Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Forward (+)

11843017 .. 11847229

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGCAGCAAGGCAATTACACAACTGCTGAAGAACATTACAAGAATGCTCTGGCACTGGAGCCAGATAAGAACAAGCAGTGCAACTTAGCAGTCTGCTTGATGCACATGAACAGAATTATAGAAGCAAGGCATCTGCTTCAAGCTGTAAGAGATTCATCTGGAAATAAACCAATGGATGAATCTTATGCTAAGTCCTTCGAACGTGCTTTTGAAATGCTGACTGAACTGGAGCAGCAATCAGTTTTAAGACCAATTCAACAGAACGAGAACTACTGCACTGGAATTTCAAGAACACCCAAAGATTTTGTTTCTGGTTATATGCCTATGCCTCCCAGAAGGTGGACAGATGGACCTGAAGGTGTGACAGTGATAGCGAATGAACAGCATAGAGAGTCATTCAGACCTGGAAGTTGTGCAAAGTCTTTTGATAAATGGAAGAAAGATTATGATCTCAAAAACACAGGTGATAGCAGGCCTAGTTTTTCGAGCAAAATGAAGGAAAATCAGGATGGTTTGATAGGAACAGAAGTAAATCCACATGAAAAAACATATGCTTCTCCAGTTCTATATACACAACCAAGAAGACCTCCATGGGGATTTAATGACGGACATCAGAGAAGTGAGATATGGGGCCATGGTGTTGGCAGTTCAAATAAAAAGCTTCCATCTGAAAGATCAACAGGAAATGTTCGAGCACATGTTGTTCGAAATCTGAATGTAGACTTGCTTGCTTCAACTACTAGAAAGTCAGAGTCTACTCTCTCTTCACCAAGTCTCAGAGATTGGAGGATGCCCCAAGGAGGTGCAGTGGTAAGACCTGTTTTACAACCTATATCAAGTATGACTTCTAGGGGGAATGAAGGCCATCTCCCAGTGAGAAATGAAGCCATGATCGACCATTCTTCAGAGCATACAGTAAATGGTGATAGAAGAAGGGTTACTTGGGATAAAGATGGTATGAAGAAATTTTCTGCAGAACCACAAATGGTTGATGAAAATGCAAAAGCACTGGAAATTTCTATTGATGGAGGTGAGAATCAGAGTACTGACACAACTGTTTTAAGGAGCATGGAAAACATGAATGCTTCTGTGGAAGAAGATTGCTTGGGAGACAACAGTTCTGGTACATTGGATAATGTCCATCAGTCCCCAGCAGATAATGAAAAGCCAACCCCTGATTTTTGGAAGTACAGTGGTAAGAAAAGCTGGGCAGATATGGTGGAAGAAGAAGAAGAAGAAGAAGAGCTGCGAAGTGGAAGAACTGGGAATTTTGATAGTTGGAATACTGGAGATGAGTTTGATGATGAAAACAGGAATCCCAACACAATGACTCCTCAAAGTCCTCAATTTCAAACTCAAATGAAGGATTTGAGCAAAAAGGCTGAATCAATTGATCTAAAAGGTGCGACATCTGGAAATGCTAGTTCAGCAAGGAATCCTACCACGCGCCGTTCTTTGGTTTTTGATCAGCAGCAGGAGTTGGAATCAGTAGATTACATCAGTTCATCTCCTGTTGCAAAGGAGGCTTTGAATGGAAATGGCTCTATTTACGGAAAGAACTTGAAACTGAAGAGGGGAAACAGGCTGCAGAGTTTCCAGGATATAACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

537

Amino Acids

60.36

Weight (kDa)

