Rh2BG668400
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
88042228 .. 88044471
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG668400.1

Sequence Viewer

Length: 1149 bp
ATGTACCTCTCCGAAAAGCCCCACCCAATTGATTTCTACAAGTCCGTCGACGCCTCCTCCTCCCCCGACCGCGACATGATCATGGAGGTCGTCTCCGCCGCCAACGCCGCCGCTCCAGGTGGCAACACCAGCAGCGGCGGCGAGGACCACGAGGTCCGCGCCCCGAAGAAGCGGGCCGAGCATTGGATCCAGGAAGAGACGCGGTGCCTCATCAGCTTCCGCCGCGAGGTCGATGGCCTCTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGCAAATCTCGGGCAAGATGAGGGATAAAGGGTTCGATCGGAGCCCCACCATGTGTACGGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCCAGGCAGCAGGTCAAGGTGGGCAGCAGGTCTGCCAAGATGTTGTATTACGAGGACCTGCAGGAGTTGATTAGGGATAGGACTAGCCATAATAGTACCAATGCTGCTAATAATGCCGGTGCTGCTGCTTATAAGAGGCCGAATTCTCCTCCGAAGCTCGAATCTTTCATTCGTTTCTCTGATAAGAGTCTCGAGGATGCAGGTATTCCGTTTGGACCCATGGAAGCTGACCGAACAGCAGTGGACTTGGAAAGGCAGTTGGATCATGATGGTGACCCTCTGGCTATTACTGCGGCTGAGGCAGTGGCAGCCAACGAGGTTCCTCCGTGGAATTGGAGGGAGGGCCCTGAGAATGGAGGGGAGACACACTCATCTTTTTGTGGAAGGATTATAACTGTCAAGTTGGGGGAATACAACACCAGAAGGATTGGTATTGATGGAACAGCTGATGCGATTAAGGAGGCAATCAAGTCTGCATTCAGCATAAGAACTAAGCGAGCATTTTGGTTGGAGGACGAGTATCAGGTTGTTCGGAGTCTTGATAGGGATATGCCTTTGGGCAATTATACTCTCCACCTTGATGAAGGAATAACCATTAAACTTTGCCTCTGCGATGAATCTGACCGTATAGTTCGCACAGAAGAAATAACATTCTACACTGAGGATGACTTTCGTGATTTCCTTTCACGTCGCGGTTTGATTGGTTTAAGAGAATTAGGTGGCTACAGACGCATTGATACTTTAGATGATCTTCAATCTGGTGCAATGTATCAGGGGTGA

Protein Analysis

382

Amino Acids

43.2

Weight (kDa)

