Rorug05G0022900

Phospholipase A1-Igamma1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
1451587 .. 1452963
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0022900.1

Sequence Viewer

Length: 1377 bp
ATGATGAAGGAGAAGAGCGCAGGAGAAGAGGCCAGCAGCACCAAAGCGTCGTGGGAGAAGCGCTCCCTCGAATTTATTGACTCCTTGAGGAACTTCCCATGGTTCAAGGAGTATCAGAACCTCATGAAAGACTACAAGAACAAAGAAATCGACTTGGCAATTTTGGTGGAGAAGATGGTGGAATTGTTTAAAGGGCGCCCGGAGTTGATAGCAGGGTTCAATAAATTCTTGCCAGAAACATATCAAATTACCATACCAGCACCAACGCTACTACCTAGGGTTAGAATAGTTTGTCAAAAGAGGAAGCGCAGCGATGATAGTGCTAGTGATAGTGGTGGTGGAGCTAAGGACTCTAAGATTCGAAAAGTTATCAGGTGTGATTACAAGACCAAGGGAAGGTTTCACGACGAAGATAAGGAAAGTGATGAAGGTCACCATGTTTTCTTGGGACACGAATCCCCAACTCTGTCACCAAGACCTAGGATTACAGTTCTTTCAAACAAGGCGAAGAACGATGATGATAGTACCACTGATTGTGATGACGCTGGATCTATAGATTCTAAACTTCGGAAAGTTATTGCTTTTGTGAACAAGGTCGAGGAAAGGTTCCGCAGCAACAATGATGATGGTGGTGACGATGATGATACTTGTCAATCCCATATAGAGTTTTTCTTGGATATGGTCTGCAAAAGAAACAAATCATCACCCAATAGATCTATCGATGCTGATGAAGAAGAGCTTCAGATTTACAAGAAGGTTGCAACACTTTTGGAAGGCCACTCGGACTTAATTGATGAGTTCACCCAGTTTTTAACCGAAGTGCCTAGAGTCGACTCCATCATTGATTTCCGTAAGTGCAAGACTTGCACTCCAAGCTACCGTCTTTTGCCAAAAAATCTCCCCATTCCTGGTGCTACCAAAAGATCCAAGCTAGCTTCTGAAGTATTAAATGATCGTTGGGTATGCGTTAACACAAGTCCTAGTACTACTAGTTCTACTTCAAGAGGAGGTGGACGACGCATAAACCGCAAATCGCAGCATGAGCAAGACCTATTAGACTGGGAAGAAGAAAAGTATGAACATGATATGTTGGAAGAGTATGTGAATTCGGTCGCAAATAATATCGCAGCGCTAATAAAAGAGATTAAAAACGAGAGTCCGACGGAGATTTATCTTGAAGAACATCTCACGGAGATGAATTTGAGGTGCATTGAGAGATTGTATGGTCTGCGAGGGCGTGATATGGTTGATTTGTTGAAGAACAATATTCAAGCGGTTTTGCCTGTCATATTAAGACGGTTGAAGCAAAAGCAGAAAGAACTGAAACGAAAACGTTCTGATCTAAAACAAGAGTGGGCTCATTTATTTCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

52.86

Weight (kDa)