5.69

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_19	PF14559	1 - 52	1.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	2 cut(s)	720, 755
AccII	CGCG	1 cut(s)	1447
AcsI	RAATTY	4 cut(s)	282, 965, 1014, 1267
AcuI	CTGAAG	4 cut(s)	48, 375, 888, 1589
AfaI	GTAC	3 cut(s)	1045, 1126, 1190
AfiI	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1456
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	9 cut(s)	140, 212, 257, 288, 651, 735, 1352, 1531, 1564
AjnI	CCWGG	2 cut(s)	403, 1596
AjuI	GAANNNNNNNTTGG	2 cut(s)	925, 957
AluBI	AGCT	4 cut(s)	143, 661, 1206, 1246
AluI	AGCT	4 cut(s)	143, 661, 1206, 1246
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	779, 1104
AoxI	GGCC	3 cut(s)	473, 631, 862
ApeKI	GCWGC	5 cut(s)	4, 232, 1246, 1471, 1585
ApoI	RAATTY	4 cut(s)	282, 965, 1014, 1267
AspLEI	GCGC	1 cut(s)	1449
AspS9I	GGNCC	2 cut(s)	350, 631
AsuHPI	GGTGA	4 cut(s)	476, 759, 935, 1043
AsuII	TTCGAA	2 cut(s)	198, 706
AvaII	GGWCC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	922, 954
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	5 cut(s)	16, 244, 1233, 1483, 1572
BccI	CCATC	7 cut(s)	341, 503, 673, 873, 947, 1019, 1149
BceAI	ACGGC	1 cut(s)	1434
BciT130I	CCWGG	2 cut(s)	405, 1598
BclI	TGATCA	1 cut(s)	1465
BcoDI	GTCTC	2 cut(s)	779, 1104
BfaI	CTAG	4 cut(s)	477, 741, 849, 1422
BfmI	CTRYAG	2 cut(s)	972, 1586
BisI	GCNGC	5 cut(s)	5, 233, 1247, 1472, 1586
BlsI	GCNGC	5 cut(s)	6, 234, 1248, 1473, 1587
BmcAI	AGTACT	1 cut(s)	1045
Bme1390I	CCNGG	2 cut(s)	405, 1598
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	350, 631
BmiI	GGNNCC	2 cut(s)	60, 632
BmrFI	CCNGG	2 cut(s)	405, 1598
BmrI	ACTGGG	2 cut(s)	866, 1272
BmsI	GCATC	3 cut(s)	90, 139, 780
BmuI	ACTGGG	2 cut(s)	866, 1272
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	4 cut(s)	77, 248, 543, 1308
Bpu14I	TTCGAA	2 cut(s)	198, 706
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	590, 634, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	792, 822, 1315, 1345
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1456
Bse1I	ACTGG	8 cut(s)	60, 231, 283, 560, 872, 1014, 1267, 1291
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	405, 1598
BseDI	CCNNGG	3 cut(s)	590, 634, 796
BseGI	GGATG	3 cut(s)	181, 514, 795
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1456
BseMII	CTCAG	1 cut(s)	790
BseNI	ACTGG	8 cut(s)	60, 231, 283, 560, 872, 1014, 1267, 1291
BseRI	GAGGAG	1 cut(s)	1323
BseXI	GCAGC	5 cut(s)	16, 244, 1233, 1483, 1572
BseYI	CCCAGC	2 cut(s)	1150, 1206
BsgI	GTGCAG	2 cut(s)	259, 825
Bsh1236I	CGCG	1 cut(s)	1447
BshFI	GGCC	3 cut(s)	475, 633, 864
BsiHKAI	GWGCWC	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	1132
BslI	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1456
BsmAI	GTCTC	2 cut(s)	779, 1104
BsmFI	GGGAC	1 cut(s)	1132
BsmI	GAATGC	2 cut(s)	49, 1087
BsnI	GGCC	3 cut(s)	475, 633, 864
Bsp119I	TTCGAA	2 cut(s)	198, 706
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	5 cut(s)	448, 674, 891, 1393, 1465
Bsp19I	CCATGG	2 cut(s)	590, 634
BspANI	GGCC	3 cut(s)	475, 633, 864
BspCNI	CTCAG	1 cut(s)	789
BspFNI	CGCG	1 cut(s)	1447
BspLI	GGNNCC	2 cut(s)	60, 632
BspMAI	CTGCAG	2 cut(s)	976, 1590
BspQI	GCTCTTC	1 cut(s)	1236
BspT104I	TTCGAA	2 cut(s)	198, 706
BsrI	ACTGG	8 cut(s)	60, 231, 283, 560, 872, 1014, 1267, 1291
