MD05G1277900.v1.1

Phospholipase A1-Igamma1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0009590
Physical Location & Seq
Reverse (-)
41254017 .. 41254232
216 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1277900.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGGAGTTAAGACATTAAGAGTTGTGGTTAAACAAGACATGGTTCCAAAAATGCCAGGCCTTGTTTTGAATGAAAGTCTTCAGATGTTTGATGACATTACGGGCACATTGGATTGGGTTTACACACATATTGGAGCTGAATTGAAGTTCGAAGTTGGTTCTTCGCCTTATCTCAAGCGTGGCGGGTTCAATCTGCAAGGGTTTCATAGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

72

Amino Acids

7.94

Weight (kDa)

6.71

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 65
AgsI TTSAA 3 cut(s) 70, 145, 190
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AoxI GGCC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 107
BshFI GGCC 1 cut(s) 60
BsnI GGCC 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 107
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 150
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 60
CviAII CATG 1 cut(s) 40
CviJI RGCY 3 cut(s) 60, 137, 210
CviKI_1 RGCY 3 cut(s) 60, 137, 210
Eco147I AGGCCT 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 129, 207
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 214
HaeIII GGCC 1 cut(s) 60
Hin1II CATG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 196
Hsp92II CATG 1 cut(s) 43
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 2 cut(s) 42, 69
MaeI CTAG 1 cut(s) 214
MboII GAAGA 2 cut(s) 71, 153
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 3 cut(s) 9, 17, 30
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 45
NspV TTCGAA 1 cut(s) 150
PceI AGGCCT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 9, 17, 30
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 107
SetI ASST 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 140
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 214
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 55
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 140
Tru1I TTAA 3 cut(s) 9, 17, 30
Tru9I TTAA 3 cut(s) 9, 17, 30
TspDTI ATGAA 2 cut(s) 87, 194
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.