5.65

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 61 - 146 3.7e-21 Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1 PF26214 252 - 313 9.2e-10 GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1 PF26214 318 - 382 1.5e-29 GT-1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 501, 761
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 4 cut(s) 370, 387, 435, 560
AccB1I GGYRCC 1 cut(s) 204
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 48
AccII CGCG 5 cut(s) 72, 159, 202, 225, 1062
AclWI GGATC 3 cut(s) 181, 194, 639
AcsI RAATTY 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 3 cut(s) 5, 331, 466
AfiI CCNNNNNNNGG 3 cut(s) 183, 226, 722
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 3 cut(s) 244, 364, 1124
AjiI CACGTC 1 cut(s) 1058
AjnI CCWGG 3 cut(s) 115, 189, 371
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 4 cut(s) 216, 526, 596, 815
AluI AGCT 4 cut(s) 216, 526, 596, 815
Alw26I GTCTC 4 cut(s) 97, 191, 563, 725
AlwI GGATC 3 cut(s) 181, 194, 639
Ama87I CYCGRG 2 cut(s) 283, 560
AoxI GGCC 5 cut(s) 174, 235, 369, 506, 712
ApaI GGGCCC 1 cut(s) 716
ApeKI GCWGC 7 cut(s) 132, 376, 393, 473, 491, 494, 677
ApoI RAATTY 1 cut(s) 511
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 7 cut(s) 145, 154, 174, 424, 584, 712, 713
AsuHPI GGTGA 1 cut(s) 653
AvaI CYCGRG 2 cut(s) 283, 560
AvaII GGWCC 4 cut(s) 145, 154, 424, 584
BaeGI GKGCMC 1 cut(s) 716
BamHI GGATCC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 2 cut(s) 320, 716
BauI CACGAG 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 7 cut(s) 144, 388, 405, 460, 478, 481, 689
BccI CCATC 3 cut(s) 227, 632, 800
BciT130I CCWGG 3 cut(s) 117, 191, 373
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 4 cut(s) 97, 191, 563, 725
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 2 cut(s) 428, 1093
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 4 cut(s) 370, 387, 435, 560
Bme1390I CCNGG 3 cut(s) 117, 191, 373
Bme18I GGWCC 4 cut(s) 145, 154, 424, 584
BmeT110I CYCGRG 2 cut(s) 283, 560
BmgBI CACGTC 1 cut(s) 1058
BmgT120I GGNCC 7 cut(s) 145, 154, 174, 424, 584, 712, 713
BmiI GGNNCC 6 cut(s) 188, 206, 317, 586, 690, 714
BmrFI CCNGG 3 cut(s) 117, 191, 373
BmsI GCATC 2 cut(s) 556, 808
BplI GAGNNNNNCTC 6 cut(s) 77, 109, 266, 298, 722, 754
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 588, 695
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 872, 902
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 226, 722
Bse118I RCCGGY 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 1140
BseBI CCWGG 3 cut(s) 117, 191, 373
BseDI CCNNGG 2 cut(s) 588, 695
BseGI GGATG 2 cut(s) 571, 1039
BseLI CCNNNNNNNGG 3 cut(s) 183, 226, 722
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 3 cut(s) 657, 708, 1020
BseRI GAGGAG 3 cut(s) 46, 49, 507
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 7 cut(s) 144, 388, 405, 460, 478, 481, 689
Bsh1236I CGCG 5 cut(s) 72, 159, 202, 225, 1062
Bsh1285I CGRYCG 2 cut(s) 70, 313
BshFI GGCC 5 cut(s) 176, 237, 371, 508, 714
BshNI GGYRCC 1 cut(s) 204
BsiEI CGRYCG 2 cut(s) 70, 313
BsiHKCI CYCGRG 2 cut(s) 283, 560
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 3 cut(s) 183, 226, 722
BsmAI GTCTC 4 cut(s) 97, 191, 563, 725
BsmBI CGTCTC 2 cut(s) 97, 191
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 5 cut(s) 176, 237, 371, 508, 714
BsoBI CYCGRG 2 cut(s) 283, 560
Bsp120I GGGCCC 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 320, 716
Bsp143I GATC 5 cut(s) 78, 186, 310, 631, 1117
Bsp19I CCATGG 1 cut(s) 588
BspANI GGCC 5 cut(s) 176, 237, 371, 508, 714
