Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009374

Physical Location & Seq

Genomic Coordinates Reverse (-)

7392678 .. 7393565

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1052100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAGGGAAAAGGGCTTCGACCGATCGCCCACCATGTGTACGGATAAGTGGCGGAACTTGCTCAAGGAGTTCAAGAAGGCTCGCCACCAAGTTAAAGTCGGTGCTCGTTCTGCTAAGATGTCTTATTACGAGGACCTCCAGGACTTGCTCAGAGATCCCTCCACCAATTCTAACTCCACCACCGTCAACAGCAACCACAATTCTGTTTCTGCTGCCATCGCCGCCGTTGCCACTCCTCCCAAGTTAGATTCTTTTGTTCGATTTTCTGATAAAGGTCTTGAGGATTCAACTATTCCATTTGGGCCTATGGAAGCTAATGACCGATCGGCGCTCAATTTGGAGAGGCAGCTGGATCACGACGGCGGTGACCCGCTTGCTATTACTGCAGCGGATGCGGTTGCAGTCAATGGGGACCACTCTTCTTACTGTGGAAGGATTATAACTGTCAAATTGGGGGAATACACCAGAAGGATTGGAATTGATGGGACTGGTGAAGCAATTAAGGAGGCGATCAAGTCTGCGTTCAGAATAAGAACTAAGCGGGCATTTTGGTTGGAGGACGAAGATCAGGTTGTTCGAAGTCTTGATAGGGATATGCCTTTGGGAAATTACACTCTCCACCTTGATGAAGGAATTACAATCAAACTTTGCCTCTACGATGACTCTGACCGCATAGTTCGAACTGAAGAAATAACATTATACACTGAGGATGATTTTCGTGATTTTCTTGCACGCCGAAGCTTGATGGGTTTAAGAGAGTTAAGTGGCTACAGACGCATCGATACTTTAGATGATCTTCATTCTGGTGCAATGTACCAGGGGGTGCGACTTTTGGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

281

Amino Acids

31.59

Weight (kDa)

