Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Forward (+)

11910018 .. 11913741

Gene Structure 3724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTGGGCCAGAGACCGGAGCTTTCAACCGGCCGGGTTCTTCACGCCGCCGCCGCCGCGGAAGTCAGGGCCGGCGAATCCTCCTCCGATGGTGCCCATGTCGGAGAGGAAGAGAGTCTCGCCGGCGGCAAGGTGTGATCTTTTTCACGTTGCGCATAAAGTCCCCGCCGGCGACTCGCCGTACGTCAGAGCCAAACAAGTTCAATTGATAGACAAGAACCCCAGCAAGGCCATATCCCTCTTTTGGGCTGCTATAAACGCCGGAGATCGAGTTGGTAGTGCATTGAAAGACATGGCGGTGGTCATGAAACAACTGGATCGAGCAGAAGAGGCGATTGAAGCGATTAAATCCTTTCGCCATCTCTGCCCCTATGAGTCTCAGGAGTCTCTTAACAATGTGCTGGTGGAATTGTACAAGAGGGCAGGAAGGATTGAAGATGAGATTGAAATGCTTCAGTCCAAACTGAAACGTATGGATGAAGGTATAGCCTTTAGCGGAAAGAGGACAAAGACTGCGAGAGCTCAGGGGAAGAAGGTTCAAATTACTGTTGAACAGGAGAGATCAAGAGTACTAGGAAACTTGGCATGGGCTTACATGCAGCAAGGCAATTTCACAACTGCTGAAGAACATTACAAGAATGCTCTGGCACTGGAGCCAGATAAGAACAAGCAGTGCAACTTAGCAGTCTGCTTGATGCACATGAACAGAATTATAGAAGCAAGGCATCTGCTTCAAGCTGTAAGAGATTCATCTGGAAATAAACCAATGGATGAATCTTATGCTAAGTCCTTCGAACGTGCTTTTGAAATGCTGACTGAACTGGAGCAGCAATCAGTTTTAAGACCAATTCAACAGAACGAGAACTACTGCACTGGAATTTCAAGAACACCCAAAGATTTTGTTTCTGGTTATATGCCTATGCCTCCCAGAAGGTGGACAGATGGACCTGAAGGTGTGACAGTGATAGCGAATGAACAGCATAGAGAGTCATTCAGACCTGGAAGTTGTGCAAAGTCTTTTGATAAATGGAAGAAAGATTATGATCTAAAAAACACAGGTGATAGCAGACCTAGTTTTTCGAGCAAAATGAAGGAAAATCAGGATGGTTTGATAGGAACAGAAGTAAATCTACATGAAAAAACATATGCTTCTCCAGTTCTATATACACAACCAAGAAGACCTCCATGGGGATTTAATGACGGACATCAGAGAAGTGAGATATGGGGCCATGGTGTTGGCAGTTCAAATAAAAAGCTTCCATCTGAAAGATCAACAGGAAATGTTAGAGCTCATGTTGTTCGAAATCTGAATGTAGACTTGCTTGCTTCAACTACTAGAAAGTCAGAGTCTACTCTGTCTTCACCAAGTCGCAGAGATTGGAGGATGCCCCAAGGAGGTGCAGTGGCAAGACCTGTTTTACAACCTATATTAAGTATGACTTCTAGGGGGAATGAAGGCCATCTCTCAGTGAGAAATGAAGCCATGATCGACCATTCTTCAGAGCATACAGTAAATGGTGATAGAAGATGGGTTACTTGGGATAAAGATGGTATGAAGAAATCTGCTGCAGAACCACAAATGGTTGATGAAAATGCAAAAGCACTGGAAATTTCTACTGATGGAGGTGAGAATCAGAGTACTGACAAAACTGTTTCAAGGAGCATGGAAAACATGAATGCTTCTGTGGAAGAAGATTGCTTGGGAGACAACAGTTCTGGTACATTGGATAATGTCCATCAGTCCCCAGCAGATAATGAAAAGCCAACCCCTGATTTTTGGAAGTACAGTGGTAAGAAAAGCTGGGCAGATATGGTGGAAGAAGAAGAAGAAGAAGAGCTGCGAAGTGGAAGAACTGGGTATTTTGATAGTTGGAATACTGGAGATGAGTTTGATGATGAAAACAGGAATCCCAACACAATGACTCCTCGAAGTCCTCAGTTTCAAACTCAAATAAAGGATTTGAGCAAAAAGGCTGAATCAATTGATCTAAAAGGTGTGACATCTGGAAATGCTAGTTCAGCAAGGAATCCTACCACGCGCCGTTCTTTGGTTTTTGATCAGCAGCAGGAGTTGGAATCAGTAGATTACATCAGTTCATCTCCTGTTGCAAAGGAGGCTTTGAATGGAAATGACTCTATTTACGGAAAGAACTTGAAACTGAAGACGCGAAACAGGCTGCAGAGTTTCCAGGATATAACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

734

Amino Acids

82.6

Weight (kDa)

7.99

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	189 - 220	5.4e-08	Tetratricopeptide repeat
