Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Reverse (-)

40682572 .. 40685475

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1271200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

ATGTGGACCCGAGACAAGAACTTTGGCACAAGAGGCTTCTCGACGCCGCCTGCGACATGGAAGACGGCGCCGCCAACTCCTCCGGTGGTGCCGATGTCAGAGAGGAAGAGAGTGTCGCCTTCTGACAGAGAGGATCATTTTCACATTGTGCATAAAGTGCCTGCCGGCGAGTCTCCCTACGTCAGAGCCAAACAGGTGCAGTTGATAGAAAAGGATCCAGGCAAAGCCATATCCCTCTTCTGGGCTGCTATAAATGCTGGGGATCGAGTTGATAGTGCCTTGAAAGACATGGCAATTGTGATGAAACAATTGGATCGAGCGGAGGAGGCTATTGAAGCTATCAAGTCTTTTCGTCATCTCTGCCCGCATGATTCTCAGGAATCTCTTAACAATGTTTTAGTTGAACTGTACAAGCGGTCGGGAAGGATTGAAGAAGAGATTGAAATGCTTCAGTCCAAATTGAAACACATTGACGAAGGTGTAGCTTTTTGTGGAAGGAGGACAAAGACTGCAAGATCTCAGGGGAGGAAGGTTCAAATTACTGTTGAACAAGAGAGAGCAAGAATACTAGGAAACTTGGCCTGGGCTTACTTGCTGAAAGGTGATTACAAAACTGCCGAAGAATACTACTTGAAAGCTCTGTCATTGGAGCCGGATAAGAACAAGCAATGCAATTTAGCAATCTGCTTGATGCATATGAACAGATTTACAGAAGCAAAATCTCTGCTGCAAGTTGTAAGAGATTCATCTGGAAATAAACCAATGGATGAATCTTATGCCAAGTCTTTTGAGCGTGCTTATCAAATGCTGACCGAACTAAAGGCACAATCAGTTTTAAGACCAGTTGAACAGGATGGAAGATCTCACATGTTCTCCAGAAGGCAGGCAGATGGTCGCGAAGAGGAGACTGTATCTGTTGATCAATGGAAGAAAGATCGTTATTTGAAAAACCCGTGTGAGAGCAGGTCTAGTTTTTCCAGCATAATGAAGGAAAATCTGGGTGGTATACCGGGAGCAGAAACAACTCCAAATGTGAAGACATTGTTTTCTCCAGCTCCTGCTATATGGGATCCAGAAATTCAATTTTCTCAACCAAGAAGATCTCCGTGGGGACTTAATGGTGGACACCCCAGGAGGGAAATATGGGGATGTAATGTTGGAAGTTCAAATGAAGAACTCTCATTTGACCGATGTCCAAGAACAGAAAATGTGCGAGCTCCTGCTGCTCGAAGTCTCAATGAAGGTTTGCTAGCTTCAACTGTTGGAAAGTCAGAAGTCGCACTTCACAACTCGGTCTCTAGTTTGTCTTCACCAATTAGCAGAGATTTGAGGAGGCCCCAAGGAGATGCAGCAGTACGATCCATTCTGCAACCTATAGCAAGTGGAAATTGGAAGCATACCTCTCGGATGAATGATGACTGTTTCCAACTGAAAGACAAAGCCACGGTGGTCAGTTCTTCAATGTACAGTTGTGGTAAGAAAAGTTGGGCAGATATGGTCGAAGAAGAAGAACAACAGTTGCTTAGCTCTGAATACTTTGAAAACAACGAAAACCTGAATAGTAACATACCCCCTGAAAGTCCTTGTCTGCAAACTCAAGTGAAAAGTCTGGGCTCCAAGCTTGAATCAGTTGATCTCAAAGACAAAAATGTTATATCCGGAAATGCTGGCTCACCAAGGAACTCTGCAGTGCGCCGTTCTTTGCGCTTTGATCAGCAGCAGGAGCGAGAATCAGTGGATTACATCAGTTCATCATCCCCAGTTCCGAAGGTGGGCAGAAGAAAAAGGTTGCAGAGTTTCCAGGATATAACTGAATGTCAAGATAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

611

Amino Acids

68.73

Weight (kDa)

8.77

Isoelectric Point (pI)

70.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_2	PF07719	187 - 219	2.1e-06	Tetratricopeptide repeat
TPR_1	PF00515	187 - 219	6.3e-08	Tetratricopeptide repeat
TPR_8	PF13181	187 - 219	6e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	954
AccB1I	GGYRCC	2 cut(s)	67, 88
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	1006
AccII	CGCG	1 cut(s)	897
