Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8252927.1

Orthogroup ID

OG0009374

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8252927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

aacaccagcagcggcggcgaggaccacgaggtccgcgccccgaagaagcgggcggagcattggatccaggaagagacgcggtgcctcatcagcttccgccgcgaggtcgatggcctcttcaacacctccaagtccaacaagcacctctgggagcaaatctcgggcaagatgagggataaagggttcgatcggagccccaccatgtgtacggacaagtggaggaacttgcttaaggagttcaagaaggccaggcagcaggtcaaggtgggcagcaggtctgccaagatgttgtattacgaggacttgcaggagttgattagggataggactagccataataatagtaccaatgctgctaataatgccgctgctgctgcttataagaggcccaattctcctccgaagctcgaatctttcattcgtttctctgataagagtctcgaggacgcaggtattccgtttggacccatggaaggtataagttcgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

163

Amino Acids

18.68

Weight (kDa)

9.51

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT1G13450 AT1G13450
fragaria_vesca	FvH4_6g52740
malus_domestica	MD06G1052100.v1.1 MD17G1017400.v1.1
prunus_persica	Prupe.3G300500_v2.0.a1
pyrus_communis	pycom06g06930 pycom16g09330 pycom17g01400
rosa_chinensis	RchiOBHm_Chr2g0174361
rosa_laevigata	RLG00000022260
rosa_multiflora	Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031
rosa_roxburghii	Rroxscaffold_2G00078270
rosa_rugosa	Rorug02G0576400
rosa_samantha	Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000
rosa_wichuraiana	Rw2G053840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	3 cut(s)	247, 264, 440
AccB1I	GGYRCC	1 cut(s)	81
AccII	CGCG	3 cut(s)	36, 79, 102
AciI	CCGC	9 cut(s)	12, 15, 34, 49, 53, 79, 97, 100, 366
AclWI	GGATC	2 cut(s)	58, 71
AdeI	CACNNNGTG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	208, 346
AfiI	CCNNNNNNNGG	2 cut(s)	103, 473
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	121, 241
AjnI	CCWGG	2 cut(s)	66, 248
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	2 cut(s)	93, 406
AluI	AGCT	2 cut(s)	93, 406
Alw26I	GTCTC	2 cut(s)	68, 443
AlwI	GGATC	2 cut(s)	58, 71
Ama87I	CYCGRG	2 cut(s)	160, 440
AoxI	GGCC	3 cut(s)	112, 246, 386
ApeKI	GCWGC	7 cut(s)	9, 253, 270, 353, 368, 371, 374
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	4 cut(s)	22, 31, 387, 464
AvaI	CYCGRG	2 cut(s)	160, 440
AvaII	GGWCC	3 cut(s)	22, 31, 464
BamHI	GGATCC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	26
BbvI	GCAGC	7 cut(s)	21, 265, 282, 340, 355, 358, 361
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	68, 250
BcoDI	GTCTC	2 cut(s)	68, 443
BfaI	CTAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	230
BfuAI	ACCTGC	3 cut(s)	247, 264, 440
Bme1390I	CCNGG	2 cut(s)	68, 250
Bme18I	GGWCC	3 cut(s)	22, 31, 464
BmeT110I	CYCGRG	2 cut(s)	160, 440
BmgT120I	GGNCC	4 cut(s)	22, 31, 387, 464
BmiI	GGNNCC	4 cut(s)	65, 83, 194, 466
BmrFI	CCNGG	2 cut(s)	68, 250
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 473
BseBI	CCWGG	2 cut(s)	68, 250
BseDI	CCNNGG	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	103, 473
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	7 cut(s)	21, 265, 282, 340, 355, 358, 361
Bsh1236I	CGCG	3 cut(s)	36, 79, 102
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	114, 248, 388
BshNI	GGYRCC	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	160, 440
BslI	CCNNNNNNNGG	2 cut(s)	103, 473
BsmAI	GTCTC	2 cut(s)	68, 443
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	114, 248, 388
BsoBI	CYCGRG	2 cut(s)	160, 440
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	63, 187
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	9 cut(s)	12, 15, 34, 49, 53, 79, 97, 100, 366
BspANI	GGCC	3 cut(s)	114, 248, 388
BspFNI	CGCG	3 cut(s)	36, 79, 102
BspLI	GGNNCC	4 cut(s)	65, 83, 194, 466
BspMI	ACCTGC	3 cut(s)	247, 264, 440
BspPI	GGATC	2 cut(s)	58, 71
BspT107I	GGYRCC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	63, 187
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	68, 250
Bst6I	CTCTTC	2 cut(s)	66, 122
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	468
