Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Forward (+)

11505299 .. 11506821

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12960.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATAGTGTTGAATCAGCCACTATCAAGCAGTTCAAATAAAAAGCTCTTATTCGACCAATGTCCAAAAATAGAAAACGTGCGAGCACATGTTGTTCGAAGTCTCAATGGAGATTTGCCAGCTTTAACGGTTAGAAAGTCAGAAGTCGCAGTTCACAACTCGGTGTCTAGCTTGTCTTCACCAATTAGCAGAGATTTGAAGAGGCTCCAGGGTGGCAGGGGTACATCTCGGGCAATCAATGGTTGTTTCCAGCTGGAAGTGAAAGCCATTGTAGTCAGTTTTTCCCAGATTATTTTGAATGACAATTGGAGAAAGGTCAGCTGGGAAAACGGCAGCATAGAACTAATTTTTATGGAAGGTTGTTTTCGAGAGAACAGTTCTGGTGAATTAGATATGGTCTGGCAACCCTTAGCAGAAAATCAAAAGCAAAAGCAAGGTCCTGATCTTATTATGTACAGTTTGTGCGTGGGAAGTCTGGGACGAAAGAGGCGTTACAATTTGTGGCTGAAACTGAGCAGCAGTTGCTCAACCTACGATATTCAAGTAGCAAATGTGTCGATTGGAGCTTATGATAAAACAGGGACCATAAATACAAACCAGACGGCAGTGGCAAAACTTTTAGCTTTGCATCCTAGGCTTATTGTACTATTGAAGTTTAGGGTGGATGGAATTATATACAATCCATTTGATGGTGAAATTCTTAACCGCTCATCTCCTTTTACTTACGCATTTCCAATTAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

249

Amino Acids

27.68

Weight (kDa)

9.51

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccBSI	CCGCTC	1 cut(s)	708
AciI	CCGC	1 cut(s)	706
AcsI	RAATTY	1 cut(s)	696
AfaI	GTAC	3 cut(s)	223, 455, 645
AfiI	CCNNNNNNNGG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	6 cut(s)	13, 36, 199, 298, 542, 652
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	7 cut(s)	46, 122, 171, 253, 321, 566, 623
AluI	AGCT	7 cut(s)	46, 122, 171, 253, 321, 566, 623
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	333, 516
ApoI	RAATTY	1 cut(s)	696
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspA2I	CCTAGG	1 cut(s)	632
AspS9I	GGNCC	2 cut(s)	437, 582
AsuHPI	GGTGA	3 cut(s)	171, 395, 704
AsuII	TTCGAA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	2 cut(s)	437, 582
AvrII	CCTAGG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	345, 528
BccI	CCATC	2 cut(s)	659, 683
BceAI	ACGGC	2 cut(s)	346, 618
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	168, 633
BisI	GCNGC	2 cut(s)	334, 517
BlnI	CCTAGG	1 cut(s)	632
BlsI	GCNGC	2 cut(s)	335, 518
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	437, 582
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	437, 582
BmiI	GGNNCC	2 cut(s)	206, 583
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	637
BoxI	GACNNNNGTC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	208, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	208, 632
BseGI	GGATG	2 cut(s)	628, 670
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMII	CTCAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	345, 528
BseYI	CCCAGC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	492, 595
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	492, 595
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	1 cut(s)	706
BspCNI	CTCAG	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	743
BspLI	GGNNCC	2 cut(s)	206, 583
BspT104I	TTCGAA	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	708
BsrGI	TGTACA	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	208, 632
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	130, 377, 458
Bst6I	CTCTTC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	522
BstAUI	TGTACA	1 cut(s)	453
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	84, 120
BstDEI	CTNAG	2 cut(s)	409, 512
BstF5I	GGATG	2 cut(s)	628, 670
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	522, 634
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	345, 528
BstV2I	GAAGAC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	628, 670
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	2 cut(s)	84, 120
CciI	TCATGA	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	437, 582
Csp6I	GTAC	3 cut(s)	222, 454, 644
CviAII	CATG	2 cut(s)	89, 744
CviQI	GTAC	3 cut(s)	222, 454, 644
DdeI	CTNAG	2 cut(s)	409, 512
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	437, 582
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	2 cut(s)	92, 747
FaqI	GGGAC	2 cut(s)	492, 595
FatI	CATG	2 cut(s)	88, 743
Fnu4HI	GCNGC	2 cut(s)	334, 517
FokI	GGATG	2 cut(s)	615, 677
Fsp4HI	GCNGC	2 cut(s)	334, 517
FspBI	CTAG	2 cut(s)	168, 633
GluI	GCNGC	2 cut(s)	334, 517
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	92, 747
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	3 cut(s)	171, 395, 704
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	368, 440, 744
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	130, 377, 458
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	522, 634
HpyF3I	CTNAG	2 cut(s)	409, 512
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	92, 747
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	210, 563
Lsp1109I	GCAGC	2 cut(s)	345, 528
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	168, 633
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	1 cut(s)	444
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	168, 211
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	8 cut(s)	183, 304, 345, 386, 496, 669, 696, 735
MnlI	CCTC	2 cut(s)	195, 480
MseI	TTAA	3 cut(s)	125, 702, 738
MspA1I	CMGCKG	2 cut(s)	253, 321
MspR9I	CCNGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	522, 634
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	92, 747
NlaIV	GGNNCC	2 cut(s)	206, 583
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	97
PagI	TCATGA	1 cut(s)	743
PciI	ACATGT	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	335, 518
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	206, 583
PspPI	GGNCC	2 cut(s)	437, 582
PspPPI	RGGWCCY	1 cut(s)	437
PvuII	CAGCTG	2 cut(s)	253, 321
RsaI	GTAC	3 cut(s)	223, 455, 645
RsaNI	GTAC	3 cut(s)	222, 454, 644
SaqAI	TTAA	3 cut(s)	125, 702, 738
SatI	GCNGC	2 cut(s)	334, 517
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	2 cut(s)	437, 582
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	2 cut(s)	437, 582
Sse9I	AATT	8 cut(s)	183, 304, 345, 386, 496, 669, 696, 735
SsiI	CCGC	1 cut(s)	706
SspMI	CTAG	2 cut(s)	168, 633
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	130, 377, 458
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	4 cut(s)	54, 97, 367, 557
TasI	AATT	8 cut(s)	183, 304, 345, 386, 496, 669, 696, 735
TatI	WGTACW	2 cut(s)	453, 643
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	125, 702, 738
Tru9I	TTAA	3 cut(s)	125, 702, 738
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	2 cut(s)	333, 516
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	2 cut(s)	437, 582
XapI	RAATTY	1 cut(s)	696
XceI	RCATGY	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	632
XspI	CTAG	2 cut(s)	168, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.