Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Forward (+)

11348256 .. 11354128

Gene Structure 5873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG125800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGCAGCAAGGCAATTACACAACTGCTGAAGAACATTACAAGAATGCTCTGGCACTGGAGCCAGATAAGAACAAGCAGTGCAACTTAGCAGTCTGCTTGATGCACATGAACAGAATTATAGAAGCAAGGCATCTGCTTCAAGCTGTAAGAGATTCATCTGGAAATAAACCAATGGATGAATCTTATGCTAAGTCCTTCGAACGTGCTTTTGAAATGCTGACTGAACTGGAGCAGCAATCAGTTTTAAGACCAATTCAACAGAACGACAACTACTGCACTGGAATTTCAAGAACACCCAAAGATTTTGTTTCTGGTTATATGCCTATGCCTCCCAGAAGGTGGACAGATGGACCTGAAGGTGTGACAGTGATAGCGAATGAACAGCATAGAGAGTCATTCAGACCTGGAAGTTGTGCAAAGTCTTTTGATAAATGGAAGAAAGATTATGATCTCAAAAACACAGGTGATAGCAGACCTAGTTTTTCGAGCAAAATGAAGGAAAATCAGGATGGTTTGATAGGAACAGAAGTAAATCTACATGAAAAAACATATGCTTCTCCAGTTCTATATACACAACCAAGAAGACCTCCATGGGGATTTAATGACGGACATCAGAGAAGTGAGATATGGGGCCATGGTGTTGGCAGTTCAAATAAAAAGCTTCCATCTGAAAGATCAACAGGAAATGTTAGAGCACATGTTGTTCGAAATCTGAATGTAGACTTGCTTGCTTCAACTACTAGAAAGTCAGACTCTACTCTCTCTTCACCAAGTCGCAGAGATTGGAGGATGCCCCAAGGAGGTGCAGTGGCAAGACCTGTTTTACAACCTATATTAAGTATGACTTCTAGGGGGAATGAAGGCCATCTCTCAGTGAGAAATGAAGCCATGATCGACCATTCTTCAGAGCATACAGTAAATGGTGATAGAAGATGGGTTACTTGGGATAAAGATGGTATGAAGAAATCTGCTGCAGAACCACAAATGGTTGATGAAAATGCAAAAGCACTGGAAATTTCTACTGATGGAGGTGAGAATCAGAGTACTGACAAAACTGTTTCAAGGAGCATGGAAAACATGAATGCTTCTGTGGAAGAAGATTGCTTGGGAGACAACAGTTCTGGTACATTGGATAATGTCCATCAGTCCCCAGCAGATAATGAAAAGCCAACCCCTGATTTTTGGAAGTACAGTGGTAAGAAAAGCTGGGCAGATATGGTGGAAGAAGAAGAAGAAGAGCTGCGAAGTGGAAGAACTGGGTATTTTGATAGTTGGAATACTGGAGATGAGTTTGATGATGAAAACAGGAATCCCAACACAATGACTCCTCGAAGTCCTCAGTTTCAAACTCAAATAAAGGATTTGAGCAAAAAGGCTGAATCAATTGATCTAAAAGGTGTGACATCTGGAAATGCTAGTTCAGCAAGGAATCCTACCACGCGCCGTTCTTTGGTTTTTGATCAGCAGCAGGAGTTGGAACCAGTAGATTACATCAGTTCATCTCCTGTTGCAAAGGAGGCTTTGAATGGAAATGGCTCTATTTACGGAAAGAACTTGAAACTGAAGACGCGAAACAGGCTGCAGAGTTTCCAGGATATAACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

535

Amino Acids

60.21

Weight (kDa)