BssECI	CCNNGG	3 cut(s)	590, 634, 796
BssMI	GATC	5 cut(s)	448, 674, 891, 1393, 1465
BssT1I	CCWWGG	3 cut(s)	590, 634, 796
Bst2UI	CCWGG	2 cut(s)	405, 1598
Bst4CI	ACNGT	5 cut(s)	367, 916, 1057, 1118, 1193
Bst6I	CTCTTC	3 cut(s)	769, 1236, 1565
BstBI	TTCGAA	2 cut(s)	198, 706
BstC8I	GCNNGC	2 cut(s)	473, 729
BstDEI	CTNAG	3 cut(s)	85, 189, 776
BstDSI	CCRYGG	2 cut(s)	590, 634
BstF5I	GGATG	3 cut(s)	181, 514, 795
BstFNI	CGCG	1 cut(s)	1447
BstHHI	GCGC	1 cut(s)	1449
BstKTI	GATC	5 cut(s)	451, 677, 894, 1396, 1468
BstMAI	GTCTC	2 cut(s)	779, 1104
BstMBI	GATC	5 cut(s)	448, 674, 891, 1393, 1465
BstMWI	GCNNNNNNNGC	2 cut(s)	1427, 1523
BstNI	CCWGG	2 cut(s)	405, 1598
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	403, 1596
BstSFI	CTRYAG	2 cut(s)	972, 1586
BstUI	CGCG	1 cut(s)	1447
BstV1I	GCAGC	5 cut(s)	16, 244, 1233, 1483, 1572
BstV2I	GAAGAC	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	641
BsuRI	GGCC	3 cut(s)	475, 633, 864
BtgI	CCRYGG	2 cut(s)	590, 634
BtsCI	GGATG	3 cut(s)	181, 514, 795
BtsI	GCAGTG	2 cut(s)	83, 813
BtsIMutI	CAGTG	8 cut(s)	53, 83, 276, 372, 813, 879, 1007, 1198
Cac8I	GCNNGC	2 cut(s)	473, 729
CfoI	GCGC	1 cut(s)	1449
Cfr13I	GGNCC	2 cut(s)	350, 631
Csp6I	GTAC	3 cut(s)	1044, 1125, 1189
CviAII	CATG	8 cut(s)	106, 539, 591, 635, 698, 889, 1069, 1078
CviQI	GTAC	3 cut(s)	1044, 1125, 1189
DdeI	CTNAG	3 cut(s)	85, 189, 776
DpnI	GATC	5 cut(s)	450, 676, 893, 1395, 1467
DpnII	GATC	5 cut(s)	448, 674, 891, 1393, 1465
Eam1104I	CTCTTC	3 cut(s)	769, 1236, 1565
EarI	CTCTTC	3 cut(s)	769, 1236, 1565
Eco130I	CCWWGG	3 cut(s)	590, 634, 796
Eco147I	AGGCCT	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	4 cut(s)	48, 375, 888, 1589
EcoRII	CCWGG	2 cut(s)	403, 1596
EcoT14I	CCWWGG	3 cut(s)	590, 634, 796
ErhI	CCWWGG	3 cut(s)	590, 634, 796
FaeI	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
FalI	AAGNNNNNCTT	4 cut(s)	829, 861, 925, 957
FaqI	GGGAC	1 cut(s)	1132
FatI	CATG	8 cut(s)	105, 538, 590, 634, 697, 888, 1068, 1077
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	1465
FblI	GTMKAC	2 cut(s)	720, 755
Fnu4HI	GCNGC	5 cut(s)	5, 233, 1247, 1472, 1586
FokI	GGATG	3 cut(s)	188, 521, 802
Fsp4HI	GCNGC	5 cut(s)	5, 233, 1247, 1472, 1586
FspBI	CTAG	4 cut(s)	477, 741, 849, 1422
GlaI	GCGC	1 cut(s)	1448
GluI	GCNGC	5 cut(s)	5, 233, 1247, 1472, 1586
GsaI	CCCAGC	2 cut(s)	1154, 1210
GsuI	CTGGAG	4 cut(s)	77, 248, 543, 1308
HaeIII	GGCC	3 cut(s)	475, 633, 864
HhaI	GCGC	1 cut(s)	1449
Hin1II	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
Hin6I	GCGC	1 cut(s)	1447
HinP1I	GCGC	1 cut(s)	1447
HindIII	AAGCTT	1 cut(s)	659
HphI	GGTGA	4 cut(s)	476, 759, 935, 1043
Hpy166II	GTNNAC	3 cut(s)	342, 721, 756
Hpy188I	TCNGA	8 cut(s)	401, 615, 670, 714, 751, 779, 907, 1041
Hpy188III	TCNNGA	4 cut(s)	159, 288, 506, 1413
Hpy8I	GTNNAC	3 cut(s)	342, 721, 756
HpyAV	CCTTC	7 cut(s)	205, 330, 350, 490, 854, 927, 1357
HpyCH4III	ACNGT	5 cut(s)	367, 916, 1057, 1118, 1193
HpyCH4IV	ACGT	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1427, 1523
HpyF3I	CTNAG	3 cut(s)	85, 189, 776
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
HspAI	GCGC	1 cut(s)	1447
Ksp22I	TGATCA	1 cut(s)	1465
Kzo9I	GATC	5 cut(s)	448, 674, 891, 1393, 1465
LguI	GCTCTTC	1 cut(s)	1236
LmnI	GCTCC	3 cut(s)	58, 229, 1065
Lsp1109I	GCAGC	5 cut(s)	16, 244, 1233, 1483, 1572
