Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Forward (+)

12644816 .. 12648536

Gene Structure 3721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGTGGGCCAGAGACAGGAGCTTTCAACCGGCCGGGTTCTTCACGCCGCCGCCGCCACGGAAGTCAGGGCCGGCGAACCCTCCTCCGATGGCGCCCATGTCGGAGAGGAAGAGAGTCTCGCCGGCGGCAAGGTGTGAACTTTTTCACGTTGCGCATAAAGTTCCCGCCGGCGACTCGCCGTACGTCAGAGCCAAACAAGTTCAATTGATAGACAAGAACCCCAGCAAGGCCATATCCCTCTTTTGGGCTGCTATAAACGCTGGAGATCGAGTTGATAGTGCATTGAAAGACATGGCGGTGGTCATGAAACAACTGGATCGAGCTGAAGAGGCGATTGAAGCTATTAAATCCTTTCGCCATCTCTGTCCTTATGAGTCTCAGGAGTCTCTTAACAATGTGCTGGTGGAATTGTACAAGAGGGCAGGAAGGATTGAAGATGAGATTGAAATGCTTCAGTCCAAACTGAAACGTATGGATGAAGGTATAGCCTTTAGTGGAAAGAGGACAAAGACTGCAAGAGCTCAGGGGAAGAAGGTTCAAATTACTTTTGAACAGGAGAGATCAAGAGTACTAGGAAACTTGGCATGGGCTTACATGCAGCAAGGCAATCACACAACTGCCGAAGAACATTACAAGAATGCTCTGGCACTGGAGCCAGATAAGAACAAGCAGTGCAACTTAGCAGTCTGCTTGATGCACATGAACAGAATTATAGAAGCAAGGCATCTGCTTCAAGCTGTAAGAGATTCATCTGGAAATAAACCAATGGATGAATCTTATGCTAAGTCCTTCGAACGTGCTTTTGAAATGCTGACTGAACTGGAGCAGCAATCAGTTTTAAGACCAATTCAACAGAACGAGAACTACTGCACTGGAATTTCAAGAACACCCAAAGATTTTGTTTCTGGTTATATGCCTATGCCTCCCAGAAGGTGGACAGATGGACCTGAAGGTGTGACAGTGATAGCGAATGAACAGCATAGAGAGTCATTCAGACCTGGAACTTGTGCAAAGTCTTTTGATAAATGGAAGAAAGATTATGATCTCAAAAACACAGGTGATAGCAGGCCTAGTTTTTCGAGCAAAATGAAGGAAAATCAGGATGGTTTGATAGGAACAGAAGTAAATCCACATGAAAAAACATATGCTTCTCCGGTTCTATATACACAACCAAGAAGACCTCCATGGGGATTTAATGACGGACATCAGAGAAGTGAGATATGGGGCCATGGTGTTGGCAATTCAAATAAAAAGCTTCCATCTGAAAGATCAACAGGAAATGTTCGAGCACATGTTGTTCGAAATCTGAATGTAGACTTGCTTGCTTCAACTACTAGAAAGTCAGAGTCTACTCTCTCTTCACCAAGTCGCAGAGATTGGAGGATGCCCCAAGGAGGTGCAGTGGCAAGACCTGTTTTACAACCTATATCAAGCATGACTTCTAGGGGGAATGAAGGCCATCTCCCAGTGAGAAATGAAGCCATGATCGACCATTCTTCAGAGCATACAGTAAATGGTGATAGAAGAAGGGTTACTTGGGATAAAGATGGTATGAAGAAATCTGCTGCAGAACCAAAAATGGTTGATGAAAATGCAAAAGCACTGGAAATTTCTATTGATGGAGGTGAGAATCAGAGTACTGACACAACTGTTTTAAGGAGCATGGAAAACATGAATGCTTCCGTGGAAGAAGATTGCTTGGGAGACAACAGTTCTGGTACATTGGATAGTGTCCATCAGTCCCCAGCAGATAATGAAAAGCCAACCCCTGATTTTTGGAAGTACAGTGGTAAGAAAAGCTGGGCAGATATGGTGGAAGAAGAAGAAGAAGAGCTGCGAAGTGGAAGAACTGGGAATTTTGATAGCTGGAATACTGGAGATGAGTTTGATGATGAAAACAGGAATCCCAACACAATGACTCCTCAAAGTCCTCAGTTTCAAACTCAAATGAAGGATTTGACATCTGGAAATGCTAGTTCAGCAAGGAATCCTACCACGCGCCGTTCTTTGGCTTTTGATCAGCAGCAGGAGTTAGAATCAGTAGATTACATCAGTTCATCTCCTGTTGCAAAGGAGGCTTTGAATGGAAATGGCTCTATTTACGGAAAGAACTTCAAACTGAATAGGCGAAACAGGCTGCAGAGTTTCCAGGATATAACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

722

Amino Acids

81.19

Weight (kDa)

8.01

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	189 - 220	1.1e-07	Tetratricopeptide repeat
TPR_2	PF07719	190 - 220	4.5e-06	Tetratricopeptide repeat