TPR_2	PF07719	190 - 220	1.4e-06	Tetratricopeptide repeat
TPR_19	PF14559	199 - 250	3.2e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	933
AccI	GTMKAC	2 cut(s)	1314, 1349
AccII	CGCG	3 cut(s)	58, 2038, 2167
AciI	CCGC	9 cut(s)	47, 50, 53, 56, 58, 125, 165, 296, 495
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	876, 1608
AcuI	CTGAAG	5 cut(s)	437, 642, 969, 1482, 2180
AfaI	GTAC	6 cut(s)	182, 413, 570, 1639, 1720, 1784
AfiI	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2047
AjnI	CCWGG	2 cut(s)	997, 2187
AluBI	AGCT	7 cut(s)	21, 521, 737, 1255, 1289, 1800, 1837
AluI	AGCT	7 cut(s)	21, 521, 737, 1255, 1289, 1800, 1837
Alw21I	GWGCWC	2 cut(s)	523, 1291
Alw26I	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	6 cut(s)	6, 30, 68, 228, 1225, 1456
ApeKI	GCWGC	7 cut(s)	248, 598, 826, 1565, 1837, 2062, 2176
ApoI	RAATTY	2 cut(s)	876, 1608
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	2 cut(s)	154, 2040
AspS9I	GGNCC	4 cut(s)	6, 68, 944, 1225
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	1070, 1353, 1529, 1637
AsuII	TTCGAA	2 cut(s)	792, 1300
AvaII	GGWCC	1 cut(s)	944
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	91
BanII	GRGCYC	2 cut(s)	523, 1291
BarI	GAAGNNNNNNTAC	4 cut(s)	1113, 1145, 1516, 1548
BbsI	GAAGAC	3 cut(s)	1183, 1350, 2168
Bbv12I	GWGCWC	2 cut(s)	523, 1291
BbvI	GCAGC	7 cut(s)	235, 610, 838, 1552, 1824, 2074, 2163
BceAI	ACGGC	2 cut(s)	163, 2025
BciT130I	CCWGG	2 cut(s)	999, 2189
BclI	TGATCA	1 cut(s)	2056
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
BfaI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 2013
BfmI	CTRYAG	2 cut(s)	1566, 2177
BmcAI	AGTACT	2 cut(s)	570, 1639
Bme1390I	CCNGG	3 cut(s)	34, 999, 2189
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	4 cut(s)	6, 68, 944, 1225
BmiI	GGNNCC	3 cut(s)	93, 654, 1226
BmrFI	CCNGG	3 cut(s)	34, 999, 2189
BmrI	ACTGGG	1 cut(s)	1863
BmsI	GCATC	3 cut(s)	684, 733, 1374
BmuI	ACTGGG	1 cut(s)	1863
BpiI	GAAGAC	3 cut(s)	1183, 1350, 2168
BpmI	CTGGAG	4 cut(s)	671, 842, 1137, 1899
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	2 cut(s)	792, 1300
BpuMI	CCSGG	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaI	GGTCTC	1 cut(s)	6
BsaJI	CCNNGG	4 cut(s)	56, 1184, 1228, 1390
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	6 cut(s)	255, 285, 1386, 1416, 1906, 1936
Bsc4I	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2047
Bse118I	RCCGGY	4 cut(s)	28, 70, 121, 167
Bse1I	ACTGG	8 cut(s)	318, 654, 825, 877, 1154, 1608, 1858, 1882
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	2 cut(s)	999, 2189
