MD05G1277800.v1.1

Phospholipase A1-Igamma1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0009590
Physical Location & Seq
Reverse (-)
41243911 .. 41244894
984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1277800.v1.1.491

Sequence Viewer

Length: 984 bp
ATGTCACACATTGACATGCCGCAGTGGCTGGAAAGGTCACTCTTGGCTGACACATGGAGCAAGCATTCCAACTGGATGGGGTATGTTGCCGTGAGCGATGAGGAGGAGACTAAGAGGATTGGGAGGAGGGACATTGTGCTGGCGTGGTGGGGCACTGTAGCACCATCGGAGTGGTATGAGGATATGCAAAGGAAATTGGAGCCAATTGGAGGTGGAGATGCCAAAGTGGAACATGGGTTCCATGGGATTTACACTGCCAAGAGTGACACCACAAGGTACAACGGGTCTAGTGCATCAGAGCAAGTCATGAAAGAAGTGACTTGGCTTGTGGAGTTGTACCAGGCAAAAGGTGAAGAAGTGAGCCTAACAATCACAGGGCATAGCTTGGGAGGTGCATTGGCTTTGCTCAATGCCTATGAAGCTGCCGAAAAACTCCCTGGCCTTCCGATAAGCGTAATTTCCTTTGGCGCCCCTAGGGTTGGAAACATTGCCTTCAAGGAAGAGCTACACCAAATGGGAGTCAAGACATTGAGGATTGTGGTTAAACAAGACATGGTTCCGAAAATTCCTGGGCTTGTTTTGAATGAGAGTCTTCAAAAATTTGATGACTTTACGGGCACATTGGATTGGGTTTACACACATGTTGGAGCTGAATTGAAGCTCGAAATTGGTTCTTCGCCTTATCTCAAGCGTGGCGGGTTCAATCTGACAGGGTTTCATAGCCTCGAGACCTACCTTCATCTTGTGGATGGGTTTTTGAGTACAGAAACTACTTTTAGGACAAATGCTAGGAGGGATATTACCTTGGTGAACAAGGGATGTGACATGTTGGTGGATGATCTCAGAATCCTACAATGTTGGTACCAATTGCCACACAAGGGGTTAGTAAGAAACGCTCATGGGAGATGGGTTAAACCGAAACGAGACCCCGAAGACATCCCTTCACCTAGAATAGAAGCACAAGCACAAGCTCATGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

328

Amino Acids

36.77

Weight (kDa)