TPR_19	PF14559	199 - 250	6.2e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	933
AccI	GTMKAC	2 cut(s)	1314, 1349
AccII	CGCG	1 cut(s)	1999
AciI	CCGC	6 cut(s)	47, 50, 53, 125, 165, 296
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	876, 1608, 1855
AcuI	CTGAAG	4 cut(s)	345, 437, 969, 1482
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	6 cut(s)	182, 413, 570, 1639, 1720, 1784
AfiI	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2008
AflIII	ACRYGT	1 cut(s)	1291
AjnI	CCWGG	2 cut(s)	997, 2148
AjuI	GAANNNNNNNTTGG	2 cut(s)	1519, 1551
AluBI	AGCT	9 cut(s)	21, 323, 341, 521, 737, 1255, 1800, 1834, 1866
AluI	AGCT	9 cut(s)	21, 323, 341, 521, 737, 1255, 1800, 1834, 1866
Alw21I	GWGCWC	2 cut(s)	523, 1291
Alw26I	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	7 cut(s)	6, 30, 68, 228, 1067, 1225, 1456
ApeKI	GCWGC	7 cut(s)	248, 598, 826, 1565, 1834, 2023, 2137
ApoI	RAATTY	3 cut(s)	876, 1608, 1855
Asp700I	GAANNNNTTC	2 cut(s)	141, 450
AspLEI	GCGC	3 cut(s)	94, 154, 2001
AspS9I	GGNCC	4 cut(s)	6, 68, 944, 1225
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	1070, 1353, 1529, 1637
AsuII	TTCGAA	2 cut(s)	792, 1300
AvaII	GGWCC	1 cut(s)	944
BanI	GGYRCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	1516, 1548
BbsI	GAAGAC	1 cut(s)	1183
Bbv12I	GWGCWC	2 cut(s)	523, 1291
BbvI	GCAGC	7 cut(s)	235, 610, 838, 1552, 1821, 2035, 2124
BccI	CCATC	9 cut(s)	82, 366, 935, 1097, 1267, 1467, 1541, 1613, 1743
BceAI	ACGGC	2 cut(s)	163, 1986
BciT130I	CCWGG	2 cut(s)	999, 2150
BclI	TGATCA	1 cut(s)	2017
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
BfaI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 1974
BfmI	CTRYAG	2 cut(s)	1566, 2138
BfoI	RGCGCY	1 cut(s)	95
BmcAI	AGTACT	2 cut(s)	570, 1639
Bme1390I	CCNGG	3 cut(s)	34, 999, 2150
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	4 cut(s)	6, 68, 944, 1225
BmiI	GGNNCC	3 cut(s)	93, 654, 1226
BmrFI	CCNGG	3 cut(s)	34, 999, 2150
BmrI	ACTGGG	2 cut(s)	1460, 1860
BmsI	GCATC	3 cut(s)	684, 733, 1374
BmuI	ACTGGG	2 cut(s)	1460, 1860
BpiI	GAAGAC	1 cut(s)	1183
BpmI	CTGGAG	4 cut(s)	282, 671, 842, 1896
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	2 cut(s)	792, 1300
BpuMI	CCSGG	1 cut(s)	34
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	5 cut(s)	56, 1184, 1228, 1390, 1683
BsaWI	WCCGGW	1 cut(s)	1153
BsaXI	ACNNNNNCTCC	6 cut(s)	255, 285, 1386, 1416, 1903, 1933
Bsc4I	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2008
Bse118I	RCCGGY	4 cut(s)	28, 70, 121, 167
Bse1I	ACTGG	8 cut(s)	318, 654, 825, 877, 1466, 1608, 1855, 1879