BseDI	CCNNGG	4 cut(s)	56, 1184, 1228, 1390
BseGI	GGATG	4 cut(s)	481, 775, 1108, 1389
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2047
BseMII	CTCAG	4 cut(s)	392, 536, 1479, 1949
BseNI	ACTGG	8 cut(s)	318, 654, 825, 877, 1154, 1608, 1858, 1882
BseRI	GAGGAG	2 cut(s)	72, 1914
BseSI	GKGCMC	1 cut(s)	96
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	7 cut(s)	235, 610, 838, 1552, 1824, 2074, 2163
BseYI	CCCAGC	3 cut(s)	221, 1744, 1800
BsgI	GTGCAG	2 cut(s)	853, 1419
Bsh1236I	CGCG	3 cut(s)	58, 2038, 2167
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	6 cut(s)	8, 32, 70, 230, 1227, 1458
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	523, 1291
BsiSI	CCGG	7 cut(s)	16, 29, 33, 71, 122, 168, 261
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	146, 1726
BslI	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2047
BsmAI	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
BsmFI	GGGAC	2 cut(s)	146, 1726
BsmI	GAATGC	2 cut(s)	643, 1681
BsnI	GGCC	6 cut(s)	8, 32, 70, 230, 1227, 1458
Bso31I	GGTCTC	1 cut(s)	6
Bsp119I	TTCGAA	2 cut(s)	792, 1300
Bsp1286I	GDGCHC	3 cut(s)	96, 523, 1291
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
Bsp19I	CCATGG	2 cut(s)	1184, 1228
BspACI	CCGC	9 cut(s)	47, 50, 53, 56, 58, 125, 165, 296, 495
BspANI	GGCC	6 cut(s)	8, 32, 70, 230, 1227, 1458
BspCNI	CTCAG	4 cut(s)	391, 535, 1478, 1948
BspFNI	CGCG	3 cut(s)	58, 2038, 2167
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	93, 654, 1226
BspMAI	CTGCAG	2 cut(s)	1570, 2181
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	1827
BspT104I	TTCGAA	2 cut(s)	792, 1300
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	6
BsrFI	RCCGGY	4 cut(s)	28, 70, 121, 167
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	8 cut(s)	318, 654, 825, 877, 1154, 1608, 1858, 1882
BssAI	RCCGGY	4 cut(s)	28, 70, 121, 167
BssECI	CCNNGG	4 cut(s)	56, 1184, 1228, 1390
BssMI	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
BssT1I	CCWWGG	3 cut(s)	1184, 1228, 1390
Bst2UI	CCWGG	2 cut(s)	999, 2189
Bst4CI	ACNGT	6 cut(s)	547, 961, 1510, 1651, 1712, 1787
Bst6I	CTCTTC	3 cut(s)	104, 321, 1827
BstAUI	TGTACA	1 cut(s)	411
BstBI	TTCGAA	2 cut(s)	792, 1300
BstC8I	GCNNGC	4 cut(s)	72, 123, 169, 1323
BstDEI	CTNAG	6 cut(s)	378, 522, 679, 783, 1465, 1935
BstDSI	CCRYGG	3 cut(s)	56, 1184, 1228
BstF5I	GGATG	4 cut(s)	481, 775, 1108, 1389
BstFNI	CGCG	3 cut(s)	58, 2038, 2167
BstHHI	GCGC	2 cut(s)	154, 2040
BstKTI	GATC	9 cut(s)	139, 268, 319, 563, 1045, 1271, 1488, 1987, 2059
BstMAI	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