6.03

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_19	PF14559	1 - 52	1.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	2 cut(s)	1441, 1570
AcsI	RAATTY	2 cut(s)	282, 1014
AcuI	CTGAAG	4 cut(s)	48, 375, 888, 1583
AfaI	GTAC	3 cut(s)	1045, 1126, 1190
AfiI	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1450
AflIII	ACRYGT	1 cut(s)	697
AjnI	CCWGG	2 cut(s)	403, 1590
AluBI	AGCT	4 cut(s)	143, 661, 1206, 1240
AluI	AGCT	4 cut(s)	143, 661, 1206, 1240
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	1104
AoxI	GGCC	2 cut(s)	631, 862
ApeKI	GCWGC	6 cut(s)	4, 232, 971, 1240, 1465, 1579
ApoI	RAATTY	2 cut(s)	282, 1014
AspLEI	GCGC	1 cut(s)	1443
AspS9I	GGNCC	2 cut(s)	350, 631
AsuHPI	GGTGA	4 cut(s)	476, 759, 935, 1043
AsuII	TTCGAA	2 cut(s)	198, 706
AvaII	GGWCC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	4 cut(s)	519, 551, 922, 954
BbsI	GAAGAC	2 cut(s)	589, 1571
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	6 cut(s)	16, 244, 958, 1227, 1477, 1566
BccI	CCATC	8 cut(s)	341, 503, 673, 873, 927, 947, 1019, 1149
BceAI	ACGGC	1 cut(s)	1428
BciT130I	CCWGG	2 cut(s)	405, 1592
BclI	TGATCA	1 cut(s)	1459
BcoDI	GTCTC	1 cut(s)	1104
BfaI	CTAG	4 cut(s)	477, 741, 849, 1416
BfmI	CTRYAG	2 cut(s)	972, 1580
BisI	GCNGC	6 cut(s)	5, 233, 972, 1241, 1466, 1580
BlsI	GCNGC	6 cut(s)	6, 234, 973, 1242, 1467, 1581
BmcAI	AGTACT	1 cut(s)	1045
Bme1390I	CCNGG	2 cut(s)	405, 1592
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	350, 631
BmiI	GGNNCC	3 cut(s)	60, 632, 1479
BmrFI	CCNGG	2 cut(s)	405, 1592
BmrI	ACTGGG	1 cut(s)	1266
BmsI	GCATC	3 cut(s)	90, 139, 780
BmuI	ACTGGG	1 cut(s)	1266
BpiI	GAAGAC	2 cut(s)	589, 1571
BpmI	CTGGAG	4 cut(s)	77, 248, 543, 1302
Bpu14I	TTCGAA	2 cut(s)	198, 706
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	590, 634, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	792, 822, 1309, 1339
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1450
Bse1I	ACTGG	8 cut(s)	60, 231, 283, 560, 1014, 1261, 1285, 1481
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	405, 1592
BseDI	CCNNGG	3 cut(s)	590, 634, 796
BseGI	GGATG	3 cut(s)	181, 514, 795
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1450
BseMII	CTCAG	2 cut(s)	885, 1352
BseNI	ACTGG	8 cut(s)	60, 231, 283, 560, 1014, 1261, 1285, 1481
BseRI	GAGGAG	1 cut(s)	1317
BseXI	GCAGC	6 cut(s)	16, 244, 958, 1227, 1477, 1566
BseYI	CCCAGC	2 cut(s)	1150, 1206
BsgI	GTGCAG	2 cut(s)	259, 825
Bsh1236I	CGCG	2 cut(s)	1441, 1570
BshFI	GGCC	2 cut(s)	633, 864
BsiHKAI	GWGCWC	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	1132
BslI	CCNNNNNNNGG	4 cut(s)	339, 593, 800, 1450
BsmAI	GTCTC	1 cut(s)	1104
BsmFI	GGGAC	1 cut(s)	1132
BsmI	GAATGC	2 cut(s)	49, 1087
BsnI	GGCC	2 cut(s)	633, 864
Bsp119I	TTCGAA	2 cut(s)	198, 706
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	5 cut(s)	448, 674, 891, 1387, 1459
Bsp19I	CCATGG	2 cut(s)	590, 634
BspANI	GGCC	2 cut(s)	633, 864
BspCNI	CTCAG	2 cut(s)	884, 1351
BspFNI	CGCG	2 cut(s)	1441, 1570
BspLI	GGNNCC	3 cut(s)	60, 632, 1479
BspMAI	CTGCAG	2 cut(s)	976, 1584
BspQI	GCTCTTC	1 cut(s)	1230
BspT104I	TTCGAA	2 cut(s)	198, 706
BsrI	ACTGG	8 cut(s)	60, 231, 283, 560, 1014, 1261, 1285, 1481
BssECI	CCNNGG	3 cut(s)	590, 634, 796
BssMI	GATC	5 cut(s)	448, 674, 891, 1387, 1459