LweI	GCATC	3 cut(s)	90, 139, 780
MaeI	CTAG	4 cut(s)	477, 741, 849, 1422
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	361, 937
MalI	GATC	5 cut(s)	450, 676, 893, 1395, 1467
MboI	GATC	5 cut(s)	448, 674, 891, 1393, 1465
MfeI	CAATTG	1 cut(s)	1389
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	9 cut(s)	13, 114, 252, 282, 965, 1014, 1267, 1346, 1389
MlyI	GAGTC	3 cut(s)	401, 761, 1324
MmeI	TCCRAC	2 cut(s)	1259, 1461
MnlI	CCTC	9 cut(s)	339, 597, 780, 794, 1022, 1344, 1353, 1516, 1566
MseI	TTAA	3 cut(s)	245, 600, 1061
MspR9I	CCNGG	2 cut(s)	405, 1598
MunI	CAATTG	1 cut(s)	1389
Mva1269I	GAATGC	2 cut(s)	49, 1087
MvaI	CCWGG	2 cut(s)	405, 1598
MvnI	CGCG	1 cut(s)	1447
MwoI	GCNNNNNNNGC	2 cut(s)	1427, 1523
NcoI	CCATGG	2 cut(s)	590, 634
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	5 cut(s)	448, 674, 891, 1393, 1465
NlaIII	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
NlaIV	GGNNCC	2 cut(s)	60, 632
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	2 cut(s)	198, 706
PceI	AGGCCT	1 cut(s)	475
PciI	ACATGT	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	1236
PctI	GAATGC	2 cut(s)	49, 1087
PfeI	GAWTC	7 cut(s)	152, 179, 1036, 1315, 1385, 1435, 1484
PflMI	CCANNNNNTGG	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	1596
PkrI	GCNGC	5 cut(s)	6, 234, 1248, 1473, 1587
PleI	GAGTC	3 cut(s)	400, 760, 1324
PpsI	GAGTC	3 cut(s)	400, 760, 1324
PscI	ACATGT	1 cut(s)	697
Psp6I	CCWGG	2 cut(s)	403, 1596
PspFI	CCCAGC	2 cut(s)	1150, 1206
PspGI	CCWGG	2 cut(s)	403, 1596
PspN4I	GGNNCC	2 cut(s)	60, 632
PspPI	GGNCC	2 cut(s)	350, 631
PsrI	GAACNNNNNNTAC	2 cut(s)	254, 286
PstI	CTGCAG	2 cut(s)	976, 1590
RsaI	GTAC	3 cut(s)	1045, 1126, 1190
RsaNI	GTAC	3 cut(s)	1044, 1125, 1189
SapI	GCTCTTC	1 cut(s)	1236
SaqAI	TTAA	3 cut(s)	245, 600, 1061
SatI	GCNGC	5 cut(s)	5, 233, 1247, 1472, 1586
Sau3AI	GATC	5 cut(s)	448, 674, 891, 1393, 1465
Sau96I	GGNCC	2 cut(s)	350, 631
ScaI	AGTACT	1 cut(s)	1045
SchI	GAGTC	3 cut(s)	401, 761, 1324
ScrFI	CCNGG	2 cut(s)	405, 1598
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	90, 139, 780
SfcI	CTRYAG	2 cut(s)	972, 1586
SfuI	TTCGAA	2 cut(s)	198, 706
SinI	GGWCC	1 cut(s)	350
Sse9I	AATT	9 cut(s)	13, 114, 252, 282, 965, 1014, 1267, 1346, 1389
SseBI	AGGCCT	1 cut(s)	475
SspMI	CTAG	4 cut(s)	477, 741, 849, 1422
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	403, 1596
StyI	CCWWGG	3 cut(s)	590, 634, 796
TaaI	ACNGT	5 cut(s)	367, 916, 1057, 1118, 1193
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	5 cut(s)	198, 485, 691, 706, 894
TasI	AATT	9 cut(s)	13, 114, 252, 282, 965, 1014, 1267, 1346, 1389
TatI	WGTACW	2 cut(s)	1043, 1188
TfiI	GAWTC	7 cut(s)	152, 179, 1036, 1315, 1385, 1435, 1484
Tru1I	TTAA	3 cut(s)	245, 600, 1061
Tru9I	TTAA	3 cut(s)	245, 600, 1061
TscAI	CASTG	8 cut(s)	60, 83, 283, 372, 813, 879, 1014, 1198
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	5 cut(s)	4, 232, 1246, 1471, 1585
Tsp45I	GTSAC	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	621, 1566
TspRI	CASTG	8 cut(s)	60, 83, 283, 372, 813, 879, 1014, 1198
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	4 cut(s)	282, 965, 1014, 1267
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	2 cut(s)	720, 755
XspI	CTAG	4 cut(s)	477, 741, 849, 1422
ZrmI	AGTACT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.