BstMBI	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 55, 257, 329, 338, 363, 2018, 2114, 2173
BstNI	CCWGG	2 cut(s)	999, 2189
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	32, 997, 2187
BstSFI	CTRYAG	2 cut(s)	1566, 2177
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	3 cut(s)	58, 2038, 2167
BstV1I	GCAGC	7 cut(s)	235, 610, 838, 1552, 1824, 2074, 2163
BstV2I	GAAGAC	3 cut(s)	1183, 1350, 2168
BstXI	CCANNNNNNTGG	1 cut(s)	1235
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	6 cut(s)	8, 32, 70, 230, 1227, 1458
BtgI	CCRYGG	3 cut(s)	56, 1184, 1228
BtsCI	GGATG	4 cut(s)	481, 775, 1108, 1389
BtsI	GCAGTG	2 cut(s)	677, 1407
BtsIMutI	CAGTG	8 cut(s)	647, 677, 870, 966, 1407, 1473, 1601, 1792
Cac8I	GCNNGC	4 cut(s)	72, 123, 169, 1323
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	2 cut(s)	154, 2040
Cfr10I	RCCGGY	4 cut(s)	28, 70, 121, 167
Cfr13I	GGNCC	4 cut(s)	6, 68, 944, 1225
Cfr42I	CCGCGG	1 cut(s)	59
CseI	GACGC	1 cut(s)	2173
Csp6I	GTAC	6 cut(s)	181, 412, 569, 1638, 1719, 1783
CviQI	GTAC	6 cut(s)	181, 412, 569, 1638, 1719, 1783
DdeI	CTNAG	6 cut(s)	378, 522, 679, 783, 1465, 1935
DpnI	GATC	9 cut(s)	138, 267, 318, 562, 1044, 1270, 1487, 1986, 2058
DpnII	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	3 cut(s)	104, 321, 1827
EarI	CTCTTC	3 cut(s)	104, 321, 1827
Ecl136II	GAGCTC	2 cut(s)	521, 1289
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	1184, 1228, 1390
Eco24I	GRGCYC	2 cut(s)	523, 1291
Eco31I	GGTCTC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	944
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	2 cut(s)	521, 1289
Eco57I	CTGAAG	5 cut(s)	437, 642, 969, 1482, 2180
EcoICRI	GAGCTC	2 cut(s)	521, 1289
EcoRII	CCWGG	2 cut(s)	997, 2187
EcoT14I	CCWWGG	3 cut(s)	1184, 1228, 1390
EcoT38I	GRGCYC	2 cut(s)	523, 1291
ErhI	CCWWGG	3 cut(s)	1184, 1228, 1390
FalI	AAGNNNNNCTT	2 cut(s)	1423, 1455
FaqI	GGGAC	2 cut(s)	146, 1726
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	1144
FbaI	TGATCA	1 cut(s)	2056
FblI	GTMKAC	2 cut(s)	1314, 1349
FokI	GGATG	4 cut(s)	488, 782, 1115, 1396
FriOI	GRGCYC	2 cut(s)	523, 1291
FspBI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 2013
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	2 cut(s)	153, 2039
GsaI	CCCAGC	3 cut(s)	225, 1748, 1804
GsuI	CTGGAG	4 cut(s)	671, 842, 1137, 1899
HaeIII	GGCC	6 cut(s)	8, 32, 70, 230, 1227, 1458
HapII	CCGG	7 cut(s)	16, 29, 33, 71, 122, 168, 261
HgaI	GACGC	1 cut(s)	2173
HhaI	GCGC	2 cut(s)	154, 2040
Hin6I	GCGC	2 cut(s)	152, 2038
HinP1I	GCGC	2 cut(s)	152, 2038
HindIII	AAGCTT	1 cut(s)	1253
HpaII	CCGG	7 cut(s)	16, 29, 33, 71, 122, 168, 261
