Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009374

Physical Location & Seq

Genomic Coordinates Reverse (-)

6252170 .. 6254778

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTATTTGCCGGAAAAGGCTCGACCAATCGATTTCTACAAAGAGGAAGCCAGCCGGGACATGATGATGGAGGTGGTGGTCTCGAACGAGGACCTTCCCCAATCCCAAGCTCATCTTCACCAGCCGCCGCCGCAACAGATGCTTATGGGTGACAGCAGCGGTGAGGACCACGAAGTGAGGGCGCCGAAGAAGCGAGCCGAGACTTGGGTGCAGGACGAGACCCGAAGCTTAATAGCCCTCCGTCGCGGGATGGACGGCTTGTTCAACACCTCCAAGTCGAACAAGCACTTGTGGGAGCAGATTTCTGCGAAGATGAGAGAGAAAGGGTTTGATCGGTCGCCGACGATGTGCACGGACAAGTGGAGGAACTTGCTGAAAGAGTTCAAGAAGGCCAAGCACCATGATAGGGGAAGTGGGTCAGCTAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAAGGATAGAAGCAAGAATACGCAGTACAAAAGCCCCACTCCCCCAAAGGTCGATTCTTTCGTGCAATTTTCAGATAAAGGTATTGAAGATGCAAGCATTTCATTTGCACCTGTTGAAGGTTCCTTGGTGCGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

199

Amino Acids

22.82

Weight (kDa)

8.52

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT1G13450 AT1G13450
fragaria_vesca	FvH4_6g52740
malus_domestica	MD06G1052100.v1.1 MD17G1017400.v1.1
prunus_persica	Prupe.3G300500_v2.0.a1
pyrus_communis	pycom06g06930 pycom16g09330 pycom17g01400
rosa_chinensis	RchiOBHm_Chr2g0174361
rosa_laevigata	RLG00000022260
rosa_multiflora	Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031
rosa_roxburghii	Rroxscaffold_2G00078270
rosa_rugosa	Rorug02G0576400
rosa_samantha	Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000
rosa_wichuraiana	Rw2G053840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	246
AciI	CCGC	5 cut(s)	125, 128, 131, 159, 246
AcyI	GRCGYC	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	204, 406, 575
AgsI	TTSAA	5 cut(s)	265, 385, 460, 545, 575
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 496, 528
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	110, 228, 422, 594
AluI	AGCT	4 cut(s)	110, 228, 422, 594
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	85, 194, 212
Alw44I	GTGCAC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	390
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	156, 591
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	184, 591
AspS9I	GGNCC	2 cut(s)	91, 166
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	110, 161, 173
AvaII	GGWCC	2 cut(s)	91, 166
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	61, 244
BceAI	ACGGC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	85, 194, 212
BfaI	CTAG	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
BlsI	GCNGC	5 cut(s)	126, 129, 132, 158, 593
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	91, 166
BmgT120I	GGNCC	2 cut(s)	91, 166
BmiI	GGNNCC	2 cut(s)	183, 580
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	129, 538
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	85, 212
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 406, 575
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	204, 406, 575
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	11, 55
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	204, 406, 575
BsmAI	GTCTC	3 cut(s)	85, 194, 212
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	2 cut(s)	85, 212
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	5 cut(s)	125, 128, 131, 159, 246
BspANI	GGCC	1 cut(s)	392
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	183, 580
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	85, 212
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	582
BstACI	GRCGYC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	52, 195, 553
BstDEI	CTNAG	1 cut(s)	423
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	184, 591
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	85, 194, 212
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 139, 190
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	52, 195, 553
CfoI	GCGC	2 cut(s)	184, 591
Cfr13I	GGNCC	2 cut(s)	91, 166
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	2 cut(s)	61, 401
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	2 cut(s)	85, 212
Eco47I	GGWCC	2 cut(s)	91, 166
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	2 cut(s)	64, 404
FaiI	YATR	3 cut(s)	62, 146, 402
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	60, 400
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
FspBI	CTAG	1 cut(s)	595
FspI	TGCGCA	1 cut(s)	590
GlaI	GCGC	2 cut(s)	183, 590
GluI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	11, 55
HhaI	GCGC	2 cut(s)	184, 591
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	64, 404
Hin6I	GCGC	2 cut(s)	182, 589
HinP1I	GCGC	2 cut(s)	182, 589
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	2 cut(s)	11, 55
HphI	GGTGA	3 cut(s)	110, 161, 173
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	2 cut(s)	82, 385
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	2 cut(s)	246, 346
HpyAV	CCTTC	4 cut(s)	104, 382, 454, 569
HpyCH4V	TGCA	5 cut(s)	211, 351, 523, 551, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 139, 190
HpyF3I	CTNAG	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	64, 404
HspAI	GCGC	2 cut(s)	182, 589
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	24, 64, 68, 134, 197, 582
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	129, 538
MaeI	CTAG	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	107, 199, 322, 557
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	524
Mly113I	GGCGCC	1 cut(s)	182
MnlI	CCTC	9 cut(s)	37, 64, 82, 157, 171, 248, 280, 357, 442
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	2 cut(s)	11, 55
MspR9I	CCNGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	130, 139, 190
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	64, 404
NlaIV	GGNNCC	2 cut(s)	183, 580
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	126, 129, 132, 158, 593
PluTI	GGCGCC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	183, 580
PspPI	GGNCC	2 cut(s)	91, 166
PspPPI	RGGWCCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	91, 166
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	129, 538
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	2 cut(s)	91, 166
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	5 cut(s)	125, 128, 131, 159, 246
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	582
TaqI	TCGA	5 cut(s)	22, 30, 83, 278, 510
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	524
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	3 cut(s)	127, 130, 133
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	156, 591
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	2 cut(s)	230, 368
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	91, 166
XagI	CCTNNNNNAGG	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.