BssT1I	CCWWGG	3 cut(s)	590, 634, 796
Bst2UI	CCWGG	2 cut(s)	405, 1592
Bst4CI	ACNGT	5 cut(s)	367, 916, 1057, 1118, 1193
Bst6I	CTCTTC	2 cut(s)	769, 1230
BstBI	TTCGAA	2 cut(s)	198, 706
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	4 cut(s)	85, 189, 871, 1338
BstDSI	CCRYGG	2 cut(s)	590, 634
BstF5I	GGATG	3 cut(s)	181, 514, 795
BstFNI	CGCG	2 cut(s)	1441, 1570
BstHHI	GCGC	1 cut(s)	1443
BstKTI	GATC	5 cut(s)	451, 677, 894, 1390, 1462
BstMAI	GTCTC	1 cut(s)	1104
BstMBI	GATC	5 cut(s)	448, 674, 891, 1387, 1459
BstMWI	GCNNNNNNNGC	3 cut(s)	1421, 1517, 1576
BstNI	CCWGG	2 cut(s)	405, 1592
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	403, 1590
BstSFI	CTRYAG	2 cut(s)	972, 1580
BstUI	CGCG	2 cut(s)	1441, 1570
BstV1I	GCAGC	6 cut(s)	16, 244, 958, 1227, 1477, 1566
BstV2I	GAAGAC	2 cut(s)	589, 1571
BstXI	CCANNNNNNTGG	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	633, 864
BtgI	CCRYGG	2 cut(s)	590, 634
BtsCI	GGATG	3 cut(s)	181, 514, 795
BtsI	GCAGTG	2 cut(s)	83, 813
BtsIMutI	CAGTG	8 cut(s)	53, 83, 276, 372, 813, 879, 1007, 1198
Cac8I	GCNNGC	1 cut(s)	729
CfoI	GCGC	1 cut(s)	1443
Cfr13I	GGNCC	2 cut(s)	350, 631
CseI	GACGC	1 cut(s)	1576
Csp6I	GTAC	3 cut(s)	1044, 1125, 1189
CviAII	CATG	8 cut(s)	106, 539, 591, 635, 698, 889, 1069, 1078
CviQI	GTAC	3 cut(s)	1044, 1125, 1189
DdeI	CTNAG	4 cut(s)	85, 189, 871, 1338
DpnI	GATC	5 cut(s)	450, 676, 893, 1389, 1461
DpnII	GATC	5 cut(s)	448, 674, 891, 1387, 1459
Eam1104I	CTCTTC	2 cut(s)	769, 1230
EarI	CTCTTC	2 cut(s)	769, 1230
Eco130I	CCWWGG	3 cut(s)	590, 634, 796
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	4 cut(s)	48, 375, 888, 1583
EcoRII	CCWGG	2 cut(s)	403, 1590
EcoT14I	CCWWGG	3 cut(s)	590, 634, 796
ErhI	CCWWGG	3 cut(s)	590, 634, 796
FaeI	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	1 cut(s)	1132
FatI	CATG	8 cut(s)	105, 538, 590, 634, 697, 888, 1068, 1077
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	1459
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	6 cut(s)	5, 233, 972, 1241, 1466, 1580
FokI	GGATG	3 cut(s)	188, 521, 802
Fsp4HI	GCNGC	6 cut(s)	5, 233, 972, 1241, 1466, 1580
FspBI	CTAG	4 cut(s)	477, 741, 849, 1416
GlaI	GCGC	1 cut(s)	1442
GluI	GCNGC	6 cut(s)	5, 233, 972, 1241, 1466, 1580
GsaI	CCCAGC	2 cut(s)	1154, 1210
GsuI	CTGGAG	4 cut(s)	77, 248, 543, 1302
HaeIII	GGCC	2 cut(s)	633, 864
HgaI	GACGC	1 cut(s)	1576
HhaI	GCGC	1 cut(s)	1443
Hin1II	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
Hin6I	GCGC	1 cut(s)	1441
HinP1I	GCGC	1 cut(s)	1441
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	9 cut(s)	152, 179, 392, 752, 1036, 1309, 1324, 1379, 1429
HphI	GGTGA	4 cut(s)	476, 759, 935, 1043
Hpy166II	GTNNAC	2 cut(s)	342, 721
Hpy188I	TCNGA	7 cut(s)	401, 615, 670, 714, 751, 907, 1041
Hpy188III	TCNNGA	4 cut(s)	159, 288, 506, 1407
Hpy8I	GTNNAC	2 cut(s)	342, 721
HpyAV	CCTTC	5 cut(s)	205, 330, 350, 490, 854
HpyCH4III	ACNGT	5 cut(s)	367, 916, 1057, 1118, 1193
HpyCH4IV	ACGT	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1421, 1517, 1576
HpyF3I	CTNAG	4 cut(s)	85, 189, 871, 1338
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
HspAI	GCGC	1 cut(s)	1441
Ksp22I	TGATCA	1 cut(s)	1459
Kzo9I	GATC	5 cut(s)	448, 674, 891, 1387, 1459
LguI	GCTCTTC	1 cut(s)	1230
LmnI	GCTCC	3 cut(s)	58, 229, 1065