6.07

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 46 - 192 1.5e-30 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 861
AccB1I GGYRCC 2 cut(s) 467, 861
AciI CCGC 2 cut(s) 20, 696
AcsI RAATTY 2 cut(s) 564, 599
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 4 cut(s) 278, 338, 763, 863
AfiI CCNNNNNNNGG 3 cut(s) 209, 479, 878
AflIII ACRYGT 2 cut(s) 640, 825
AgsI TTSAA 5 cut(s) 496, 583, 596, 658, 703
AjnI CCWGG 3 cut(s) 339, 436, 568
AloI GAACNNNNNNTCC 4 cut(s) 221, 222, 253, 254
AluBI AGCT 6 cut(s) 384, 422, 505, 650, 661, 971
AluI AGCT 6 cut(s) 384, 422, 505, 650, 661, 971
Alw26I GTCTC 3 cut(s) 101, 722, 918
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 564, 599
Asp718I GGTACC 1 cut(s) 861
AspA2I CCTAGG 1 cut(s) 473
AspLEI GCGC 1 cut(s) 470
AsuHPI GGTGA 3 cut(s) 362, 820, 936
AvaI CYCGRG 1 cut(s) 725
AvrII CCTAGG 1 cut(s) 473
BaeGI GKGCMC 2 cut(s) 155, 620
BanI GGYRCC 2 cut(s) 467, 861
BbsI GAAGAC 2 cut(s) 584, 939
BbvI GCAGC 1 cut(s) 409
BccI CCATC 4 cut(s) 70, 172, 743, 900
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 341, 438, 570
BcoDI GTCTC 3 cut(s) 101, 722, 918
BfaI CTAG 4 cut(s) 288, 474, 789, 948
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 2 cut(s) 20, 423
BlnI CCTAGG 1 cut(s) 473
BlsI GCNGC 2 cut(s) 21, 424
Bme1390I CCNGG 3 cut(s) 341, 438, 570
BmeT110I CYCGRG 1 cut(s) 725
BmiI GGNNCC 5 cut(s) 201, 239, 469, 558, 863
BmrFI CCNGG 3 cut(s) 341, 438, 570
BmsI GCATC 2 cut(s) 208, 302
BpiI GAAGAC 2 cut(s) 584, 939
BpuEI CTTGAG 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 2 cut(s) 722, 918
BsaJI CCNNGG 5 cut(s) 241, 436, 473, 569, 804
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 479, 878
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 3 cut(s) 341, 438, 570
BseDI CCNNGG 5 cut(s) 241, 436, 473, 569, 804
BseGI GGATG 5 cut(s) 81, 754, 824, 841, 936
BseLI CCNNNNNNNGG 3 cut(s) 209, 479, 878
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 856
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 3 cut(s) 116, 119, 139
BseSI GKGCMC 2 cut(s) 155, 620
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 1 cut(s) 441
BshNI GGYRCC 2 cut(s) 467, 861
BsiHKCI CYCGRG 1 cut(s) 725
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 209, 479, 878
BsmAI GTCTC 3 cut(s) 101, 722, 918
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 441
Bso31I GGTCTC 2 cut(s) 722, 918
BsoBI CYCGRG 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 155, 620
Bsp143I GATC 1 cut(s) 838
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 20, 696
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 1 cut(s) 855
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 5 cut(s) 201, 239, 469, 558, 863
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 2 cut(s) 467, 861
BspTNI GGTCTC 2 cut(s) 722, 918
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 5 cut(s) 241, 436, 473, 569, 804
BssMI GATC 1 cut(s) 838
BssNI GRCGYC 1 cut(s) 468
BssT1I CCWWGG 3 cut(s) 241, 473, 804
Bst2UI CCWGG 3 cut(s) 341, 438, 570
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 62, 141
BstDEI CTNAG 2 cut(s) 111, 842
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 5 cut(s) 81, 754, 824, 841, 936
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 1 cut(s) 841
BstMAI GTCTC 3 cut(s) 101, 722, 918
BstMBI GATC 1 cut(s) 838
BstMWI GCNNNNNNNGC 2 cut(s) 25, 419
BstNI CCWGG 3 cut(s) 341, 438, 570
BstNSI RCATGY 3 cut(s) 19, 644, 829
BstSCI CCNGG 3 cut(s) 339, 436, 568
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 2 cut(s) 155, 620
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 2 cut(s) 584, 939
BstXI CCANNNNNNTGG 2 cut(s) 76, 171
BsuRI GGCC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 5 cut(s) 81, 754, 824, 841, 936
BtsI GCAGTG 2 cut(s) 29, 252
BtsIMutI CAGTG 3 cut(s) 29, 153, 252
Cac8I GCNNGC 2 cut(s) 62, 141
CaiI CAGNNNCTG 1 cut(s) 28
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 470
Csp6I GTAC 4 cut(s) 277, 337, 762, 862
CviQI GTAC 4 cut(s) 277, 337, 762, 862
DdeI CTNAG 2 cut(s) 111, 842
DinI GGCGCC 1 cut(s) 469
DpnI GATC 1 cut(s) 840
DpnII GATC 1 cut(s) 838
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 3 cut(s) 241, 473, 804