HphI	GGTGA	4 cut(s)	1070, 1353, 1529, 1637
Hpy166II	GTNNAC	3 cut(s)	936, 1315, 1350
Hpy188III	TCNNGA	7 cut(s)	304, 380, 564, 753, 882, 1100, 2004
Hpy8I	GTNNAC	3 cut(s)	936, 1315, 1350
HpyAV	CCTTC	8 cut(s)	420, 473, 526, 799, 924, 944, 1084, 1448
HpyCH4III	ACNGT	6 cut(s)	547, 961, 1510, 1651, 1712, 1787
HpyCH4IV	ACGT	4 cut(s)	147, 183, 469, 796
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 55, 257, 329, 338, 363, 2018, 2114, 2173
HpyF3I	CTNAG	6 cut(s)	378, 522, 679, 783, 1465, 1935
HpySE526I	ACGT	4 cut(s)	147, 183, 469, 796
HspAI	GCGC	2 cut(s)	152, 2038
KroI	GCCGGC	3 cut(s)	70, 121, 167
KroNI	GCCGGC	3 cut(s)	72, 123, 169
Ksp22I	TGATCA	1 cut(s)	2056
KspI	CCGCGG	1 cut(s)	59
Kzo9I	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
LguI	GCTCTTC	1 cut(s)	1827
LmnI	GCTCC	4 cut(s)	18, 652, 823, 1659
Lsp1109I	GCAGC	7 cut(s)	235, 610, 838, 1552, 1824, 2074, 2163
LweI	GCATC	3 cut(s)	684, 733, 1374
MaeI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 2013
MaeII	ACGT	4 cut(s)	147, 183, 469, 796
MaeIII	GTNAC	3 cut(s)	955, 1531, 1996
MalI	GATC	9 cut(s)	138, 267, 318, 562, 1044, 1270, 1487, 1986, 2058
MboI	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
MfeI	CAATTG	2 cut(s)	203, 1980
MhlI	GDGCHC	3 cut(s)	96, 523, 1291
MluCI	AATT	9 cut(s)	203, 407, 540, 607, 708, 846, 876, 1608, 1980
MlyI	GAGTC	8 cut(s)	123, 167, 383, 392, 995, 1355, 1915, 2126
MmeI	TCCRAC	3 cut(s)	81, 1850, 2052
MreI	CGCCGGCG	2 cut(s)	121, 167
MroNI	GCCGGC	3 cut(s)	70, 121, 167
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	5 cut(s)	345, 390, 839, 1194, 1430
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	7 cut(s)	16, 29, 33, 71, 122, 168, 261
MspR9I	CCNGG	3 cut(s)	34, 999, 2189
MunI	CAATTG	2 cut(s)	203, 1980
Mva1269I	GAATGC	2 cut(s)	643, 1681
MvaI	CCWGG	2 cut(s)	999, 2189
MvnI	CGCG	3 cut(s)	58, 2038, 2167
MwoI	GCNNNNNNNGC	9 cut(s)	52, 55, 257, 329, 338, 363, 2018, 2114, 2173
NaeI	GCCGGC	3 cut(s)	72, 123, 169
NciI	CCSGG	1 cut(s)	34
NcoI	CCATGG	2 cut(s)	1184, 1228
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
NgoMIV	GCCGGC	3 cut(s)	70, 121, 167
NlaIV	GGNNCC	3 cut(s)	93, 654, 1226
NmuCI	GTSAC	2 cut(s)	955, 1996
NsbI	TGCGCA	1 cut(s)	153
NspI	RCATGY	1 cut(s)	598
NspV	TTCGAA	2 cut(s)	792, 1300
PagI	TCATGA	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	1827
PctI	GAATGC	2 cut(s)	643, 1681
PdiI	GCCGGC	3 cut(s)	72, 123, 169
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	8 cut(s)	76, 746, 773, 1630, 1906, 1976, 2026, 2075
Pfl23II	CGTACG	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	933
PfoI	TCCNGGA	1 cut(s)	2187