AccIII	TCCGGA	1 cut(s)	1658
AciI	CCGC	5 cut(s)	47, 71, 320, 365, 415
AclWI	GGATC	8 cut(s)	141, 209, 222, 270, 321, 1064, 1077, 1353
AcsI	RAATTY	1 cut(s)	1077
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	2 cut(s)	44, 68
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	3 cut(s)	410, 1356, 1466
AfiI	CCNNNNNNNGG	4 cut(s)	240, 241, 1135, 1772
AflIII	ACRYGT	1 cut(s)	867
AjnI	CCWGG	4 cut(s)	217, 581, 1130, 1800
AluBI	AGCT	8 cut(s)	338, 485, 638, 1055, 1217, 1253, 1527, 1621
AluI	AGCT	8 cut(s)	338, 485, 638, 1055, 1217, 1253, 1527, 1621
Alw21I	GWGCWC	1 cut(s)	1219
Alw26I	GTCTC	5 cut(s)	6, 177, 899, 1238, 1300
AlwI	GGATC	8 cut(s)	141, 209, 222, 270, 321, 1064, 1077, 1353
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	1658
AoxI	GGCC	2 cut(s)	579, 1334
ApeKI	GCWGC	5 cut(s)	245, 727, 1223, 1349, 1717
ApoI	RAATTY	1 cut(s)	1077
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	3 cut(s)	70, 1695, 1707
AspS9I	GGNCC	2 cut(s)	6, 1335
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	3 cut(s)	614, 1302, 1665
AsuNHI	GCTAGC	1 cut(s)	1249
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	6
BamHI	GGATCC	2 cut(s)	214, 1069
BanI	GGYRCC	2 cut(s)	67, 88
BanII	GRGCYC	2 cut(s)	1219, 1616
BbsI	GAAGAC	3 cut(s)	68, 1043, 1299
Bbv12I	GWGCWC	1 cut(s)	1219
BbvI	GCAGC	5 cut(s)	232, 714, 1210, 1361, 1729
BccI	CCATC	2 cut(s)	848, 884
BceAI	ACGGC	2 cut(s)	81, 1680
BcgI	CGANNNNNNTGC	2 cut(s)	1385, 1419
BciT130I	CCWGG	4 cut(s)	219, 583, 1132, 1802
BclI	TGATCA	2 cut(s)	919, 1711
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	5 cut(s)	6, 177, 899, 1238, 1300
BfaI	CTAG	4 cut(s)	569, 969, 1250, 1299
BfmI	CTRYAG	2 cut(s)	1374, 1686
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	954
BglII	AGATCT	3 cut(s)	515, 860, 1100
BisI	GCNGC	7 cut(s)	47, 71, 246, 728, 1224, 1350, 1718
BlpI	GCTNAGC	1 cut(s)	1523
BlsI	GCNGC	7 cut(s)	48, 72, 247, 729, 1225, 1351, 1719
Bme1390I	CCNGG	5 cut(s)	219, 583, 1011, 1132, 1802
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	6, 1335
BmiI	GGNNCC	8 cut(s)	8, 69, 90, 216, 651, 1071, 1337, 1615
BmrFI	CCNGG	5 cut(s)	219, 583, 1011, 1132, 1802
BmrI	ACTGGG	1 cut(s)	1754
BmsI	GCATC	2 cut(s)	681, 1336
BmtI	GCTAGC	1 cut(s)	1253
BmuI	ACTGGG	1 cut(s)	1754
BoxI	GACNNNNGTC	1 cut(s)	1191
BpiI	GAAGAC	3 cut(s)	68, 1043, 1299
BpmI	CTGGAG	2 cut(s)	859, 1035
Bpu1102I	GCTNAGC	1 cut(s)	1523
BpuEI	CTTGAG	1 cut(s)	1581
BpuMI	CCSGG	1 cut(s)	1011
BsaHI	GRCGYC	2 cut(s)	44, 68
BsaI	GGTCTC	1 cut(s)	1300
BsaJI	CCNNGG	6 cut(s)	582, 1106, 1130, 1339, 1443, 1676