6.6

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH PF02671 37 - 77 1.5e-09 Paired amphipathic helix repeat
Sin3_corepress PF08295 287 - 388 1.1e-19 Sin3 family co-repressor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 831
AciI CCGC 3 cut(s) 610, 1027, 1274
AclI AACGTT 1 cut(s) 1333
AclWI GGATC 2 cut(s) 556, 918
AcsI RAATTY 4 cut(s) 71, 224, 1105, 1198
AcuI CTGAAG 2 cut(s) 725, 960
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 2 cut(s) 526, 985
AfeI AGCGCT 2 cut(s) 62, 1131
AfiI CCNNNNNNNGG 2 cut(s) 396, 908
AgsI TTSAA 8 cut(s) 106, 220, 498, 1002, 1178, 1258, 1271, 1303
AhlI ACTAGT 1 cut(s) 989
AjnI CCWGG 1 cut(s) 907
AluBI AGCT 5 cut(s) 344, 739, 876, 931, 935
AluI AGCT 5 cut(s) 344, 739, 876, 931, 935
AlwI GGATC 2 cut(s) 556, 918
Aor51HI AGCGCT 2 cut(s) 62, 1131
AoxI GGCC 2 cut(s) 30, 775
ApeKI GCWGC 5 cut(s) 36, 309, 612, 1036, 1127
ApoI RAATTY 4 cut(s) 71, 224, 1105, 1198
Asp700I GAANNNNTTC 2 cut(s) 738, 1333
AspA2I CCTAGG 2 cut(s) 275, 479
AspLEI GCGC 5 cut(s) 20, 63, 198, 309, 1132
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 5 cut(s) 425, 462, 644, 696, 793
AsuII TTCGAA 1 cut(s) 361
AsuNHI GCTAGC 1 cut(s) 931
AvrII CCTAGG 2 cut(s) 275, 479
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 1360
BbvI GCAGC 5 cut(s) 48, 321, 624, 1048, 1139
BccI CCATC 3 cut(s) 169, 620, 845
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 909
BcnI CCSGG 1 cut(s) 200
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 7 cut(s) 276, 324, 480, 825, 932, 981, 990
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 3 cut(s) 64, 199, 1133
BglII AGATCT 1 cut(s) 713
BisI GCNGC 5 cut(s) 37, 310, 613, 1037, 1128
BlnI CCTAGG 2 cut(s) 275, 479
BlsI GCNGC 5 cut(s) 38, 311, 614, 1038, 1129
BmcAI AGTACT 1 cut(s) 985
Bme1390I CCNGG 2 cut(s) 200, 909
BmiI GGNNCC 2 cut(s) 197, 608
BmrFI CCNGG 2 cut(s) 200, 909
BmrI ACTGGG 2 cut(s) 799, 1069
BmsI GCATC 1 cut(s) 712
BmtI GCTAGC 1 cut(s) 935
BmuI ACTGGG 2 cut(s) 799, 1069
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 4 cut(s) 98, 275, 390, 479
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 908
Bse1I ACTGG 2 cut(s) 805, 1064
BseBI CCWGG 1 cut(s) 909
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 4 cut(s) 98, 275, 390, 479
BseLI CCNNNNNNNGG 2 cut(s) 396, 908
BseMII CTCAG 1 cut(s) 1362
BseNI ACTGG 2 cut(s) 805, 1064
BseRI GAGGAG 1 cut(s) 1020
BseXI GCAGC 5 cut(s) 48, 321, 624, 1048, 1139
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 2 cut(s) 32, 777
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 720
BsiEI CGRYCG 1 cut(s) 1113
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 396, 908
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 32, 777
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 1360
Bsp143I GATC 5 cut(s) 548, 713, 923, 952, 1339
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 3 cut(s) 610, 1027, 1274
BspANI GGCC 2 cut(s) 32, 777
BspCNI CTCAG 1 cut(s) 1363
BspDI ATCGAT 1 cut(s) 720
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 197, 608
BspOI GCTAGC 1 cut(s) 935
BspPI GGATC 2 cut(s) 556, 918
BspQI GCTCTTC 2 cut(s) 8, 729
BspT104I TTCGAA 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 805, 1064
BssECI CCNNGG 4 cut(s) 98, 275, 390, 479
BssMI GATC 5 cut(s) 548, 713, 923, 952, 1339
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 4 cut(s) 98, 275, 390, 479
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 3 cut(s) 490, 881, 1299
Bst6I CTCTTC 4 cut(s) 8, 21, 729, 1089
BstACI GRCGYC 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 864