BspCNI CTCAG 3 cut(s) 658, 709, 1021
BspFNI CGCG 5 cut(s) 72, 159, 202, 225, 1062
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 6 cut(s) 188, 206, 317, 586, 690, 714
BspMAI CTGCAG 1 cut(s) 432
BspMI ACCTGC 4 cut(s) 370, 387, 435, 560
BspPI GGATC 3 cut(s) 181, 194, 639
BspT107I GGYRCC 1 cut(s) 204
BspTI CTTAAG 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 1140
BsrFI RCCGGY 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 2 cut(s) 588, 695
BssMI GATC 5 cut(s) 78, 186, 310, 631, 1117
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 3 cut(s) 117, 191, 373
Bst4CI ACNGT 2 cut(s) 766, 995
Bst6I CTCTTC 2 cut(s) 189, 245
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 174, 867
BstDEI CTNAG 4 cut(s) 666, 717, 861, 1029
BstDSI CCRYGG 2 cut(s) 588, 695
BstEII GGTNACC 1 cut(s) 641
BstF5I GGATG 2 cut(s) 571, 1039
BstFNI CGCG 5 cut(s) 72, 159, 202, 225, 1062
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 5 cut(s) 81, 189, 313, 634, 1120
BstMAI GTCTC 4 cut(s) 97, 191, 563, 725
BstMBI GATC 5 cut(s) 78, 186, 310, 631, 1117
BstMCI CGRYCG 2 cut(s) 70, 313
BstNI CCWGG 3 cut(s) 117, 191, 373
BstPI GGTNACC 1 cut(s) 641
BstSCI CCNGG 3 cut(s) 115, 189, 371
BstSFI CTRYAG 2 cut(s) 428, 1093
BstSLI GKGCMC 1 cut(s) 716
BstUI CGCG 5 cut(s) 72, 159, 202, 225, 1062
BstV1I GCAGC 7 cut(s) 144, 388, 405, 460, 478, 481, 689
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 5 cut(s) 176, 237, 371, 508, 714
BtgI CCRYGG 2 cut(s) 588, 695
BtgZI GCGATG 1 cut(s) 996
BtrI CACGTC 1 cut(s) 1058
BtsCI GGATG 2 cut(s) 571, 1039
BtsI GCAGTG 2 cut(s) 615, 678
BtsIMutI CAGTG 3 cut(s) 615, 678, 1026
BveI ACCTGC 4 cut(s) 370, 387, 435, 560
Cac8I GCNNGC 2 cut(s) 174, 867
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 7 cut(s) 145, 154, 174, 424, 584, 712, 713
CseI GACGC 3 cut(s) 59, 208, 1107
Csp6I GTAC 3 cut(s) 4, 330, 465
CviAII CATG 5 cut(s) 76, 82, 325, 589, 635
CviQI GTAC 3 cut(s) 4, 330, 465
DdeI CTNAG 4 cut(s) 666, 717, 861, 1029
DpnI GATC 5 cut(s) 80, 188, 312, 633, 1119
DpnII GATC 5 cut(s) 78, 186, 310, 631, 1117
DraIII CACNNNGTG 1 cut(s) 327
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 189, 245
EarI CTCTTC 2 cut(s) 189, 245
EciI GGCGGA 2 cut(s) 85, 209
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 320, 716
Eco47I GGWCC 4 cut(s) 145, 154, 424, 584
Eco88I CYCGRG 2 cut(s) 283, 560
Eco91I GGTNACC 1 cut(s) 641
EcoO109I RGGNCCY 3 cut(s) 424, 712, 713
EcoO65I GGTNACC 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 115, 189, 371
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 2 cut(s) 320, 716
ErhI CCWWGG 1 cut(s) 588
Esp3I CGTCTC 2 cut(s) 97, 191
FaeI CATG 5 cut(s) 79, 85, 328, 592, 638
FatI CATG 5 cut(s) 75, 81, 324, 588, 634
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 578, 1046
FriOI GRGCYC 2 cut(s) 320, 716
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 5 cut(s) 176, 237, 371, 508, 714
HapII CCGG 1 cut(s) 486
HgaI GACGC 3 cut(s) 59, 208, 1107
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 79, 85, 328, 592, 638
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 4 cut(s) 530, 556, 904, 986
HpaII CCGG 1 cut(s) 486
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 3 cut(s) 49, 330, 613
Hpy188I TCNGA 6 cut(s) 13, 315, 522, 550, 903, 991
Hpy188III TCNNGA 5 cut(s) 364, 560, 635, 908, 1043
Hpy8I GTNNAC 3 cut(s) 49, 330, 613
Hpy99I CGWCG 3 cut(s) 50, 53, 1062
HpyAV CCTTC 4 cut(s) 361, 747, 786, 947
HpyCH4III ACNGT 2 cut(s) 766, 995
HpyCH4IV ACGT 1 cut(s) 1057
HpyCH4V TGCA 4 cut(s) 430, 569, 845, 1133
HpyF3I CTNAG 4 cut(s) 666, 717, 861, 1029
HpySE526I ACGT 1 cut(s) 1057
