Rh7AG209900

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005827
Physical Location & Seq
Forward (+)
19238791 .. 19246758
7968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG209900.1

Sequence Viewer

Length: 582 bp
ATGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCTGCACCGCCACCACCTGCCTCGAGCTCGCCTCCTCCACCCTCCATGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCACCCTTTACGTCCCCGGAACTCTCCAGGACCCCGACCAGGTCCTCGTAGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Protein Analysis

193

Amino Acids

21.32

Weight (kDa)

5.76

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 71 - 186 6.9e-28 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
AatII GACGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 398
AccI GTMKAC 1 cut(s) 390
AciI CCGC 3 cut(s) 252, 339, 451
AcuI CTGAAG 2 cut(s) 149, 575
AcyI GRCGYC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 2 cut(s) 119, 184
AjnI CCWGG 3 cut(s) 225, 366, 378
AluBI AGCT 4 cut(s) 58, 166, 271, 530
AluI AGCT 4 cut(s) 58, 166, 271, 530
Alw21I GWGCWC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 370, 382
AsuC2I CCSGG 1 cut(s) 357
AsuII TTCGAA 1 cut(s) 480
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 370, 382
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 3 cut(s) 127, 151, 556
BciT130I CCWGG 3 cut(s) 227, 368, 380
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 269
BlpI GCTNAGC 1 cut(s) 167
Bme1390I CCNGG 4 cut(s) 227, 357, 368, 380
Bme18I GGWCC 2 cut(s) 370, 382
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 370, 382
BmiI GGNNCC 4 cut(s) 90, 372, 400, 567
BmrFI CCNGG 4 cut(s) 227, 357, 368, 380
BmsI GCATC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 3 cut(s) 209, 230, 350
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 414, 452
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 2 cut(s) 311, 401
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 3 cut(s) 227, 368, 380
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 3 cut(s) 165, 268, 455
BseYI CCCAGC 1 cut(s) 530
BsgI GTGCAG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 3 cut(s) 312, 357, 402
BslFI GGGAC 2 cut(s) 314, 338
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 314, 338
BsoBI CYCGRG 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 121, 205, 456
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 3 cut(s) 252, 339, 451
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 90, 372, 400, 567
BspMI ACCTGC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 398
BsrFI RCCGGY 2 cut(s) 311, 401
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 2 cut(s) 311, 401
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 121, 205, 456
BssNI GRCGYC 1 cut(s) 393
Bst2UI CCWGG 3 cut(s) 227, 368, 380
Bst4CI ACNGT 2 cut(s) 77, 579
BstACI GRCGYC 1 cut(s) 393
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 56, 273, 546
BstDEI CTNAG 2 cut(s) 167, 504
BstKTI GATC 3 cut(s) 124, 208, 459
BstMBI GATC 3 cut(s) 121, 205, 456
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 3 cut(s) 227, 368, 380
BstNSI RCATGY 2 cut(s) 116, 427
BstSCI CCNGG 4 cut(s) 225, 355, 366, 378
BstSFI CTRYAG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 82, 195
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 3 cut(s) 56, 273, 546
Cfr10I RCCGGY 2 cut(s) 311, 401
Cfr13I GGNCC 2 cut(s) 370, 382
CsiI ACCWGGT 1 cut(s) 378
CviAII CATG 3 cut(s) 113, 290, 424
CviJI RGCY 7 cut(s) 58, 166, 271, 405, 434, 530, 566
CviKI_1 RGCY 7 cut(s) 58, 166, 271, 405, 434, 530, 566
DdeI CTNAG 2 cut(s) 167, 504
DpnI GATC 3 cut(s) 123, 207, 458