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 34, 933
BstDEI CTNAG 3 cut(s) 345, 354, 1371
BstDSI CCRYGG 1 cut(s) 98
BstEII GGTNACC 1 cut(s) 431
BstH2I RGCGCY 3 cut(s) 64, 199, 1133
BstHHI GCGC 5 cut(s) 20, 63, 198, 309, 1132
BstKTI GATC 5 cut(s) 551, 716, 926, 955, 1342
BstMBI GATC 5 cut(s) 548, 713, 923, 952, 1339
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 4 cut(s) 864, 873, 1026, 1042
BstNI CCWGG 1 cut(s) 909
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 198, 907
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 5 cut(s) 48, 321, 624, 1048, 1139
BstX2I RGATCY 3 cut(s) 548, 713, 923
BstYI RGATCY 3 cut(s) 548, 713, 923
Bsu15I ATCGAT 1 cut(s) 720
BsuRI GGCC 2 cut(s) 32, 777
BsuTUI ATCGAT 1 cut(s) 720
BtgI CCRYGG 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 34, 933
CciI TCATGA 1 cut(s) 123
CfoI GCGC 5 cut(s) 20, 63, 198, 309, 1132
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 3 cut(s) 36, 551, 1026
Csp6I GTAC 2 cut(s) 525, 984
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 5 cut(s) 99, 124, 437, 1040, 1082
CviJI RGCY 8 cut(s) 32, 344, 739, 777, 876, 931, 935, 1358
CviKI_1 RGCY 8 cut(s) 32, 344, 739, 777, 876, 931, 935, 1358
CviQI GTAC 2 cut(s) 525, 984
DdeI CTNAG 3 cut(s) 345, 354, 1371
DinI GGCGCC 1 cut(s) 197
DpnI GATC 5 cut(s) 550, 715, 925, 954, 1341
DpnII GATC 5 cut(s) 548, 713, 923, 952, 1339
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 4 cut(s) 8, 21, 729, 1089
EarI CTCTTC 4 cut(s) 8, 21, 729, 1089
Eco130I CCWWGG 4 cut(s) 98, 275, 390, 479
Eco24I GRGCYC 1 cut(s) 1360
Eco47III AGCGCT 2 cut(s) 62, 1131
Eco57I CTGAAG 2 cut(s) 725, 960
Eco91I GGTNACC 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 4 cut(s) 98, 275, 390, 479
EcoT38I GRGCYC 1 cut(s) 1360
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
ErhI CCWWGG 4 cut(s) 98, 275, 390, 479
FaeI CATG 5 cut(s) 102, 127, 440, 1043, 1085
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 1 cut(s) 462
FatI CATG 5 cut(s) 98, 123, 436, 1039, 1081
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 5 cut(s) 37, 310, 613, 1037, 1128
FriOI GRGCYC 1 cut(s) 1360
Fsp4HI GCNGC 5 cut(s) 37, 310, 613, 1037, 1128
FspBI CTAG 7 cut(s) 276, 324, 480, 825, 932, 981, 990
GlaI GCGC 5 cut(s) 19, 62, 197, 308, 1131
GluI GCNGC 5 cut(s) 37, 310, 613, 1037, 1128
HaeII RGCGCY 3 cut(s) 64, 199, 1133
HaeIII GGCC 2 cut(s) 32, 777
HapII CCGG 1 cut(s) 200
HgaI GACGC 3 cut(s) 36, 551, 1026
HhaI GCGC 5 cut(s) 20, 63, 198, 309, 1132
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 5 cut(s) 102, 127, 440, 1043, 1085
Hin6I GCGC 5 cut(s) 18, 61, 196, 307, 1130
HinP1I GCGC 5 cut(s) 18, 61, 196, 307, 1130
HincII GTYRAC 2 cut(s) 832, 970
HindII GTYRAC 2 cut(s) 832, 970
HinfI GANTC 8 cut(s) 80, 350, 358, 455, 557, 828, 833, 1156
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 1 cut(s) 200
HphI GGTGA 5 cut(s) 425, 462, 644, 696, 793
Hpy166II GTNNAC 5 cut(s) 589, 801, 832, 970, 1013
Hpy188I TCNGA 7 cut(s) 117, 570, 744, 784, 940, 1161, 1339
Hpy188III TCNNGA 5 cut(s) 124, 404, 1002, 1175, 1370
Hpy8I GTNNAC 5 cut(s) 589, 801, 832, 970, 1013
Hpy99I CGWCG 4 cut(s) 52, 410, 1020, 1165
HpyAV CCTTC 4 cut(s) 390, 422, 748, 767
HpyCH4III ACNGT 3 cut(s) 490, 881, 1299
HpyCH4IV ACGT 1 cut(s) 1333
HpyCH4V TGCA 5 cut(s) 687, 761, 858, 867, 1209
HpyF10VI GCNNNNNNNGC 4 cut(s) 864, 873, 1026, 1042
HpyF3I CTNAG 3 cut(s) 345, 354, 1371
HpySE526I ACGT 1 cut(s) 1333
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 5 cut(s) 102, 127, 440, 1043, 1085