PleI	GAGTC	8 cut(s)	122, 167, 382, 391, 994, 1354, 1915, 2126
PpsI	GAGTC	8 cut(s)	122, 167, 382, 391, 994, 1354, 1915, 2126
Psp124BI	GAGCTC	2 cut(s)	523, 1291
Psp6I	CCWGG	2 cut(s)	997, 2187
PspFI	CCCAGC	3 cut(s)	221, 1744, 1800
PspGI	CCWGG	2 cut(s)	997, 2187
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	93, 654, 1226
PspPI	GGNCC	4 cut(s)	6, 68, 944, 1225
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PstI	CTGCAG	2 cut(s)	1570, 2181
RsaI	GTAC	6 cut(s)	182, 413, 570, 1639, 1720, 1784
RsaNI	GTAC	6 cut(s)	181, 412, 569, 1638, 1719, 1783
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	2 cut(s)	523, 1291
SacII	CCGCGG	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	1827
SaqAI	TTAA	5 cut(s)	345, 390, 839, 1194, 1430
Sau3AI	GATC	9 cut(s)	136, 265, 316, 560, 1042, 1268, 1485, 1984, 2056
Sau96I	GGNCC	4 cut(s)	6, 68, 944, 1225
ScaI	AGTACT	2 cut(s)	570, 1639
SchI	GAGTC	8 cut(s)	123, 167, 383, 392, 995, 1355, 1915, 2126
ScrFI	CCNGG	3 cut(s)	34, 999, 2189
SduI	GDGCHC	3 cut(s)	96, 523, 1291
SfaNI	GCATC	3 cut(s)	684, 733, 1374
SfcI	CTRYAG	2 cut(s)	1566, 2177
Sfr303I	CCGCGG	1 cut(s)	59
SfuI	TTCGAA	2 cut(s)	792, 1300
SgrAI	CRCCGGYG	2 cut(s)	121, 167
SgrBI	CCGCGG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	9 cut(s)	203, 407, 540, 607, 708, 846, 876, 1608, 1980
SsiI	CCGC	9 cut(s)	47, 50, 53, 56, 58, 125, 165, 296, 495
SspMI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 2013
SstI	GAGCTC	2 cut(s)	523, 1291
StyD4I	CCNGG	3 cut(s)	32, 997, 2187
StyI	CCWWGG	3 cut(s)	1184, 1228, 1390
TaaI	ACNGT	6 cut(s)	547, 961, 1510, 1651, 1712, 1787
TaiI	ACGT	4 cut(s)	150, 186, 472, 799
TaqI	TCGA	7 cut(s)	268, 319, 792, 1079, 1300, 1488, 1927
TasI	AATT	9 cut(s)	203, 407, 540, 607, 708, 846, 876, 1608, 1980
TatI	WGTACW	4 cut(s)	411, 568, 1637, 1782
TauI	GCSGC	5 cut(s)	49, 52, 55, 58, 128
TfiI	GAWTC	8 cut(s)	76, 746, 773, 1630, 1906, 1976, 2026, 2075
Tru1I	TTAA	5 cut(s)	345, 390, 839, 1194, 1430
Tru9I	TTAA	5 cut(s)	345, 390, 839, 1194, 1430
TscAI	CASTG	8 cut(s)	654, 677, 877, 966, 1407, 1473, 1608, 1792
TseFI	GTSAC	2 cut(s)	955, 1996
TseI	GCWGC	7 cut(s)	248, 598, 826, 1565, 1837, 2062, 2176
Tsp45I	GTSAC	2 cut(s)	955, 1996
TspGWI	ACGGA	2 cut(s)	1215, 2157
TspRI	CASTG	8 cut(s)	654, 677, 877, 966, 1407, 1473, 1608, 1792
Van91I	CCANNNNNTGG	1 cut(s)	933
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	2 cut(s)	876, 1608
XceI	RCATGY	1 cut(s)	598
XmiI	GTMKAC	2 cut(s)	1314, 1349
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 2013
ZrmI	AGTACT	2 cut(s)	570, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.