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	2 cut(s)	999, 2150
BseDI	CCNNGG	5 cut(s)	56, 1184, 1228, 1390, 1683
BseGI	GGATG	4 cut(s)	481, 775, 1108, 1389
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2008
BseMII	CTCAG	3 cut(s)	392, 536, 1946
BseNI	ACTGG	8 cut(s)	318, 654, 825, 877, 1466, 1608, 1855, 1879
BseRI	GAGGAG	2 cut(s)	72, 1911
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	7 cut(s)	235, 610, 838, 1552, 1821, 2035, 2124
BseYI	CCCAGC	3 cut(s)	221, 1744, 1800
BsgI	GTGCAG	2 cut(s)	853, 1419
Bsh1236I	CGCG	1 cut(s)	1999
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	7 cut(s)	8, 32, 70, 230, 1069, 1227, 1458
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	523, 1291
BsiSI	CCGG	6 cut(s)	29, 33, 71, 122, 168, 1154
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	1726
BslI	CCNNNNNNNGG	8 cut(s)	15, 226, 243, 244, 933, 1187, 1394, 2008
BsmAI	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
BsmFI	GGGAC	1 cut(s)	1726
BsmI	GAATGC	2 cut(s)	643, 1681
BsnI	GGCC	7 cut(s)	8, 32, 70, 230, 1069, 1227, 1458
Bsp119I	TTCGAA	2 cut(s)	792, 1300
Bsp1286I	GDGCHC	2 cut(s)	523, 1291
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
Bsp19I	CCATGG	2 cut(s)	1184, 1228
BspACI	CCGC	6 cut(s)	47, 50, 53, 125, 165, 296
BspANI	GGCC	7 cut(s)	8, 32, 70, 230, 1069, 1227, 1458
BspCNI	CTCAG	3 cut(s)	391, 535, 1945
BspFNI	CGCG	1 cut(s)	1999
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	93, 654, 1226
BspMAI	CTGCAG	2 cut(s)	1570, 2142
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	1824
BspT104I	TTCGAA	2 cut(s)	792, 1300
BspT107I	GGYRCC	1 cut(s)	91
BsrFI	RCCGGY	4 cut(s)	28, 70, 121, 167
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	8 cut(s)	318, 654, 825, 877, 1466, 1608, 1855, 1879
BssAI	RCCGGY	4 cut(s)	28, 70, 121, 167
BssECI	CCNNGG	5 cut(s)	56, 1184, 1228, 1390, 1683
BssMI	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	3 cut(s)	1184, 1228, 1390
Bst2UI	CCWGG	2 cut(s)	999, 2150
Bst4CI	ACNGT	5 cut(s)	961, 1510, 1651, 1712, 1787
Bst6I	CTCTTC	4 cut(s)	104, 321, 1363, 1824
BstACI	GRCGYC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	411
BstBI	TTCGAA	2 cut(s)	792, 1300
BstC8I	GCNNGC	5 cut(s)	72, 123, 169, 1067, 1323
BstDEI	CTNAG	5 cut(s)	378, 522, 679, 783, 1932
BstDSI	CCRYGG	4 cut(s)	56, 1184, 1228, 1683
BstF5I	GGATG	4 cut(s)	481, 775, 1108, 1389
BstFNI	CGCG	1 cut(s)	1999
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	3 cut(s)	94, 154, 2001
BstKTI	GATC	7 cut(s)	268, 319, 563, 1045, 1271, 1488, 2020
BstMAI	GTCTC	5 cut(s)	6, 121, 381, 390, 1698