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 79, 85, 328, 592, 638
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 5 cut(s) 78, 186, 310, 631, 1117
LmnI GCTCC 3 cut(s) 118, 274, 315
Lsp1109I GCAGC 7 cut(s) 144, 388, 405, 460, 478, 481, 689
LweI GCATC 2 cut(s) 556, 808
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 1057
MaeIII GTNAC 1 cut(s) 641
MalI GATC 5 cut(s) 80, 188, 312, 633, 1119
MbiI CCGCTC 1 cut(s) 113
MboI GATC 5 cut(s) 78, 186, 310, 631, 1117
MboII GAAGA 5 cut(s) 178, 206, 232, 1022, 1112
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 320, 716
MluCI AATT 5 cut(s) 27, 511, 700, 931, 1082
MlyI GAGTC 2 cut(s) 565, 913
MmeI TCCRAC 3 cut(s) 282, 609, 858
MseI TTAA 4 cut(s) 354, 825, 966, 1076
MslI CAYNNNNRTG 3 cut(s) 80, 639, 948
MspA1I CMGCKG 2 cut(s) 135, 815
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 3 cut(s) 117, 191, 373
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 3 cut(s) 117, 191, 373
MvnI CGCG 5 cut(s) 72, 159, 202, 225, 1062
NcoI CCATGG 1 cut(s) 588
NdeII GATC 5 cut(s) 78, 186, 310, 631, 1117
NlaIII CATG 5 cut(s) 79, 85, 328, 592, 638
NlaIV GGNNCC 6 cut(s) 188, 206, 317, 586, 690, 714
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 560
PagI TCATGA 1 cut(s) 634
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 2 cut(s) 530, 986
PfoI TCCNGGA 1 cut(s) 189
Ple19I CGATCG 1 cut(s) 313
PleI GAGTC 2 cut(s) 564, 912
PpsI GAGTC 2 cut(s) 564, 912
PpuMI RGGWCCY 1 cut(s) 424
PsiI TTATAA 2 cut(s) 501, 761
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 3 cut(s) 115, 189, 371
PspEI GGTNACC 1 cut(s) 641
PspGI CCWGG 3 cut(s) 115, 189, 371
PspN4I GGNNCC 6 cut(s) 188, 206, 317, 586, 690, 714
PspOMI GGGCCC 1 cut(s) 712
PspPI GGNCC 7 cut(s) 145, 154, 174, 424, 584, 712, 713
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 432
PsuI RGATCY 1 cut(s) 186
PvuI CGATCG 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 5, 331, 466
RsaNI GTAC 3 cut(s) 4, 330, 465
RseI CAYNNNNRTG 3 cut(s) 80, 639, 948
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 354, 825, 966, 1076
Sau3AI GATC 5 cut(s) 78, 186, 310, 631, 1117
Sau96I GGNCC 7 cut(s) 145, 154, 174, 424, 584, 712, 713
SbfI CCTGCAGG 1 cut(s) 432
SchI GAGTC 2 cut(s) 565, 913
ScrFI CCNGG 3 cut(s) 117, 191, 373
SdaI CCTGCAGG 1 cut(s) 432
SduI GDGCHC 2 cut(s) 320, 716
SfaNI GCATC 2 cut(s) 556, 808
SfcI CTRYAG 2 cut(s) 428, 1093
Sfr274I CTCGAG 1 cut(s) 560
SgrDI CGTCGACG 1 cut(s) 47
SinI GGWCC 4 cut(s) 145, 154, 424, 584
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 3 cut(s) 80, 639, 948
SmlI CTYRAG 2 cut(s) 353, 560
SmoI CTYRAG 2 cut(s) 353, 560
Sse8387I CCTGCAGG 1 cut(s) 432
Sse9I AATT 5 cut(s) 27, 511, 700, 931, 1082
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 115, 189, 371
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 766, 995
TaiI ACGT 1 cut(s) 1060
TaqI TCGA 5 cut(s) 48, 231, 309, 528, 561
TaqII GACCGA 1 cut(s) 615
TasI AATT 5 cut(s) 27, 511, 700, 931, 1082
TauI GCSGC 7 cut(s) 101, 110, 113, 138, 141, 225, 665
TfiI GAWTC 2 cut(s) 530, 986
Tru1I TTAA 4 cut(s) 354, 825, 966, 1076
Tru9I TTAA 4 cut(s) 354, 825, 966, 1076
TscAI CASTG 3 cut(s) 615, 678, 1033
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 7 cut(s) 132, 376, 393, 473, 491, 494, 677
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 3 cut(s) 526, 966, 999
TspGWI ACGGA 4 cut(s) 34, 347, 567, 684
TspRI CASTG 3 cut(s) 615, 678, 1033
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 4 cut(s) 145, 154, 424, 584
XapI RAATTY 1 cut(s) 511
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.