Eco31I GGTCTC 2 cut(s) 722, 918
Eco88I CYCGRG 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 339, 436, 568
EcoT14I CCWWGG 3 cut(s) 241, 473, 804
EgeI GGCGCC 1 cut(s) 469
EheI GGCGCC 1 cut(s) 469
ErhI CCWWGG 3 cut(s) 241, 473, 804
FaqI GGGAC 1 cut(s) 143
FauI CCCGC 1 cut(s) 689
Fnu4HI GCNGC 2 cut(s) 20, 423
FokI GGATG 5 cut(s) 88, 761, 831, 848, 923
Fsp4HI GCNGC 2 cut(s) 20, 423
FspBI CTAG 4 cut(s) 288, 474, 789, 948
GlaI GCGC 1 cut(s) 469
GluI GCNGC 2 cut(s) 20, 423
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 1 cut(s) 441
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 468
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 3 cut(s) 519, 589, 846
HphI GGTGA 3 cut(s) 362, 820, 936
Hpy166II GTNNAC 2 cut(s) 634, 811
Hpy188I TCNGA 6 cut(s) 169, 298, 447, 561, 708, 845
Hpy188III TCNNGA 3 cut(s) 307, 523, 727
Hpy8I GTNNAC 2 cut(s) 634, 811
HpyAV CCTTC 4 cut(s) 452, 502, 746, 951
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 187, 293, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 419
HpyF3I CTNAG 2 cut(s) 111, 842
Hsp92I GRCGYC 1 cut(s) 468
HspAI GCGC 1 cut(s) 468
KasI GGCGCC 1 cut(s) 467
KpnI GGTACC 1 cut(s) 865
Kzo9I GATC 1 cut(s) 838
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 3 cut(s) 57, 199, 647
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 2 cut(s) 208, 302
MaeI CTAG 4 cut(s) 288, 474, 789, 948
MaeIII GTNAC 5 cut(s) 3, 36, 263, 316, 821
MalI GATC 1 cut(s) 840
MboI GATC 1 cut(s) 838
MboII GAAGA 5 cut(s) 365, 512, 584, 666, 944
MfeI CAATTG 2 cut(s) 204, 866
MhlI GDGCHC 2 cut(s) 155, 620
MluCI AATT 8 cut(s) 194, 204, 456, 564, 599, 653, 666, 866
Mly113I GGCGCC 1 cut(s) 468
MlyI GAGTC 2 cut(s) 528, 598
MmeI TCCRAC 3 cut(s) 93, 460, 625
MseI TTAA 3 cut(s) 543, 912, 982
MslI CAYNNNNRTG 3 cut(s) 14, 169, 830
MspR9I CCNGG 3 cut(s) 341, 438, 570
MunI CAATTG 2 cut(s) 204, 866
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 3 cut(s) 341, 438, 570
MwoI GCNNNNNNNGC 2 cut(s) 25, 419
NarI GGCGCC 1 cut(s) 468
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 838
NlaIV GGNNCC 5 cut(s) 201, 239, 469, 558, 863
NmuCI GTSAC 5 cut(s) 3, 36, 263, 316, 821
NspI RCATGY 3 cut(s) 19, 644, 829
PaeR7I CTCGAG 1 cut(s) 725
PagI TCATGA 1 cut(s) 306
PciI ACATGT 2 cut(s) 640, 825
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 846
PkrI GCNGC 2 cut(s) 21, 424
PleI GAGTC 2 cut(s) 527, 597
PluTI GGCGCC 1 cut(s) 471
PpsI GAGTC 2 cut(s) 527, 597
PscI ACATGT 2 cut(s) 640, 825
Psp6I CCWGG 3 cut(s) 339, 436, 568
PspGI CCWGG 3 cut(s) 339, 436, 568
PspN4I GGNNCC 5 cut(s) 201, 239, 469, 558, 863
PstNI CAGNNNCTG 1 cut(s) 28
RsaI GTAC 4 cut(s) 278, 338, 763, 863
RsaNI GTAC 4 cut(s) 277, 337, 762, 862
RseI CAYNNNNRTG 3 cut(s) 14, 169, 830
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 3 cut(s) 543, 912, 982
SatI GCNGC 2 cut(s) 20, 423
Sau3AI GATC 1 cut(s) 838
SchI GAGTC 2 cut(s) 528, 598
ScrFI CCNGG 3 cut(s) 341, 438, 570
SduI GDGCHC 2 cut(s) 155, 620
SfaNI GCATC 2 cut(s) 208, 302
SfcI CTRYAG 1 cut(s) 156
SfoI GGCGCC 1 cut(s) 469
Sfr274I CTCGAG 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 3 cut(s) 14, 169, 830
SmlI CTYRAG 2 cut(s) 686, 725
SmoI CTYRAG 2 cut(s) 686, 725
Sse9I AATT 8 cut(s) 194, 204, 456, 564, 599, 653, 666, 866
SsiI CCGC 2 cut(s) 20, 696
SspDI GGCGCC 1 cut(s) 467
SspMI CTAG 4 cut(s) 288, 474, 789, 948
StyD4I CCNGG 3 cut(s) 339, 436, 568
StyI CCWWGG 3 cut(s) 241, 473, 804
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 663, 726
TasI AATT 8 cut(s) 194, 204, 456, 564, 599, 653, 666, 866
TatI WGTACW 1 cut(s) 761
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 846
Tru1I TTAA 3 cut(s) 543, 912, 982
Tru9I TTAA 3 cut(s) 543, 912, 982
TscAI CASTG 3 cut(s) 29, 160, 259
TseFI GTSAC 5 cut(s) 3, 36, 263, 316, 821
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 5 cut(s) 3, 36, 263, 316, 821
TspDTI ATGAA 4 cut(s) 323, 432, 707, 728
TspRI CASTG 3 cut(s) 29, 160, 259
XapI RAATTY 2 cut(s) 564, 599
XceI RCATGY 3 cut(s) 19, 644, 829
XhoI CTCGAG 1 cut(s) 725
XmaJI CCTAGG 1 cut(s) 473
XspI CTAG 4 cut(s) 288, 474, 789, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.