BstMBI	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 257, 329, 338, 1979, 2075, 2134
BstNI	CCWGG	2 cut(s)	999, 2150
BstNSI	RCATGY	2 cut(s)	598, 1295
BstSCI	CCNGG	3 cut(s)	32, 997, 2148
BstSFI	CTRYAG	2 cut(s)	1566, 2138
BstUI	CGCG	1 cut(s)	1999
BstV1I	GCAGC	7 cut(s)	235, 610, 838, 1552, 1821, 2035, 2124
BstV2I	GAAGAC	1 cut(s)	1183
BstXI	CCANNNNNNTGG	1 cut(s)	1235
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	7 cut(s)	8, 32, 70, 230, 1069, 1227, 1458
BtgI	CCRYGG	4 cut(s)	56, 1184, 1228, 1683
BtsCI	GGATG	4 cut(s)	481, 775, 1108, 1389
BtsI	GCAGTG	2 cut(s)	677, 1407
BtsIMutI	CAGTG	8 cut(s)	647, 677, 870, 966, 1407, 1473, 1601, 1792
Cac8I	GCNNGC	5 cut(s)	72, 123, 169, 1067, 1323
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	3 cut(s)	94, 154, 2001
Cfr10I	RCCGGY	4 cut(s)	28, 70, 121, 167
Cfr13I	GGNCC	4 cut(s)	6, 68, 944, 1225
Csp6I	GTAC	6 cut(s)	181, 412, 569, 1638, 1719, 1783
CviQI	GTAC	6 cut(s)	181, 412, 569, 1638, 1719, 1783
DdeI	CTNAG	5 cut(s)	378, 522, 679, 783, 1932
DinI	GGCGCC	1 cut(s)	93
DpnI	GATC	7 cut(s)	267, 318, 562, 1044, 1270, 1487, 2019
DpnII	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	4 cut(s)	104, 321, 1363, 1824
EarI	CTCTTC	4 cut(s)	104, 321, 1363, 1824
Ecl136II	GAGCTC	1 cut(s)	521
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	1184, 1228, 1390
Eco147I	AGGCCT	1 cut(s)	1069
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	944
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	4 cut(s)	345, 437, 969, 1482
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	997, 2148
EcoT14I	CCWWGG	3 cut(s)	1184, 1228, 1390
EcoT38I	GRGCYC	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	93
EheI	GGCGCC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	1184, 1228, 1390
FalI	AAGNNNNNCTT	4 cut(s)	1423, 1455, 1519, 1551
FaqI	GGGAC	1 cut(s)	1726
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	1144
FbaI	TGATCA	1 cut(s)	2017
FblI	GTMKAC	2 cut(s)	1314, 1349
FokI	GGATG	4 cut(s)	488, 782, 1115, 1396
FriOI	GRGCYC	1 cut(s)	523
FspBI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 1974
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	3 cut(s)	93, 153, 2000
GsaI	CCCAGC	3 cut(s)	225, 1748, 1804
GsuI	CTGGAG	4 cut(s)	282, 671, 842, 1896
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	7 cut(s)	8, 32, 70, 230, 1069, 1227, 1458
HapII	CCGG	6 cut(s)	29, 33, 71, 122, 168, 1154
HhaI	GCGC	3 cut(s)	94, 154, 2001
Hin1I	GRCGYC	1 cut(s)	92
Hin6I	GCGC	3 cut(s)	92, 152, 1999
HinP1I	GCGC	3 cut(s)	92, 152, 1999
HindIII	AAGCTT	1 cut(s)	1253
HpaII	CCGG	6 cut(s)	29, 33, 71, 122, 168, 1154