5.62

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	1 - 49	6.2e-09	Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1	PF26214	145 - 205	1.1e-09	GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1	PF26214	210 - 274	1.3e-28	GT-1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT1G13450 AT1G13450
fragaria_vesca	FvH4_6g52740
malus_domestica	MD06G1052100.v1.1 MD17G1017400.v1.1
prunus_persica	Prupe.3G300500_v2.0.a1
pyrus_communis	pycom06g06930 pycom16g09330 pycom17g01400
rosa_chinensis	RchiOBHm_Chr2g0174361
rosa_laevigata	RLG00000022260
rosa_multiflora	Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031
rosa_roxburghii	Rroxscaffold_2G00078270
rosa_rugosa	Rorug02G0576400
rosa_samantha	Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000
rosa_wichuraiana	Rw2G053840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AciI	CCGC	8 cut(s)	52, 222, 363, 371, 389, 395, 541, 670
AclWI	GGATC	2 cut(s)	149, 360
AcuI	CTGAAG	1 cut(s)	705
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	40, 815
AgsI	TTSAA	2 cut(s)	73, 288
AjnI	CCWGG	2 cut(s)	138, 816
AluBI	AGCT	3 cut(s)	314, 349, 741
AluI	AGCT	3 cut(s)	314, 349, 741
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	149, 360
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	212, 346, 386
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	133, 302, 412
AsuHPI	GGTGA	2 cut(s)	377, 503
AsuII	TTCGAA	2 cut(s)	577, 679
AvaII	GGWCC	2 cut(s)	133, 412
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	199, 358, 398
BccI	CCATC	3 cut(s)	224, 476, 739
BceAI	ACGGC	2 cut(s)	209, 376
BciT130I	CCWGG	2 cut(s)	140, 818
BfmI	CTRYAG	2 cut(s)	384, 769
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	4 cut(s)	213, 222, 347, 387
BlsI	GCNGC	4 cut(s)	214, 223, 348, 388
Bme1390I	CCNGG	2 cut(s)	140, 818
Bme18I	GGWCC	2 cut(s)	133, 412
BmgT120I	GGNCC	3 cut(s)	133, 302, 412
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	140, 818
BmsI	GCATC	2 cut(s)	382, 786
BpmI	CTGGAG	1 cut(s)	122
Bpu14I	TTCGAA	2 cut(s)	577, 679
BpuEI	CTTGAG	2 cut(s)	47, 299
Bsa29I	ATCGAT	1 cut(s)	780
BsaJI	CCNNGG	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	140, 818
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	817
BseGI	GGATG	2 cut(s)	397, 715
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	163, 696
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	199, 358, 398
Bsh1285I	CGRYCG	3 cut(s)	22, 26, 326
BshFI	GGCC	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	780
BsiEI	CGRYCG	3 cut(s)	22, 26, 326
BsiHKAI	GWGCWC	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	425, 499
BsmFI	GGGAC	2 cut(s)	425, 499
BsnI	GGCC	1 cut(s)	304
Bsp119I	TTCGAA	2 cut(s)	577, 679
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
BspACI	CCGC	8 cut(s)	52, 222, 363, 371, 389, 395, 541, 670
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	162, 697
BspDI	ATCGAT	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	413
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	2 cut(s)	149, 360
BspT104I	TTCGAA	2 cut(s)	577, 679
BsrDI	GCAATG	1 cut(s)	816
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	817
BssMI	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
Bst2UI	CCWGG	2 cut(s)	140, 818
Bst4CI	ACNGT	3 cut(s)	184, 428, 445
Bst6I	CTCTTC	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBI	TTCGAA	2 cut(s)	577, 679
BstC8I	GCNNGC	4 cut(s)	82, 375, 543, 733
BstDEI	CTNAG	4 cut(s)	114, 149, 537, 705
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	397, 715
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	7 cut(s)	26, 157, 326, 355, 513, 568, 796
BstMBI	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
BstMCI	CGRYCG	3 cut(s)	22, 26, 326
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 110, 218, 221, 227, 383, 392, 774
BstNI	CCWGG	2 cut(s)	140, 818
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	138, 816
BstSFI	CTRYAG	2 cut(s)	384, 769
BstV1I	GCAGC	3 cut(s)	199, 358, 398
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	780
BsuRI	GGCC	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	780
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	397, 715
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	4 cut(s)	82, 375, 543, 733
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	3 cut(s)	133, 302, 412
ClaI	ATCGAT	1 cut(s)	780