BsaWI	WCCGGW	2 cut(s)	82, 1658
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 241, 1135, 1772
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	842, 1760
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	1658
BseBI	CCWGG	4 cut(s)	219, 583, 1132, 1802
BseDI	CCNNGG	6 cut(s)	582, 1106, 1130, 1339, 1443, 1676
BseGI	GGATG	5 cut(s)	772, 859, 1154, 1413, 1754
BseLI	CCNNNNNNNGG	4 cut(s)	240, 241, 1135, 1772
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	2 cut(s)	389, 533
BseNI	ACTGG	2 cut(s)	842, 1760
BseRI	GAGGAG	4 cut(s)	69, 338, 917, 1345
BseXI	GCAGC	5 cut(s)	232, 714, 1210, 1361, 1729
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	897
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	581, 1336
BshNI	GGYRCC	2 cut(s)	67, 88
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	1219
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	5 cut(s)	83, 165, 653, 1010, 1659
BslFI	GGGAC	1 cut(s)	1125
BslI	CCNNNNNNNGG	4 cut(s)	240, 241, 1135, 1772
BsmAI	GTCTC	5 cut(s)	6, 177, 899, 1238, 1300
BsmFI	GGGAC	1 cut(s)	1125
BsnI	GGCC	2 cut(s)	581, 1336
Bso31I	GGTCTC	1 cut(s)	1300
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	1219, 1616
Bsp13I	TCCGGA	1 cut(s)	1658
Bsp1407I	TGTACA	2 cut(s)	408, 1464
Bsp1720I	GCTNAGC	1 cut(s)	1523
Bsp68I	TCGCGA	1 cut(s)	897
BspACI	CCGC	5 cut(s)	47, 71, 320, 365, 415
BspANI	GGCC	2 cut(s)	581, 1336
BspCNI	CTCAG	2 cut(s)	388, 532
BspEI	TCCGGA	1 cut(s)	1658
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	8 cut(s)	8, 69, 90, 216, 651, 1071, 1337, 1615
BspMAI	CTGCAG	1 cut(s)	1690
BspMI	ACCTGC	1 cut(s)	954
BspOI	GCTAGC	1 cut(s)	1253
BspPI	GGATC	8 cut(s)	141, 209, 222, 270, 321, 1064, 1077, 1353
BspT107I	GGYRCC	2 cut(s)	67, 88
BspTNI	GGTCTC	1 cut(s)	1300
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	164
BsrGI	TGTACA	2 cut(s)	408, 1464
BsrI	ACTGG	2 cut(s)	842, 1760
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	6 cut(s)	582, 1106, 1130, 1339, 1443, 1676
BssNAI	GTATAC	1 cut(s)	1007
BssNI	GRCGYC	2 cut(s)	44, 68
BssT1I	CCWWGG	2 cut(s)	1339, 1676
Bst1107I	GTATAC	1 cut(s)	1007
Bst2UI	CCWGG	4 cut(s)	219, 583, 1132, 1802
Bst4CI	ACNGT	8 cut(s)	408, 544, 910, 1261, 1421, 1447, 1469, 1518
Bst6I	CTCTTC	4 cut(s)	101, 242, 429, 894
BstACI	GRCGYC	2 cut(s)	44, 68
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstAUI	TGTACA	2 cut(s)	408, 1464
BstC8I	GCNNGC	9 cut(s)	51, 162, 166, 365, 795, 885, 1215, 1251, 1669
BstDEI	CTNAG	3 cut(s)	375, 519, 1523
BstDSI	CCRYGG	2 cut(s)	1106, 1443
