | 1374 |
| PstI | CTGCAG | 2 cut(s) | 454, 1716 |
| PsuI | RGATCY | 2 cut(s) | 392, 575 |
| PvuII | CAGCTG | 1 cut(s) | 1100 |
| RsaI | GTAC | 4 cut(s) | 28, 489, 910, 1354 |
| RsaNI | GTAC | 4 cut(s) | 27, 488, 909, 1353 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1468, 1737 |
| SaqAI | TTAA | 3 cut(s) | 426, 1583, 1752 |
| SatI | GCNGC | 6 cut(s) | 286, 450, 645, 1220, 1743, 1785 |
| Sau3AI | GATC | 3 cut(s) | 392, 439, 575 |
| Sau96I | GGNCC | 1 cut(s) | 1374 |
| ScaI | AGTACT | 2 cut(s) | 489, 910 |
| SchI | GAGTC | 3 cut(s) | 39, 353, 1636 |
| ScrFI | CCNGG | 3 cut(s) | 1075, 1452, 1545 |
| SduI | GDGCHC | 3 cut(s) | 11, 809, 1551 |
| SexAI | ACCWGGT | 1 cut(s) | 1450 |
| SfaNI | GCATC | 7 cut(s) | 253, 635, 705, 738, 847, 1206, 1268 |
| SfcI | CTRYAG | 4 cut(s) | 402, 450, 1254, 1712 |
| SinI | GGWCC | 1 cut(s) | 1374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1468, 1737 |
| SmlI | CTYRAG | 1 cut(s) | 317 |
| SmoI | CTYRAG | 1 cut(s) | 317 |
| SspMI | CTAG | 3 cut(s) | 510, 528, 1792 |
| StyD4I | CCNGG | 3 cut(s) | 1073, 1450, 1543 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 3 cut(s) | 31, 1255, 1558 |
| TaqI | TCGA | 3 cut(s) | 43, 48, 123 |
| TatI | WGTACW | 3 cut(s) | 26, 487, 908 |
| TfiI | GAWTC | 3 cut(s) | 128, 398, 493 |
| Tru1I | TTAA | 3 cut(s) | 426, 1583, 1752 |
| Tru9I | TTAA | 3 cut(s) | 426, 1583, 1752 |
| TscAI | CASTG | 2 cut(s) | 1218, 1716 |
| TseFI | GTSAC | 1 cut(s) | 880 |
| TseI | GCWGC | 6 cut(s) | 285, 449, 644, 1219, 1742, 1784 |
| Tsp45I | GTSAC | 1 cut(s) | 880 |
| TspGWI | ACGGA | 1 cut(s) | 28 |
| TspRI | CASTG | 2 cut(s) | 1218, 1716 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1457, 1499 |
| VpaK11BI | GGWCC | 1 cut(s) | 1374 |
| XapI | RAATTY | 4 cut(s) | 116, 422, 1577, 1754 |
| XceI | RCATGY | 2 cut(s) | 27, 679 |
| XmiI | GTMKAC | 1 cut(s) | 382 |
| XspI | CTAG | 3 cut(s) | 510, 528, 1792 |
| ZrmI | AGTACT | 2 cut(s) | 489, 910 |
| Zsp2I | ATGCAT | 2 cut(s) | 199, 840 |