Lsp1109I	GCAGC	6 cut(s)	16, 244, 958, 1227, 1477, 1566
LweI	GCATC	3 cut(s)	90, 139, 780
MaeI	CTAG	4 cut(s)	477, 741, 849, 1416
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	3 cut(s)	361, 937, 1399
MalI	GATC	5 cut(s)	450, 676, 893, 1389, 1461
MboI	GATC	5 cut(s)	448, 674, 891, 1387, 1459
MfeI	CAATTG	1 cut(s)	1383
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	6 cut(s)	13, 114, 252, 282, 1014, 1383
MlyI	GAGTC	3 cut(s)	401, 746, 1318
MmeI	TCCRAC	2 cut(s)	1253, 1455
MnlI	CCTC	8 cut(s)	339, 597, 780, 794, 1022, 1338, 1347, 1510
MseI	TTAA	3 cut(s)	245, 600, 836
MspR9I	CCNGG	2 cut(s)	405, 1592
MunI	CAATTG	1 cut(s)	1383
Mva1269I	GAATGC	2 cut(s)	49, 1087
MvaI	CCWGG	2 cut(s)	405, 1592
MvnI	CGCG	2 cut(s)	1441, 1570
MwoI	GCNNNNNNNGC	3 cut(s)	1421, 1517, 1576
NcoI	CCATGG	2 cut(s)	590, 634
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	5 cut(s)	448, 674, 891, 1387, 1459
NlaIII	CATG	8 cut(s)	109, 542, 594, 638, 701, 892, 1072, 1081
NlaIV	GGNNCC	3 cut(s)	60, 632, 1479
NmuCI	GTSAC	2 cut(s)	361, 1399
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	2 cut(s)	198, 706
PciI	ACATGT	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	1230
PctI	GAATGC	2 cut(s)	49, 1087
PfeI	GAWTC	6 cut(s)	152, 179, 1036, 1309, 1379, 1429
PflMI	CCANNNNNTGG	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	1590
PkrI	GCNGC	6 cut(s)	6, 234, 973, 1242, 1467, 1581
PleI	GAGTC	3 cut(s)	400, 746, 1318
PpsI	GAGTC	3 cut(s)	400, 746, 1318
PscI	ACATGT	1 cut(s)	697
Psp6I	CCWGG	2 cut(s)	403, 1590
PspFI	CCCAGC	2 cut(s)	1150, 1206
PspGI	CCWGG	2 cut(s)	403, 1590
PspN4I	GGNNCC	3 cut(s)	60, 632, 1479
PspPI	GGNCC	2 cut(s)	350, 631
PsrI	GAACNNNNNNTAC	2 cut(s)	254, 286
PstI	CTGCAG	2 cut(s)	976, 1584
RsaI	GTAC	3 cut(s)	1045, 1126, 1190
RsaNI	GTAC	3 cut(s)	1044, 1125, 1189
SapI	GCTCTTC	1 cut(s)	1230
SaqAI	TTAA	3 cut(s)	245, 600, 836
SatI	GCNGC	6 cut(s)	5, 233, 972, 1241, 1466, 1580
Sau3AI	GATC	5 cut(s)	448, 674, 891, 1387, 1459
Sau96I	GGNCC	2 cut(s)	350, 631
ScaI	AGTACT	1 cut(s)	1045
SchI	GAGTC	3 cut(s)	401, 746, 1318
ScrFI	CCNGG	2 cut(s)	405, 1592
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	90, 139, 780
SfcI	CTRYAG	2 cut(s)	972, 1580
SfuI	TTCGAA	2 cut(s)	198, 706
SinI	GGWCC	1 cut(s)	350
Sse9I	AATT	6 cut(s)	13, 114, 252, 282, 1014, 1383
SspMI	CTAG	4 cut(s)	477, 741, 849, 1416
StyD4I	CCNGG	2 cut(s)	403, 1590
StyI	CCWWGG	3 cut(s)	590, 634, 796
TaaI	ACNGT	5 cut(s)	367, 916, 1057, 1118, 1193
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	5 cut(s)	198, 485, 706, 894, 1330
TasI	AATT	6 cut(s)	13, 114, 252, 282, 1014, 1383
TatI	WGTACW	2 cut(s)	1043, 1188
TfiI	GAWTC	6 cut(s)	152, 179, 1036, 1309, 1379, 1429
Tru1I	TTAA	3 cut(s)	245, 600, 836
Tru9I	TTAA	3 cut(s)	245, 600, 836
TscAI	CASTG	8 cut(s)	60, 83, 283, 372, 813, 879, 1014, 1198
TseFI	GTSAC	2 cut(s)	361, 1399
TseI	GCWGC	6 cut(s)	4, 232, 971, 1240, 1465, 1579
Tsp45I	GTSAC	2 cut(s)	361, 1399
TspGWI	ACGGA	2 cut(s)	621, 1560
TspRI	CASTG	8 cut(s)	60, 83, 283, 372, 813, 879, 1014, 1198
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	282, 1014
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	720
XspI	CTAG	4 cut(s)	477, 741, 849, 1416
ZrmI	AGTACT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.