BstF5I	GGATG	5 cut(s)	772, 859, 1154, 1413, 1754
BstFNI	CGCG	1 cut(s)	897
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	70, 1695, 1707
BstMAI	GTCTC	5 cut(s)	6, 177, 899, 1238, 1300
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 157, 254, 326, 335, 1223, 1723
BstNI	CCWGG	4 cut(s)	219, 583, 1132, 1802
BstNSI	RCATGY	1 cut(s)	871
BstPAI	GACNNNNGTC	1 cut(s)	1191
BstSCI	CCNGG	5 cut(s)	217, 581, 1009, 1130, 1800
BstSFI	CTRYAG	2 cut(s)	1374, 1686
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	5 cut(s)	232, 714, 1210, 1361, 1729
BstV2I	GAAGAC	3 cut(s)	68, 1043, 1299
BstX2I	RGATCY	5 cut(s)	214, 515, 860, 1069, 1100
BstYI	RGATCY	5 cut(s)	214, 515, 860, 1069, 1100
BstZ17I	GTATAC	1 cut(s)	1007
BsuRI	GGCC	2 cut(s)	581, 1336
BtgI	CCRYGG	2 cut(s)	1106, 1443
BtsCI	GGATG	5 cut(s)	772, 859, 1154, 1413, 1754
BtsI	GCAGTG	1 cut(s)	1695
BtsIMutI	CAGTG	2 cut(s)	1695, 1740
BtuMI	TCGCGA	1 cut(s)	897
BveI	ACCTGC	1 cut(s)	954
Cac8I	GCNNGC	9 cut(s)	51, 162, 166, 365, 795, 885, 1215, 1251, 1669
CaiI	CAGNNNCTG	1 cut(s)	1058
CfoI	GCGC	3 cut(s)	70, 1695, 1707
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	6, 1335
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	409, 1355, 1465
CviAII	CATG	5 cut(s)	57, 289, 368, 868, 1830
CviQI	GTAC	3 cut(s)	409, 1355, 1465
DdeI	CTNAG	3 cut(s)	375, 519, 1523
DinI	GGCGCC	1 cut(s)	69
DraIII	CACNNNGTG	1 cut(s)	148
Eam1104I	CTCTTC	4 cut(s)	101, 242, 429, 894
EarI	CTCTTC	4 cut(s)	101, 242, 429, 894
Ecl136II	GAGCTC	1 cut(s)	1217
Eco130I	CCWWGG	2 cut(s)	1339, 1676
Eco24I	GRGCYC	2 cut(s)	1219, 1616
Eco31I	GGTCTC	1 cut(s)	1300
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	1217
Eco57I	CTGAAG	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	1217
EcoO109I	RGGNCCY	1 cut(s)	1335
EcoRII	CCWGG	4 cut(s)	217, 581, 1130, 1800
EcoT14I	CCWWGG	2 cut(s)	1339, 1676
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	2 cut(s)	1219, 1616
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	1339, 1676
FaeI	CATG	5 cut(s)	60, 292, 371, 871, 1833
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	1 cut(s)	1125
FatI	CATG	5 cut(s)	56, 288, 367, 867, 1829
FauI	CCCGC	1 cut(s)	372
FauNDI	CATATG	1 cut(s)	696
FbaI	TGATCA	2 cut(s)	919, 1711
FblI	GTMKAC	1 cut(s)	1006
Fnu4HI	GCNGC	7 cut(s)	47, 71, 246, 728, 1224, 1350, 1718
FokI	GGATG	5 cut(s)	779, 866, 1161, 1420, 1741
FriOI	GRGCYC	2 cut(s)	1219, 1616
Fsp4HI	GCNGC	7 cut(s)	47, 71, 246, 728, 1224, 1350, 1718
FspBI	CTAG	4 cut(s)	569, 969, 1250, 1299
GlaI	GCGC	3 cut(s)	69, 1694, 1706
GluI	GCNGC	7 cut(s)	47, 71, 246, 728, 1224, 1350, 1718