HphI	GGTGA	4 cut(s)	1070, 1353, 1529, 1637
Hpy166II	GTNNAC	4 cut(s)	137, 936, 1315, 1350
Hpy188III	TCNNGA	7 cut(s)	304, 380, 564, 753, 882, 1100, 1965
Hpy8I	GTNNAC	4 cut(s)	137, 936, 1315, 1350
HpyCH4III	ACNGT	5 cut(s)	961, 1510, 1651, 1712, 1787
HpyCH4IV	ACGT	4 cut(s)	147, 183, 469, 796
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 257, 329, 338, 1979, 2075, 2134
HpyF3I	CTNAG	5 cut(s)	378, 522, 679, 783, 1932
HpySE526I	ACGT	4 cut(s)	147, 183, 469, 796
Hsp92I	GRCGYC	1 cut(s)	92
HspAI	GCGC	3 cut(s)	92, 152, 1999
KasI	GGCGCC	1 cut(s)	91
KroI	GCCGGC	3 cut(s)	70, 121, 167
KroNI	GCCGGC	3 cut(s)	72, 123, 169
Ksp22I	TGATCA	1 cut(s)	2017
Kzo9I	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
LguI	GCTCTTC	1 cut(s)	1824
LmnI	GCTCC	4 cut(s)	18, 652, 823, 1659
Lsp1109I	GCAGC	7 cut(s)	235, 610, 838, 1552, 1821, 2035, 2124
LweI	GCATC	3 cut(s)	684, 733, 1374
MaeI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 1974
MaeII	ACGT	4 cut(s)	147, 183, 469, 796
MaeIII	GTNAC	2 cut(s)	955, 1531
MalI	GATC	7 cut(s)	267, 318, 562, 1044, 1270, 1487, 2019
MboI	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	523, 1291
MluCI	AATT	9 cut(s)	203, 407, 540, 708, 846, 876, 1240, 1608, 1855
Mly113I	GGCGCC	1 cut(s)	92
MlyI	GAGTC	7 cut(s)	123, 167, 383, 392, 995, 1355, 1912
MmeI	TCCRAC	1 cut(s)	81
MreI	CGCCGGCG	2 cut(s)	121, 167
MroNI	GCCGGC	3 cut(s)	70, 121, 167
MroXI	GAANNNNTTC	2 cut(s)	141, 450
MseI	TTAA	5 cut(s)	345, 390, 839, 1194, 1655
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	6 cut(s)	29, 33, 71, 122, 168, 1154
MspR9I	CCNGG	3 cut(s)	34, 999, 2150
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	2 cut(s)	643, 1681
MvaI	CCWGG	2 cut(s)	999, 2150
MvnI	CGCG	1 cut(s)	1999
MwoI	GCNNNNNNNGC	7 cut(s)	52, 257, 329, 338, 1979, 2075, 2134
NaeI	GCCGGC	3 cut(s)	72, 123, 169
NarI	GGCGCC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	34
NcoI	CCATGG	2 cut(s)	1184, 1228
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
NgoMIV	GCCGGC	3 cut(s)	70, 121, 167
NlaIV	GGNNCC	3 cut(s)	93, 654, 1226
NmuCI	GTSAC	1 cut(s)	955
NsbI	TGCGCA	1 cut(s)	153
NspI	RCATGY	2 cut(s)	598, 1295
NspV	TTCGAA	2 cut(s)	792, 1300
PagI	TCATGA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	1069
PciI	ACATGT	1 cut(s)	1291
PciSI	GCTCTTC	1 cut(s)	1824
PctI	GAATGC	2 cut(s)	643, 1681
PdiI	GCCGGC	3 cut(s)	72, 123, 169
PdmI	GAANNNNTTC	2 cut(s)	141, 450
PfeI	GAWTC	6 cut(s)	746, 773, 1630, 1903, 1987, 2036
Pfl23II	CGTACG	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	933
PfoI	TCCNGGA	1 cut(s)	2148
PleI	GAGTC	7 cut(s)	122, 167, 382, 391, 994, 1354, 1912
