Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011540

Physical Location & Seq

Genomic Coordinates Forward (+)

2147330 .. 2148809

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0032600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGGATTTATTCTTTTGGGTTCGCATCACAAATATGCCGCCGGCATATGAACAAAGGAATACTATTGCAAATGTTGCTACTGTTGCAGGTAAATTCATTGAACTGGACCAAAAGTTTTTTGATGCAACTGGAGAGATTAGGGTTAGGGTTTCACATGCAATTTCGAAACCTTTTTTCATGCAAAAAACCCTAAAGTTCGCCAAAGGGATTGAGCAAGAGGTTCACTTCTTCTTTAAAAACCTCGTGGACAAATGCAAGACATGTCAGCGTGTGTATCATGAGGGAGAAGCATGCAATGGTGAAACTGCAACTCCACCGGTCACTGCTACCCCATCACCAGCGGCAAGAAAACTAGAGTTCAATGGCTCATTTTTAGGATTTTCAGGAAATCAATTCAAGGATGGAATGTTTCACTTCCAAGGTCTCACTACCCCTATTCTTCCGCTGGTTGGAAGGTCTTTGTTTGGAGGAGCTGAGACAAGTAAGGTATGCAAACCTATTGTTATTTGTAGTGCAGAAAAAAGACACGCTGACGGCAATGAGTTGGCTTTGGTACCCGTGGACCCCTACCTGCAAGCAAAGAGAGACCGGTCATTTTCTTCTCCAAAAAAGCTCCAATTTTTTATGTTTGATTTCCTGGAAGGCAAAACAAGCCCTATTGCTCCCTCCAAGAAGGTAAAAATGTCTGAATTCCCTACCAAGTTCAGTGCAAAATCTCTCAGTTTAGTAGAGACACCAGGTGGTATGTTGGTGCCTGCAGATGTAATGATGCCCAAACCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007049 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

262

Amino Acids

29.16

Weight (kDa)