HspAI GCGC 5 cut(s) 18, 61, 196, 307, 1130
KasI GGCGCC 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 5 cut(s) 548, 713, 923, 952, 1339
LguI GCTCTTC 2 cut(s) 8, 729
LmnI GCTCC 2 cut(s) 68, 341
Lsp1109I GCAGC 5 cut(s) 48, 321, 624, 1048, 1139
LweI GCATC 1 cut(s) 712
MaeI CTAG 7 cut(s) 276, 324, 480, 825, 932, 981, 990
MaeII ACGT 1 cut(s) 1333
MaeIII GTNAC 3 cut(s) 431, 468, 632
MalI GATC 5 cut(s) 550, 715, 925, 954, 1341
MboI GATC 5 cut(s) 548, 713, 923, 952, 1339
MflI RGATCY 3 cut(s) 548, 713, 923
MhlI GDGCHC 1 cut(s) 1360
MluCI AATT 8 cut(s) 71, 159, 182, 224, 246, 789, 1105, 1198
Mly113I GGCGCC 1 cut(s) 196
MlyI GAGTC 5 cut(s) 74, 344, 827, 837, 1165
MmeI TCCRAC 2 cut(s) 1071, 1184
MroXI GAANNNNTTC 2 cut(s) 738, 1333
MseI TTAA 7 cut(s) 189, 788, 812, 947, 969, 1146, 1292
MslI CAYNNNNRTG 1 cut(s) 1193
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 200, 909
MvaI CCWGG 1 cut(s) 909
MwoI GCNNNNNNNGC 4 cut(s) 864, 873, 1026, 1042
NarI GGCGCC 1 cut(s) 196
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 1 cut(s) 98
NdeII GATC 5 cut(s) 548, 713, 923, 952, 1339
NheI GCTAGC 1 cut(s) 931
NlaIII CATG 5 cut(s) 102, 127, 440, 1043, 1085
NlaIV GGNNCC 2 cut(s) 197, 608
NmuCI GTSAC 3 cut(s) 431, 468, 632
NspV TTCGAA 1 cut(s) 361
PagI TCATGA 1 cut(s) 123
PciSI GCTCTTC 2 cut(s) 8, 729
PdmI GAANNNNTTC 2 cut(s) 738, 1333
PfeI GAWTC 3 cut(s) 358, 455, 557
PkrI GCNGC 5 cut(s) 38, 311, 614, 1038, 1129
PleI GAGTC 5 cut(s) 74, 344, 827, 836, 1164
PluTI GGCGCC 1 cut(s) 199
PpsI GAGTC 5 cut(s) 74, 344, 827, 836, 1164
Psp1406I AACGTT 1 cut(s) 1333
Psp6I CCWGG 1 cut(s) 907
PspEI GGTNACC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 2 cut(s) 197, 608
PsrI GAACNNNNNNTAC 2 cut(s) 976, 1008
PsuI RGATCY 3 cut(s) 548, 713, 923
RsaI GTAC 2 cut(s) 526, 985
RsaNI GTAC 2 cut(s) 525, 984
RseI CAYNNNNRTG 1 cut(s) 1193
SalI GTCGAC 1 cut(s) 830
SapI GCTCTTC 2 cut(s) 8, 729
SaqAI TTAA 7 cut(s) 189, 788, 812, 947, 969, 1146, 1292
SatI GCNGC 5 cut(s) 37, 310, 613, 1037, 1128
Sau3AI GATC 5 cut(s) 548, 713, 923, 952, 1339
ScaI AGTACT 1 cut(s) 985
SchI GAGTC 5 cut(s) 74, 344, 827, 837, 1165
ScrFI CCNGG 2 cut(s) 200, 909
SduI GDGCHC 1 cut(s) 1360
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 552
SfoI GGCGCC 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 1193
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 8 cut(s) 71, 159, 182, 224, 246, 789, 1105, 1198
SsiI CCGC 3 cut(s) 610, 1027, 1274
SspDI GGCGCC 1 cut(s) 195
SspI AATATT 1 cut(s) 1267
SspMI CTAG 7 cut(s) 276, 324, 480, 825, 932, 981, 990
StyD4I CCNGG 2 cut(s) 198, 907
StyI CCWWGG 4 cut(s) 98, 275, 390, 479
TaaI ACNGT 3 cut(s) 490, 881, 1299
TaiI ACGT 1 cut(s) 1336
TaqI TCGA 6 cut(s) 69, 150, 361, 597, 720, 831
TaqII GACCGA 1 cut(s) 1099
TasI AATT 8 cut(s) 71, 159, 182, 224, 246, 789, 1105, 1198
TatI WGTACW 1 cut(s) 983
TfiI GAWTC 3 cut(s) 358, 455, 557
Tru1I TTAA 7 cut(s) 189, 788, 812, 947, 969, 1146, 1292
Tru9I TTAA 7 cut(s) 189, 788, 812, 947, 969, 1146, 1292
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 3 cut(s) 431, 468, 632
TseI GCWGC 5 cut(s) 36, 309, 612, 1036, 1127
Tsp45I GTSAC 3 cut(s) 431, 468, 632
TspDTI ATGAA 6 cut(s) 20, 140, 441, 744, 1092, 1211
TspGWI ACGGA 3 cut(s) 839, 1178, 1205
TspRI CASTG 1 cut(s) 535
XapI RAATTY 4 cut(s) 71, 224, 1105, 1198
XmaJI CCTAGG 2 cut(s) 275, 479
XmiI GTMKAC 1 cut(s) 831
XmnI GAANNNNTTC 2 cut(s) 738, 1333
XspI CTAG 7 cut(s) 276, 324, 480, 825, 932, 981, 990
ZrmI AGTACT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.