Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8108256.1

Orthogroup ID

OG0009374

Physical Location & Seq

Genomic Coordinates Forward (+)

108 .. 608

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8108256.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgtatttgtcggaaaagcctcacccggttgattttcacaaaggggacgaaggcggcgaggacatgatgattgaggtggttccgaatgaggatgcttcccaaacccatcaccggaatcatcagcagcatcaccaattgctgctattgggggacagcagcggcagtggggaggaccacgaagctaataagccccagaaaaagagagccgaaacttgggtgcaggatgagactcggagtttgatagccctgcgccgagaaatggacagcatgttcaacacttccaagtccaacaagcacttgtgggagcagatttcggcgaaaatgagggagaaagggttcgaccgcaatcccaatatgtgcactgacaagtggaggaacttgcttaaggagttcaagaaggccaagcataatcatgaccgggggagtggctccgctaagatgtcatattataaagagattgaggagattttgaaagaaagaaacaagaatggtcagtacaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

167

Amino Acids

19.62

Weight (kDa)

7.9

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT1G13450 AT1G13450
fragaria_vesca	FvH4_6g52740
malus_domestica	MD06G1052100.v1.1 MD17G1017400.v1.1
prunus_persica	Prupe.3G300500_v2.0.a1
pyrus_communis	pycom06g06930 pycom16g09330 pycom17g01400
rosa_chinensis	RchiOBHm_Chr2g0174361
rosa_laevigata	RLG00000022260
rosa_multiflora	Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031
rosa_roxburghii	Rroxscaffold_2G00078270
rosa_rugosa	Rorug02G0576400
rosa_samantha	Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000
rosa_wichuraiana	Rw2G053840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AciI	CCGC	4 cut(s)	54, 159, 343, 432
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	111, 213, 259
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	274, 394, 472
AloI	GAACNNNNNNTCC	4 cut(s)	254, 286, 320, 352
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	399
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	3 cut(s)	124, 139, 156
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	2 cut(s)	26, 419
AsuHPI	GGTGA	3 cut(s)	14, 101, 122
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	126, 136, 168
BccI	CCATC	1 cut(s)	114
BcnI	CCSGG	2 cut(s)	26, 419
BcoDI	GTCTC	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	5 cut(s)	55, 125, 140, 157, 160
BlsI	GCNGC	5 cut(s)	56, 126, 141, 158, 161
Bme1390I	CCNGG	2 cut(s)	26, 419
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	81, 430
BmrFI	CCNGG	2 cut(s)	26, 419
BmsI	GCATC	2 cut(s)	82, 136
BpuMI	CCSGG	2 cut(s)	26, 419
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 213, 259
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	2 cut(s)	97, 229
BseLI	CCNNNNNNNGG	3 cut(s)	111, 213, 259
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	126, 136, 168
BsgI	GTGCAG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	26, 112, 418
BslFI	GGGAC	2 cut(s)	59, 164
BslI	CCNNNNNNNGG	3 cut(s)	111, 213, 259
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	59, 164
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	362
BspACI	CCGC	4 cut(s)	54, 159, 343, 432
BspANI	GGCC	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	81, 430
BspTI	CTTAAG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	418
BstAFI	CTTAAG	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	97, 229
BstHHI	GCGC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	221
BstMCI	CGRYCG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	24, 417
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	126, 136, 168
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	97, 229
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	169, 360
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	3 cut(s)	64, 268, 413
CviJI	RGCY	7 cut(s)	19, 182, 190, 206, 245, 401, 429
CviKI_1	RGCY	7 cut(s)	19, 182, 190, 206, 245, 401, 429
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	172
FaeI	CATG	3 cut(s)	67, 271, 416
FaiI	YATR	7 cut(s)	65, 269, 356, 408, 414, 445, 450
FaqI	GGGAC	2 cut(s)	59, 164
FatI	CATG	3 cut(s)	63, 267, 412
Fnu4HI	GCNGC	5 cut(s)	55, 125, 140, 157, 160
FokI	GGATG	2 cut(s)	104, 236
Fsp4HI	GCNGC	5 cut(s)	55, 125, 140, 157, 160
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	5 cut(s)	55, 125, 140, 157, 160
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	3 cut(s)	26, 112, 418
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	67, 271, 416
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	115, 229
HpaII	CCGG	3 cut(s)	26, 112, 418
HphI	GGTGA	3 cut(s)	14, 101, 122
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	3 cut(s)	13, 84, 234
Hpy188III	TCNNGA	2 cut(s)	394, 413
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	44, 391
HpyCH4V	TGCA	2 cut(s)	220, 360
HpyF3I	CTNAG	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	67, 271, 416
HspAI	GCGC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	304, 434
LpnPI	CCDG	6 cut(s)	39, 125, 206, 206, 260, 431
Lsp1109I	GCAGC	3 cut(s)	126, 136, 168
LweI	GCATC	2 cut(s)	82, 136
MfeI	CAATTG	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	8 cut(s)	30, 52, 67, 82, 163, 318, 366, 454
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	3 cut(s)	26, 112, 418
MspR9I	CCNGG	2 cut(s)	26, 419
MunI	CAATTG	1 cut(s)	134
NciI	CCSGG	2 cut(s)	26, 419
NlaIII	CATG	3 cut(s)	67, 271, 416
NlaIV	GGNNCC	2 cut(s)	81, 430
NmeAIII	GCCGAG	1 cut(s)	278
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	56, 126, 141, 158, 161
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	81, 430
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	5 cut(s)	55, 125, 140, 157, 160
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	26, 419
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	2 cut(s)	78, 184
SfaNI	GCATC	2 cut(s)	82, 136
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	4 cut(s)	54, 159, 343, 432
StyD4I	CCNGG	2 cut(s)	24, 417
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	2 cut(s)	57, 162
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	169, 367
TseI	GCWGC	3 cut(s)	124, 139, 156
TspRI	CASTG	2 cut(s)	169, 367
Vha464I	CTTAAG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.