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	859, 1035
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	581, 1336
HapII	CCGG	5 cut(s)	83, 165, 653, 1010, 1659
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	3 cut(s)	70, 1695, 1707
Hin1I	GRCGYC	2 cut(s)	44, 68
Hin1II	CATG	5 cut(s)	60, 292, 371, 871, 1833
Hin6I	GCGC	3 cut(s)	68, 1693, 1705
HinP1I	GCGC	3 cut(s)	68, 1693, 1705
HindIII	AAGCTT	1 cut(s)	1619
HinfI	GANTC	7 cut(s)	170, 371, 380, 743, 770, 1625, 1730
HpaII	CCGG	5 cut(s)	83, 165, 653, 1010, 1659
HphI	GGTGA	3 cut(s)	614, 1302, 1665
Hpy166II	GTNNAC	3 cut(s)	6, 1007, 1124
Hpy188I	TCNGA	7 cut(s)	100, 124, 185, 1273, 1407, 1531, 1767
Hpy188III	TCNNGA	9 cut(s)	40, 377, 420, 750, 876, 896, 1073, 1659, 1820
Hpy8I	GTNNAC	3 cut(s)	6, 1007, 1124
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	9 cut(s)	129, 417, 470, 489, 523, 873, 982, 1235, 1762
HpyCH4III	ACNGT	8 cut(s)	408, 544, 910, 1261, 1421, 1447, 1469, 1518
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 157, 254, 326, 335, 1223, 1723
HpyF3I	CTNAG	3 cut(s)	375, 519, 1523
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	2 cut(s)	44, 68
Hsp92II	CATG	5 cut(s)	60, 292, 371, 871, 1833
HspAI	GCGC	3 cut(s)	68, 1693, 1705
KasI	GGCGCC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	1658
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	919, 1711
LmnI	GCTCC	6 cut(s)	649, 1013, 1060, 1222, 1619, 1723
Lsp1109I	GCAGC	5 cut(s)	232, 714, 1210, 1361, 1729
LweI	GCATC	2 cut(s)	681, 1336
MaeI	CTAG	4 cut(s)	569, 969, 1250, 1299
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	1562
MbiI	CCGCTC	1 cut(s)	320
MfeI	CAATTG	2 cut(s)	294, 308
MflI	RGATCY	5 cut(s)	214, 515, 860, 1069, 1100
MhlI	GDGCHC	2 cut(s)	1219, 1616
MluCI	AATT	9 cut(s)	294, 308, 458, 537, 673, 1077, 1082, 1314, 1387
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	3 cut(s)	1138, 1243, 1450
Mph1103I	ATGCAT	1 cut(s)	696
MroI	TCCGGA	1 cut(s)	1658
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	3 cut(s)	387, 836, 1116
MspI	CCGG	5 cut(s)	83, 165, 653, 1010, 1659
MspR9I	CCNGG	5 cut(s)	219, 583, 1011, 1132, 1802
MunI	CAATTG	2 cut(s)	294, 308
MvaI	CCWGG	4 cut(s)	219, 583, 1132, 1802
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	7 cut(s)	33, 157, 254, 326, 335, 1223, 1723
NaeI	GCCGGC	1 cut(s)	166
NarI	GGCGCC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	1011
NdeI	CATATG	1 cut(s)	696
NgoMIV	GCCGGC	1 cut(s)	164
NheI	GCTAGC	1 cut(s)	1249
NlaIII	CATG	5 cut(s)	60, 292, 371, 871, 1833