DpnII GATC 3 cut(s) 121, 205, 456
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 370, 382
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 149, 575
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 2 cut(s) 370, 382
EcoRII CCWGG 3 cut(s) 225, 366, 378
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 3 cut(s) 116, 293, 427
FaiI YATR 5 cut(s) 108, 114, 291, 425, 518
FaqI GGGAC 2 cut(s) 314, 338
FatI CATG 3 cut(s) 112, 289, 423
FblI GTMKAC 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 273
FspBI CTAG 1 cut(s) 59
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 3 cut(s) 209, 230, 350
HapII CCGG 3 cut(s) 312, 357, 402
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 3 cut(s) 116, 293, 427
HinfI GANTC 2 cut(s) 44, 230
HpaII CCGG 3 cut(s) 312, 357, 402
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 67, 305, 523
Hpy188III TCNNGA 2 cut(s) 209, 415
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 77, 579
HpyCH4IV ACGT 2 cut(s) 351, 393
HpyCH4V TGCA 4 cut(s) 80, 112, 249, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 2 cut(s) 167, 504
HpySE526I ACGT 2 cut(s) 351, 393
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 3 cut(s) 116, 293, 427
Kzo9I GATC 3 cut(s) 121, 205, 456
LmnI GCTCC 2 cut(s) 175, 571
LweI GCATC 1 cut(s) 312
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 351, 393
MalI GATC 3 cut(s) 123, 207, 458
MboI GATC 3 cut(s) 121, 205, 456
MboII GAAGA 5 cut(s) 131, 142, 212, 430, 520
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 83, 475
MlyI GAGTC 2 cut(s) 38, 224
MmeI TCCRAC 1 cut(s) 328
MseI TTAA 1 cut(s) 71
MspI CCGG 3 cut(s) 312, 357, 402
MspR9I CCNGG 4 cut(s) 227, 357, 368, 380
MvaI CCWGG 3 cut(s) 227, 368, 380
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 357
NdeII GATC 3 cut(s) 121, 205, 456
NlaIII CATG 3 cut(s) 116, 293, 427
NlaIV GGNNCC 4 cut(s) 90, 372, 400, 567
NspI RCATGY 2 cut(s) 116, 427
NspV TTCGAA 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PflFI GACNNNGTC 1 cut(s) 380
PfoI TCCNGGA 2 cut(s) 225, 366
PleI GAGTC 2 cut(s) 38, 224
PpsI GAGTC 2 cut(s) 38, 224
PpuMI RGGWCCY 2 cut(s) 370, 382
Psp124BI GAGCTC 1 cut(s) 273
Psp5II RGGWCCY 2 cut(s) 370, 382
Psp6I CCWGG 3 cut(s) 225, 366, 378
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 3 cut(s) 225, 366, 378
PspN4I GGNNCC 4 cut(s) 90, 372, 400, 567
PspPI GGNCC 2 cut(s) 370, 382
PspPPI RGGWCCY 2 cut(s) 370, 382
PspXI VCTCGAGB 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 380
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 3 cut(s) 121, 205, 456
Sau96I GGNCC 2 cut(s) 370, 382
SchI GAGTC 2 cut(s) 38, 224
ScrFI CCNGG 4 cut(s) 227, 357, 368, 380
SduI GDGCHC 1 cut(s) 273
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 570
Sfr274I CTCGAG 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 480
SinI GGWCC 2 cut(s) 370, 382
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 266, 429, 467
SmoI CTYRAG 3 cut(s) 266, 429, 467
Sse9I AATT 2 cut(s) 83, 475
SsiI CCGC 3 cut(s) 252, 339, 451
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 4 cut(s) 225, 355, 366, 378
TaaI ACNGT 2 cut(s) 77, 579
TaiI ACGT 2 cut(s) 354, 396
TaqI TCGA 4 cut(s) 124, 267, 414, 480
TasI AATT 2 cut(s) 83, 475
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 82, 195
TspDTI ATGAA 2 cut(s) 400, 540
TspRI CASTG 2 cut(s) 82, 195
Tth111I GACNNNGTC 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 370, 382
XceI RCATGY 2 cut(s) 116, 427
XhoI CTCGAG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 59
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.