BstFNI	CGCG	3 cut(s)	36, 79, 102
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	66, 190
BstMAI	GTCTC	2 cut(s)	68, 443
BstMBI	GATC	2 cut(s)	63, 187
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 55, 90, 99, 362, 371, 374
BstNI	CCWGG	2 cut(s)	68, 250
BstSCI	CCNGG	2 cut(s)	66, 248
BstUI	CGCG	3 cut(s)	36, 79, 102
BstV1I	GCAGC	7 cut(s)	21, 265, 282, 340, 355, 358, 361
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	114, 248, 388
BtgI	CCRYGG	1 cut(s)	468
BveI	ACCTGC	3 cut(s)	247, 264, 440
Cac8I	GCNNGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	4 cut(s)	22, 31, 387, 464
CseI	GACGC	2 cut(s)	85, 455
Csp6I	GTAC	2 cut(s)	207, 345
CviAII	CATG	2 cut(s)	202, 469
CviJI	RGCY	7 cut(s)	93, 114, 195, 248, 333, 388, 406
CviKI_1	RGCY	7 cut(s)	93, 114, 195, 248, 333, 388, 406
CviQI	GTAC	2 cut(s)	207, 345
DpnI	GATC	2 cut(s)	65, 189
DpnII	GATC	2 cut(s)	63, 187
DraIII	CACNNNGTG	1 cut(s)	204
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	66, 122
EarI	CTCTTC	2 cut(s)	66, 122
EciI	GGCGGA	2 cut(s)	68, 86
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	3 cut(s)	22, 31, 464
Eco88I	CYCGRG	2 cut(s)	160, 440
EcoRII	CCWGG	2 cut(s)	66, 248
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	205, 472
FaiI	YATR	5 cut(s)	203, 336, 381, 470, 479
FatI	CATG	2 cut(s)	201, 468
FauI	CCCGC	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	37
HaeIII	GGCC	3 cut(s)	114, 248, 388
HgaI	GACGC	2 cut(s)	85, 455
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	205, 472
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	410, 436
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	192, 402, 430
Hpy188III	TCNNGA	2 cut(s)	241, 440
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	238, 467
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 55, 90, 99, 362, 371, 374
Hsp92II	CATG	2 cut(s)	205, 472
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	63, 187
LmnI	GCTCC	3 cut(s)	55, 151, 192
Lsp1109I	GCAGC	7 cut(s)	21, 265, 282, 340, 355, 358, 361
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	65, 189
MboI	GATC	2 cut(s)	63, 187
MboII	GAAGA	3 cut(s)	55, 83, 109
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	159
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	12, 368
MspCI	CTTAAG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	68, 250
MvaI	CCWGG	2 cut(s)	68, 250
MvnI	CGCG	3 cut(s)	36, 79, 102
MwoI	GCNNNNNNNGC	7 cut(s)	15, 55, 90, 99, 362, 371, 374
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	63, 187
NlaIII	CATG	2 cut(s)	205, 472
NlaIV	GGNNCC	4 cut(s)	65, 83, 194, 466
PaeR7I	CTCGAG	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	66
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	66, 248
PspGI	CCWGG	2 cut(s)	66, 248
PspN4I	GGNNCC	4 cut(s)	65, 83, 194, 466
PspPI	GGNCC	4 cut(s)	22, 31, 387, 464
PsuI	RGATCY	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	208, 346
RsaNI	GTAC	2 cut(s)	207, 345
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	63, 187
Sau96I	GGNCC	4 cut(s)	22, 31, 387, 464
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	68, 250
SduI	GDGCHC	1 cut(s)	197
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	3 cut(s)	22, 31, 464
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	230, 440
SmoI	CTYRAG	2 cut(s)	230, 440
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	9 cut(s)	12, 15, 34, 49, 53, 79, 97, 100, 366
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	66, 248
StyI	CCWWGG	1 cut(s)	468
TaqI	TCGA	4 cut(s)	108, 186, 408, 441
TasI	AATT	1 cut(s)	391
TauI	GCSGC	4 cut(s)	15, 18, 102, 368
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	7 cut(s)	9, 253, 270, 353, 368, 371, 374
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	2 cut(s)	224, 447
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	22, 31, 464
XhoI	CTCGAG	1 cut(s)	440
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.