Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035140.1

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1688

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035140.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 815 bp

atgcagttgatagacaagaaccccagcaaggccatatccctcttttgggctgctataaacgccggagatcgagttggtagtgcattgaaagacatggcggtggtcatgaaacaactggatcgagcagaagaggcgattgaagcgattaaatcctttcgccatctctgcccctatgagtctcaggagtctcttaacaatgtgctggtggaattgtacaagagggcaggaaggattgaagatgagattgaaatgcttcagtccaaactgaaacgtatggatgaaggtatagcctttagcggaaagaggacaaagactgcgagagctcaggggaagaaggttcaaattactgttgaacaggagagatccagagtactaggaaacttggcatgggcttacatgcagcaaggcaattacacaactgctgaagaacattacaagaatgctctggcactggagccagataagaacaagcagtgcaacttagcagtctgcttgatgcacatgaacagaattatagaagcaaggcatctgcttcaagctgtaagagattcatctggaaataaaccaatggatgaatcttatgctaagtccttcgaacgtgcttttgaaatgctgactgaactggagcagcaatcagttttaagaccaattcaacaaaacgacaactactgcactggaatttcaagaacacccaaagattttgtttctggttatatgcctatgcctcccagaaggtggacagatggacctgaaggtgtgacagtgatagcgaatgaacagcatagagagtcattcagacctggaagttgtgcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

271

Amino Acids

30.82

Weight (kDa)