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	39, 814
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	7 cut(s)	15, 80, 304, 314, 349, 741, 768
CviKI_1	RGCY	7 cut(s)	15, 80, 304, 314, 349, 741, 768
CviQI	GTAC	2 cut(s)	39, 814
DdeI	CTNAG	4 cut(s)	114, 149, 537, 705
DpnI	GATC	7 cut(s)	25, 156, 325, 354, 512, 567, 795
DpnII	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
DraIII	CACNNNGTG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
EciI	GGCGGA	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	133, 412
Eco57I	CTGAAG	1 cut(s)	705
Eco91I	GGTNACC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	138, 816
FaeI	CATG	1 cut(s)	37
FaiI	YATR	6 cut(s)	35, 308, 440, 596, 674, 700
FaqI	GGGAC	2 cut(s)	425, 499
FatI	CATG	1 cut(s)	33
FauI	CCCGC	2 cut(s)	378, 534
Fnu4HI	GCNGC	4 cut(s)	213, 222, 347, 387
FokI	GGATG	2 cut(s)	404, 722
Fsp4HI	GCNGC	4 cut(s)	213, 222, 347, 387
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	4 cut(s)	213, 222, 347, 387
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	304
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	3 cut(s)	248, 284, 662
HphI	GGTGA	2 cut(s)	377, 503
Hpy166II	GTNNAC	3 cut(s)	39, 187, 838
Hpy188I	TCNGA	4 cut(s)	152, 268, 527, 667
Hpy188III	TCNNGA	5 cut(s)	73, 278, 356, 584, 719
Hpy8I	GTNNAC	3 cut(s)	39, 187, 838
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	4 cut(s)	70, 426, 462, 623
HpyCH4III	ACNGT	3 cut(s)	184, 428, 445
HpyCH4V	TGCA	4 cut(s)	386, 401, 731, 809
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 110, 218, 221, 227, 383, 392, 774
HpyF3I	CTNAG	4 cut(s)	114, 149, 537, 705
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
LpnPI	CCDG	9 cut(s)	125, 152, 335, 474, 478, 554, 789, 803, 830
Lsp1109I	GCAGC	3 cut(s)	199, 358, 398
LweI	GCATC	2 cut(s)	382, 786
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	7 cut(s)	25, 156, 325, 354, 512, 567, 795
MboI	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
MboII	GAAGA	4 cut(s)	411, 575, 698, 788
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	8 cut(s)	166, 199, 334, 449, 477, 498, 607, 633
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	534
MseI	TTAA	4 cut(s)	93, 501, 752, 761
MslI	CAYNNNNRTG	2 cut(s)	624, 804
MspA1I	CMGCKG	2 cut(s)	349, 389
MspR9I	CCNGG	2 cut(s)	140, 818
MvaI	CCWGG	2 cut(s)	140, 818
MwoI	GCNNNNNNNGC	8 cut(s)	58, 110, 218, 221, 227, 383, 392, 774
NdeII	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	365
NspV	TTCGAA	2 cut(s)	577, 679
PfeI	GAWTC	2 cut(s)	248, 284
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	214, 223, 348, 388
Ple19I	CGATCG	2 cut(s)	26, 326
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	138, 816
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	138, 816
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	3 cut(s)	133, 302, 412
PspPPI	RGGWCCY	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	154
PvuI	CGATCG	2 cut(s)	26, 326
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	40, 815
RsaNI	GTAC	2 cut(s)	39, 814
RseI	CAYNNNNRTG	2 cut(s)	624, 804
SaqAI	TTAA	4 cut(s)	93, 501, 752, 761
SatI	GCNGC	4 cut(s)	213, 222, 347, 387
Sau3AI	GATC	7 cut(s)	23, 154, 323, 352, 510, 565, 793
Sau96I	GGNCC	3 cut(s)	133, 302, 412
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	140, 818
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	7 cut(s)	138, 277, 316, 351, 573, 624, 743
SfaNI	GCATC	2 cut(s)	382, 786
SfcI	CTRYAG	2 cut(s)	384, 769
SfuI	TTCGAA	2 cut(s)	577, 679
SinI	GGWCC	2 cut(s)	133, 412
SmiMI	CAYNNNNRTG	2 cut(s)	624, 804
SmlI	CTYRAG	2 cut(s)	62, 278
SmoI	CTYRAG	2 cut(s)	62, 278
Sse9I	AATT	8 cut(s)	166, 199, 334, 449, 477, 498, 607, 633
SsiI	CCGC	8 cut(s)	52, 222, 363, 371, 389, 395, 541, 670
StyD4I	CCNGG	2 cut(s)	138, 816
TaaI	ACNGT	3 cut(s)	184, 428, 445
TaqI	TCGA	5 cut(s)	18, 259, 577, 679, 780
TaqII	GACCGA	2 cut(s)	36, 336
TasI	AATT	8 cut(s)	166, 199, 334, 449, 477, 498, 607, 633
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	248, 284
Tru1I	TTAA	4 cut(s)	93, 501, 752, 761
Tru9I	TTAA	4 cut(s)	93, 501, 752, 761
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	212, 346, 386
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	642, 788
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	133, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.