PluTI	GGCGCC	1 cut(s)	95
PpsI	GAGTC	7 cut(s)	122, 167, 382, 391, 994, 1354, 1912
PscI	ACATGT	1 cut(s)	1291
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	997, 2148
PspFI	CCCAGC	3 cut(s)	221, 1744, 1800
PspGI	CCWGG	2 cut(s)	997, 2148
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	93, 654, 1226
PspPI	GGNCC	4 cut(s)	6, 68, 944, 1225
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PstI	CTGCAG	2 cut(s)	1570, 2142
RsaI	GTAC	6 cut(s)	182, 413, 570, 1639, 1720, 1784
RsaNI	GTAC	6 cut(s)	181, 412, 569, 1638, 1719, 1783
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	1824
SaqAI	TTAA	5 cut(s)	345, 390, 839, 1194, 1655
Sau3AI	GATC	7 cut(s)	265, 316, 560, 1042, 1268, 1485, 2017
Sau96I	GGNCC	4 cut(s)	6, 68, 944, 1225
ScaI	AGTACT	2 cut(s)	570, 1639
SchI	GAGTC	7 cut(s)	123, 167, 383, 392, 995, 1355, 1912
ScrFI	CCNGG	3 cut(s)	34, 999, 2150
SduI	GDGCHC	2 cut(s)	523, 1291
SfaNI	GCATC	3 cut(s)	684, 733, 1374
SfcI	CTRYAG	2 cut(s)	1566, 2138
SfoI	GGCGCC	1 cut(s)	93
SfuI	TTCGAA	2 cut(s)	792, 1300
SgrAI	CRCCGGYG	2 cut(s)	121, 167
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	9 cut(s)	203, 407, 540, 708, 846, 876, 1240, 1608, 1855
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	6 cut(s)	47, 50, 53, 125, 165, 296
SspDI	GGCGCC	1 cut(s)	91
SspMI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 1974
SstI	GAGCTC	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	3 cut(s)	32, 997, 2148
StyI	CCWWGG	3 cut(s)	1184, 1228, 1390
TaaI	ACNGT	5 cut(s)	961, 1510, 1651, 1712, 1787
TaiI	ACGT	4 cut(s)	150, 186, 472, 799
TaqI	TCGA	7 cut(s)	268, 319, 792, 1079, 1285, 1300, 1488
TasI	AATT	9 cut(s)	203, 407, 540, 708, 846, 876, 1240, 1608, 1855
TatI	WGTACW	4 cut(s)	411, 568, 1637, 1782
TauI	GCSGC	4 cut(s)	49, 52, 55, 128
TfiI	GAWTC	6 cut(s)	746, 773, 1630, 1903, 1987, 2036
Tru1I	TTAA	5 cut(s)	345, 390, 839, 1194, 1655
Tru9I	TTAA	5 cut(s)	345, 390, 839, 1194, 1655
TscAI	CASTG	8 cut(s)	654, 677, 877, 966, 1407, 1473, 1608, 1792
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	7 cut(s)	248, 598, 826, 1565, 1834, 2023, 2137
Tsp45I	GTSAC	1 cut(s)	955
TspGWI	ACGGA	4 cut(s)	73, 1215, 1672, 2118
TspRI	CASTG	8 cut(s)	654, 677, 877, 966, 1407, 1473, 1608, 1792
Van91I	CCANNNNNTGG	1 cut(s)	933
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	3 cut(s)	876, 1608, 1855
XceI	RCATGY	2 cut(s)	598, 1295
XmiI	GTMKAC	2 cut(s)	1314, 1349
XmnI	GAANNNNTTC	2 cut(s)	141, 450
XspI	CTAG	5 cut(s)	572, 1071, 1335, 1443, 1974
ZrmI	AGTACT	2 cut(s)	570, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.