8.2

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	735
AciI	CCGC	2 cut(s)	98, 297
AclWI	GGATC	2 cut(s)	126, 357
AcsI	RAATTY	1 cut(s)	678
AcuI	CTGAAG	3 cut(s)	239, 444, 771
AfaI	GTAC	2 cut(s)	215, 372
AfiI	CCNNNNNNNGG	4 cut(s)	28, 45, 46, 735
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	2 cut(s)	323, 539
AluI	AGCT	2 cut(s)	323, 539
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	183, 192
AlwI	GGATC	2 cut(s)	126, 357
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	50, 400, 628
ApoI	RAATTY	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	746
AsuII	TTCGAA	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	37, 412, 640
BccI	CCATC	2 cut(s)	168, 737
BciT130I	CCWGG	1 cut(s)	801
BcoDI	GTCTC	2 cut(s)	183, 192
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	3 cut(s)	51, 401, 629
BlsI	GCNGC	3 cut(s)	52, 402, 630
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	801
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	486, 535
BpmI	CTGGAG	2 cut(s)	473, 644
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	594
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 45, 46, 735
Bse1I	ACTGG	4 cut(s)	120, 456, 627, 679
BseBI	CCWGG	1 cut(s)	801
BseGI	GGATG	2 cut(s)	283, 577
BseLI	CCNNNNNNNGG	4 cut(s)	28, 45, 46, 735
BseMII	CTCAG	2 cut(s)	194, 338
BseNI	ACTGG	4 cut(s)	120, 456, 627, 679
BseXI	GCAGC	3 cut(s)	37, 412, 640
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	655
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	4 cut(s)	28, 45, 46, 735
BsmAI	GTCTC	2 cut(s)	183, 192
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	67, 118, 362
BspACI	CCGC	2 cut(s)	98, 297
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	193, 337
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	126, 357
BspT104I	TTCGAA	1 cut(s)	594
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	4 cut(s)	120, 456, 627, 679
BssMI	GATC	3 cut(s)	67, 118, 362
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	2 cut(s)	349, 763
Bst6I	CTCTTC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	594
BstDEI	CTNAG	4 cut(s)	180, 324, 481, 585
BstF5I	GGATG	2 cut(s)	283, 577
BstKTI	GATC	3 cut(s)	70, 121, 365
BstMAI	GTCTC	2 cut(s)	183, 192
BstMBI	GATC	3 cut(s)	67, 118, 362
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 131, 140, 165
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	799
BstV1I	GCAGC	3 cut(s)	37, 412, 640
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	283, 577
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	4 cut(s)	449, 479, 672, 768
CciI	TCATGA	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	746
Csp6I	GTAC	2 cut(s)	214, 371
CviAII	CATG	5 cut(s)	94, 106, 387, 397, 502
CviJI	RGCY	7 cut(s)	32, 50, 290, 323, 392, 457, 539
CviKI_1	RGCY	7 cut(s)	32, 50, 290, 323, 392, 457, 539
CviQI	GTAC	2 cut(s)	214, 371
DdeI	CTNAG	4 cut(s)	180, 324, 481, 585
DpnI	GATC	3 cut(s)	69, 120, 364
DpnII	GATC	3 cut(s)	67, 118, 362
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	3 cut(s)	239, 444, 771
EcoICRI	GAGCTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	5 cut(s)	97, 109, 390, 400, 505
FatI	CATG	5 cut(s)	93, 105, 386, 396, 501
Fnu4HI	GCNGC	3 cut(s)	51, 401, 629
FokI	GGATG	2 cut(s)	290, 584
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	3 cut(s)	51, 401, 629
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	3 cut(s)	51, 401, 629
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	2 cut(s)	473, 644
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	5 cut(s)	97, 109, 390, 400, 505
HinfI	GANTC	5 cut(s)	176, 185, 548, 575, 788
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	738
Hpy188I	TCNGA	1 cut(s)	797
Hpy188III	TCNNGA	5 cut(s)	106, 182, 366, 555, 684
Hpy8I	GTNNAC	1 cut(s)	738
HpyAV	CCTTC	6 cut(s)	222, 275, 328, 601, 726, 746
HpyCH4III	ACNGT	2 cut(s)	349, 763
HpyCH4IV	ACGT	2 cut(s)	271, 598
HpyCH4V	TGCA	7 cut(s)	4, 83, 400, 477, 499, 672, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 131, 140, 165
HpyF3I	CTNAG	4 cut(s)	180, 324, 481, 585
HpySE526I	ACGT	2 cut(s)	271, 598
Hsp92II	CATG	5 cut(s)	97, 109, 390, 400, 505
Kzo9I	GATC	3 cut(s)	67, 118, 362
LmnI	GCTCC	2 cut(s)	454, 625
Lsp1109I	GCAGC	3 cut(s)	37, 412, 640
LweI	GCATC	2 cut(s)	486, 535
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	271, 598
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	3 cut(s)	69, 120, 364
MboI	GATC	3 cut(s)	67, 118, 362
MboII	GAAGA	4 cut(s)	140, 248, 343, 437
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	6 cut(s)	209, 342, 409, 510, 648, 678
MlyI	GAGTC	3 cut(s)	185, 194, 797
MnlI	CCTC	5 cut(s)	50, 124, 213, 297, 735
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	3 cut(s)	147, 192, 641
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	801
MwoI	GCNNNNNNNGC	4 cut(s)	59, 131, 140, 165
NdeII	GATC	3 cut(s)	67, 118, 362
NlaIII	CATG	5 cut(s)	97, 109, 390, 400, 505
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	757
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	594
PagI	TCATGA	1 cut(s)	105
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	548, 575
PflMI	CCANNNNNTGG	1 cut(s)	735
PkrI	GCNGC	3 cut(s)	52, 402, 630
PleI	GAGTC	3 cut(s)	184, 193, 796
PpsI	GAGTC	3 cut(s)	184, 193, 796
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	799
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	2 cut(s)	215, 372
RsaNI	GTAC	2 cut(s)	214, 371
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	147, 192, 641
SatI	GCNGC	3 cut(s)	51, 401, 629
Sau3AI	GATC	3 cut(s)	67, 118, 362
Sau96I	GGNCC	1 cut(s)	746
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	3 cut(s)	185, 194, 797
ScrFI	CCNGG	1 cut(s)	801
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	486, 535
SfuI	TTCGAA	1 cut(s)	594
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	6 cut(s)	209, 342, 409, 510, 648, 678
SsiI	CCGC	2 cut(s)	98, 297
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	349, 763
TaiI	ACGT	2 cut(s)	274, 601
TaqI	TCGA	3 cut(s)	70, 121, 594
TasI	AATT	6 cut(s)	209, 342, 409, 510, 648, 678
TatI	WGTACW	2 cut(s)	213, 370
TfiI	GAWTC	2 cut(s)	548, 575
Tru1I	TTAA	3 cut(s)	147, 192, 641
Tru9I	TTAA	3 cut(s)	147, 192, 641
TscAI	CASTG	4 cut(s)	456, 479, 679, 768
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	3 cut(s)	50, 400, 628
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	6 cut(s)	122, 294, 518, 540, 588, 789
TspRI	CASTG	4 cut(s)	456, 479, 679, 768
Van91I	CCANNNNNTGG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	678
XceI	RCATGY	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	374
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.