NlaIV	GGNNCC	8 cut(s)	8, 69, 90, 216, 651, 1071, 1337, 1615
NruI	TCGCGA	1 cut(s)	897
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	871
PciI	ACATGT	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	6 cut(s)	371, 380, 743, 770, 1625, 1730
PfoI	TCCNGGA	1 cut(s)	1800
PkrI	GCNGC	7 cut(s)	48, 72, 247, 729, 1225, 1351, 1719
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	178
PscI	ACATGT	1 cut(s)	867
PshAI	GACNNNNGTC	1 cut(s)	1191
Psp124BI	GAGCTC	1 cut(s)	1219
Psp6I	CCWGG	4 cut(s)	217, 581, 1130, 1800
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	4 cut(s)	217, 581, 1130, 1800
PspN4I	GGNNCC	8 cut(s)	8, 69, 90, 216, 651, 1071, 1337, 1615
PspPI	GGNCC	2 cut(s)	6, 1335
PstI	CTGCAG	1 cut(s)	1690
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	5 cut(s)	214, 515, 860, 1069, 1100
RruI	TCGCGA	1 cut(s)	897
RsaI	GTAC	3 cut(s)	410, 1356, 1466
RsaNI	GTAC	3 cut(s)	409, 1355, 1465
SacI	GAGCTC	1 cut(s)	1219
SaqAI	TTAA	3 cut(s)	387, 836, 1116
SatI	GCNGC	7 cut(s)	47, 71, 246, 728, 1224, 1350, 1718
Sau96I	GGNCC	2 cut(s)	6, 1335
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	5 cut(s)	219, 583, 1011, 1132, 1802
SduI	GDGCHC	2 cut(s)	1219, 1616
SfaNI	GCATC	2 cut(s)	681, 1336
SfcI	CTRYAG	2 cut(s)	1374, 1686
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	1596
SmoI	CTYRAG	1 cut(s)	1596
Sse9I	AATT	9 cut(s)	294, 308, 458, 537, 673, 1077, 1082, 1314, 1387
SsiI	CCGC	5 cut(s)	47, 71, 320, 365, 415
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	4 cut(s)	569, 969, 1250, 1299
SstI	GAGCTC	1 cut(s)	1219
StyD4I	CCNGG	5 cut(s)	217, 581, 1009, 1130, 1800
StyI	CCWWGG	2 cut(s)	1339, 1676
TaaI	ACNGT	8 cut(s)	408, 544, 910, 1261, 1421, 1447, 1469, 1518
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	5 cut(s)	41, 265, 316, 1228, 1500
TaqII	GACCGA	3 cut(s)	827, 1203, 1282
TasI	AATT	9 cut(s)	294, 308, 458, 537, 673, 1077, 1082, 1314, 1387
TatI	WGTACW	2 cut(s)	408, 1464
TauI	GCSGC	2 cut(s)	49, 73
TfiI	GAWTC	6 cut(s)	371, 380, 743, 770, 1625, 1730
Tru1I	TTAA	3 cut(s)	387, 836, 1116
Tru9I	TTAA	3 cut(s)	387, 836, 1116
TscAI	CASTG	2 cut(s)	1695, 1740
TseI	GCWGC	5 cut(s)	245, 727, 1223, 1349, 1717
TspDTI	ATGAA	9 cut(s)	317, 713, 735, 783, 1001, 1185, 1254, 1424, 1740
TspGWI	ACGGA	1 cut(s)	1095
TspRI	CASTG	2 cut(s)	1695, 1740
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	1 cut(s)	1077
XceI	RCATGY	1 cut(s)	871
XmiI	GTMKAC	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	4 cut(s)	569, 969, 1250, 1299
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.