9.22

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10260 FvH4_3g10260 FvH4_3g10260
malus_domestica	MD05G1271200.v1.1 MD10G1251800.v1.1
prunus_persica	Prupe.4G091600_v2.0.a1
pyrus_communis	pycom05g25360 pycom09g12960 pycom10g20770
rosa_chinensis	RchiOBHm_Chr5g0016521
rosa_laevigata	RLG00000032255
rosa_multiflora	Rmu_sc0001235.1_g000019 Rmu_sc0035140.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060360
rosa_rugosa	Rorug05G0032600
rosa_samantha	Rh5AG126800 Rh5BG125700 Rh5CG138400 Rh5DG125800
rosa_wichuraiana	Rw5G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	80, 582
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	556, 754
AciI	CCGC	3 cut(s)	41, 344, 446
AcsI	RAATTY	2 cut(s)	95, 692
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	263
AgeI	ACCGGT	2 cut(s)	319, 591
AgsI	TTSAA	3 cut(s)	104, 364, 400
AjnI	CCWGG	2 cut(s)	639, 739
AluBI	AGCT	2 cut(s)	476, 616
AluI	AGCT	2 cut(s)	476, 616
Alw26I	GTCTC	4 cut(s)	431, 473, 582, 728
ApoI	RAATTY	2 cut(s)	95, 692
AsiGI	ACCGGT	2 cut(s)	319, 591
Asp718I	GGTACC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	109, 565
AsuHPI	GGTGA	2 cut(s)	314, 330
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	109, 565
BanI	GGYRCC	2 cut(s)	556, 754
BauI	CACGAG	1 cut(s)	245
BccI	CCATC	2 cut(s)	343, 398
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	2 cut(s)	641, 741
BcoDI	GTCTC	4 cut(s)	431, 473, 582, 728
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	759
BfuAI	ACCTGC	2 cut(s)	80, 582
BisI	GCNGC	2 cut(s)	41, 345
BlsI	GCNGC	2 cut(s)	42, 346
Bme1390I	CCNGG	2 cut(s)	641, 741
Bme18I	GGWCC	2 cut(s)	109, 565
BmgT120I	GGNCC	2 cut(s)	109, 565
BmiI	GGNNCC	3 cut(s)	558, 567, 756
BmrFI	CCNGG	2 cut(s)	641, 741
BmsI	GCATC	3 cut(s)	36, 115, 762
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	167
BsaI	GGTCTC	2 cut(s)	431, 582
BsaJI	CCNNGG	2 cut(s)	421, 561
BsaWI	WCCGGW	2 cut(s)	319, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	3 cut(s)	43, 319, 591
Bse1I	ACTGG	2 cut(s)	111, 136
Bse3DI	GCAATG	2 cut(s)	304, 547
BseBI	CCWGG	2 cut(s)	641, 741
BseDI	CCNNGG	2 cut(s)	421, 561
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	2 cut(s)	304, 547
BseMII	CTCAG	2 cut(s)	468, 736
BseNI	ACTGG	2 cut(s)	111, 136
BseRI	GAGGAG	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	537
BshNI	GGYRCC	2 cut(s)	556, 754
BshTI	ACCGGT	2 cut(s)	319, 591
BsiSI	CCGG	3 cut(s)	44, 320, 592
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	4 cut(s)	431, 473, 582, 728
Bso31I	GGTCTC	2 cut(s)	431, 582
Bsp119I	TTCGAA	1 cut(s)	167
BspACI	CCGC	3 cut(s)	41, 344, 446
BspCNI	CTCAG	2 cut(s)	469, 735
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	558, 567, 756
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	2 cut(s)	80, 582
BspT104I	TTCGAA	1 cut(s)	167
BspT107I	GGYRCC	2 cut(s)	556, 754
BspTNI	GGTCTC	2 cut(s)	431, 582
BsrDI	GCAATG	2 cut(s)	304, 547
BsrFI	RCCGGY	3 cut(s)	43, 319, 591
BsrI	ACTGG	2 cut(s)	111, 136
BssAI	RCCGGY	3 cut(s)	43, 319, 591
BssECI	CCNNGG	2 cut(s)	421, 561
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	641, 741
Bst4CI	ACNGT	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	4 cut(s)	45, 295, 579, 759
BstDEI	CTNAG	2 cut(s)	477, 722
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	409
BstMAI	GTCTC	4 cut(s)	431, 473, 582, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 86, 654
BstNI	CCWGG	2 cut(s)	641, 741
BstNSI	RCATGY	3 cut(s)	161, 267, 297
BstSCI	CCNGG	2 cut(s)	639, 739
BstSFI	CTRYAG	1 cut(s)	759
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 715
BveI	ACCTGC	2 cut(s)	80, 582
Cac8I	GCNNGC	4 cut(s)	45, 295, 579, 759
CciI	TCATGA	1 cut(s)	280
Cfr10I	RCCGGY	3 cut(s)	43, 319, 591
Cfr13I	GGNCC	2 cut(s)	109, 565
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	1 cut(s)	557
CspAI	ACCGGT	2 cut(s)	319, 591
CviAII	CATG	5 cut(s)	158, 181, 264, 281, 294
CviJI	RGCY	5 cut(s)	369, 476, 551, 616, 657
CviKI_1	RGCY	5 cut(s)	369, 476, 551, 616, 657
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	477, 722
DraI	TTTAAA	1 cut(s)	238
DraIII	CACNNNGTG	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	2 cut(s)	431, 582
Eco47I	GGWCC	2 cut(s)	109, 565
EcoRI	GAATTC	1 cut(s)	692
EcoRII	CCWGG	2 cut(s)	639, 739
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	161, 184, 267, 284, 297
FatI	CATG	5 cut(s)	157, 180, 263, 280, 293
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	41, 345
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	41, 345
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	2 cut(s)	41, 345
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	3 cut(s)	44, 320, 592
Hin1II	CATG	5 cut(s)	161, 184, 267, 284, 297
HpaII	CCGG	3 cut(s)	44, 320, 592
HphI	GGTGA	2 cut(s)	314, 330
Hpy166II	GTNNAC	3 cut(s)	226, 250, 565
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	2 cut(s)	281, 387
Hpy8I	GTNNAC	3 cut(s)	226, 250, 565
HpyAV	CCTTC	3 cut(s)	450, 638, 670
HpyCH4III	ACNGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 86, 654
HpyF3I	CTNAG	2 cut(s)	477, 722
Hsp92II	CATG	5 cut(s)	161, 184, 267, 284, 297
KpnI	GGTACC	1 cut(s)	560
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	473, 621, 670
LweI	GCATC	3 cut(s)	36, 115, 762
MabI	ACCWGGT	1 cut(s)	739
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	322
MboII	GAAGA	3 cut(s)	223, 434, 594
MluCI	AATT	5 cut(s)	95, 162, 395, 620, 692
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	5 cut(s)	214, 254, 277, 464, 679
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	2 cut(s)	344, 448
MspI	CCGG	3 cut(s)	44, 320, 592
MspR9I	CCNGG	2 cut(s)	641, 741
MvaI	CCWGG	2 cut(s)	641, 741
MwoI	GCNNNNNNNGC	3 cut(s)	77, 86, 654
NaeI	GCCGGC	1 cut(s)	45
NdeI	CATATG	1 cut(s)	49
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	5 cut(s)	161, 184, 267, 284, 297
NlaIV	GGNNCC	3 cut(s)	558, 567, 756
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	3 cut(s)	161, 267, 297
NspV	TTCGAA	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	297
PagI	TCATGA	1 cut(s)	280
PciI	ACATGT	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	639
PinAI	ACCGGT	2 cut(s)	319, 591
PkrI	GCNGC	2 cut(s)	42, 346
PscI	ACATGT	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	639, 739
PspGI	CCWGG	2 cut(s)	639, 739
PspN4I	GGNNCC	3 cut(s)	558, 567, 756
PspPI	GGNCC	2 cut(s)	109, 565
PstI	CTGCAG	1 cut(s)	763
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	41, 345
Sau96I	GGNCC	2 cut(s)	109, 565
ScrFI	CCNGG	2 cut(s)	641, 741
SexAI	ACCWGGT	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	36, 115, 762
SfcI	CTRYAG	1 cut(s)	759
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	2 cut(s)	109, 565
SmiMI	CAYNNNNRTG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	297
Sse9I	AATT	5 cut(s)	95, 162, 395, 620, 692
SsiI	CCGC	3 cut(s)	41, 344, 446
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	639, 739
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	167
TasI	AATT	5 cut(s)	95, 162, 395, 620, 692
TauI	GCSGC	2 cut(s)	43, 347
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	331, 715
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	66, 88, 169
TspRI	CASTG	2 cut(s)	331, 715
VpaK11BI	GGWCC	2 cut(s)	109, 565
XapI	RAATTY	2 cut(s)	95, 692
XceI	RCATGY	3 cut(s)	161, 267, 297
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.