pycom17g01400
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
953008 .. 955169
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01400.5

Sequence Viewer

Length: 1251 bp
ATGTACCACTCGGAGAAGCCCCGCGCCGTTGACTTATACAAGGGAGGAGGACTAGAAGAAACGGAGACAGAGATGATGATGGAGGTGGCGGCGGTGAATGGGAGAGCGCCACCTCACCACCAAAACCAAAACGAACGAGAGCAGCAGCAGAGCAGCGGTGGCGAGGGGGAGGAGCAGGAATTGTGTGCGGCTGTGAGCAGCAGAGCAGGAGGCGGTCCAGGCGGTGCCGCCGGGCCGAAGAAACGGGCGGAGACGTGGGTCCAGGAGGAGACCCGGAGCCTGATAGGGTTTAGGAGAGAGGTAGACGGGCTTTTCAACACGTCAAAGTCCAACAGGCACCTGTGGGACCAGATCTCGGCGCGGATGAGGGAAAAGGGCTTCGACCGATCGCCCACCATGTGTACGGACAAGTGGCGGAACTTGCTCAAGGAGTTCAAGAAGGCTCGCCACCAAGTTAAAGTCGGTGCTCGTTCTGCTAAGATGTCTTATTACGAGGACCTCCAGGACTTGCTCAGAGATCGCACCAGCAATTCCAACTCCGCCACCGCCAACAGCAACCACAATTCTGTTTCTGCTGCCGCCGCCGCCGTTGCCACTCCTCCCAAGTTAGATTCTTTCGTTCGATTTTCTGATAAAGGTCTTGAGGATTCAACTATTCCATTTGGGCCTATGGAAGCTAATGACCGATCGGCGCTCAATTTGGAGAGGCAGCTGGATCACGACAGCGGTGACCCGCTTGCTATTACTGCCGCGGATGCAGTTGCAGTCAATGGGGTTCCTCCTTGGAACTGGAGGGAGGGTCCTGAAAATGGAGGGGAGGACCATTCTTCTTACTGTGGAAGGATTATAACTGTTAAATTGGGGGAATACACCAGAAGGATTGGAATTGATGGGACCGGTGAAGCAATTAAGGAGGCGATCAAGTCTGCGTTCAGAATAAGAACTAAGCGGGCATTTTGGTTGGAGGATGAGGATCAGGTTGTTCGAAGTCTTGATAGGGATATGCCTTTGGGAAATTACACTCTCCACCTTGACGAAGGAATTACAATTAAACTTTGCCTCTACGATGACTCTGACCGCATAGTTCGAACTGAAGAAATAACGTTGTACACTGAGGATGATTTTCGTGATTTTCTTGCACGCCGAGGCTTGATGGGTTTGAGAGAGTTAAGTGGCTACAGACGCGTTGATACTTTAGATGATCTTCATTCTGGTGCAATGTACCAGGGGGTGCGACTTCTGGTGGACTGA

Protein Analysis

417

Amino Acids

46.53

Weight (kDa)

5.54

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AccB1I GGYRCC 2 cut(s) 224, 336
AccI GTMKAC 1 cut(s) 303
AccII CGCG 4 cut(s) 24, 361, 752, 1185
AclI AACGTT 1 cut(s) 1103
AclWI GGATC 2 cut(s) 723, 981
AcuI CTGAAG 1 cut(s) 1113
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 4 cut(s) 5, 403, 1109, 1223
AfiI CCNNNNNNNGG 2 cut(s) 355, 809
AflIII ACRYGT 2 cut(s) 318, 1183
AgeI ACCGGT 1 cut(s) 896
AgsI TTSAA 3 cut(s) 316, 436, 651
AjiI CACGTC 2 cut(s) 255, 321
AjnI CCWGG 4 cut(s) 217, 261, 501, 1224
AluBI AGCT 2 cut(s) 677, 712
AluI AGCT 2 cut(s) 677, 712
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 59, 245, 263
AlwI GGATC 2 cut(s) 723, 981
AoxI GGCC 2 cut(s) 233, 665
ApeKI GCWGC 6 cut(s) 142, 145, 153, 198, 575, 709
AsiGI ACCGGT 1 cut(s) 896
AspLEI GCGC 4 cut(s) 26, 109, 361, 694
AspS9I GGNCC 9 cut(s) 215, 233, 259, 346, 496, 665, 800, 820, 894
AsuC2I CCSGG 2 cut(s) 232, 274
AsuHPI GGTGA 4 cut(s) 106, 107, 740, 911
AsuII TTCGAA 2 cut(s) 985, 1087
AvaII GGWCC 7 cut(s) 215, 259, 346, 496, 800, 820, 894
BanI GGYRCC 2 cut(s) 224, 336
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 6 cut(s) 154, 157, 165, 210, 562, 721
BccI CCATC 3 cut(s) 73, 884, 1147
BceAI ACGGC 2 cut(s) 11, 572
BciT130I CCWGG 4 cut(s) 219, 263, 503, 1226
BcnI CCSGG 2 cut(s) 232, 274
BcoDI GTCTC 3 cut(s) 59, 245, 263
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 1177
BfoI RGCGCY 2 cut(s) 110, 695
BglII AGATCT 1 cut(s) 351
Bme1390I CCNGG 6 cut(s) 219, 232, 263, 274, 503, 1226
Bme18I GGWCC 7 cut(s) 215, 259, 346, 496, 800, 820, 894
BmgBI CACGTC 2 cut(s) 255, 321
BmgT120I GGNCC 9 cut(s) 215, 233, 259, 346, 496, 665, 800, 820, 894
BmiI GGNNCC 8 cut(s) 226, 260, 278, 338, 347, 777, 801, 895
BmrFI CCNGG 6 cut(s) 219, 232, 263, 274, 503, 1226
BmsI GCATC 1 cut(s) 745
BoxI GACNNNNGTC 1 cut(s) 257
BpmI CTGGAG 2 cut(s) 485, 811
Bpu14I TTCGAA 2 cut(s) 985, 1087
BpuEI CTTGAG 2 cut(s) 410, 662
BpuMI CCSGG 2 cut(s) 232, 274
BsaBI GATNNNNATC 1 cut(s) 972
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 750, 782, 1144, 1225
BsaWI WCCGGW 1 cut(s) 896
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 809
Bse118I RCCGGY 1 cut(s) 896
Bse1I ACTGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 1224
Bse8I GATNNNNATC 1 cut(s) 972
BseBI CCWGG 4 cut(s) 219, 263, 503, 1226
BseDI CCNNGG 4 cut(s) 750, 782, 1144, 1225
BseGI GGATG 4 cut(s) 369, 760, 973, 1123
BseJI GATNNNNATC 1 cut(s) 972
BseLI CCNNNNNNNGG 2 cut(s) 355, 809
BseMI GCAATG 1 cut(s) 1224
BseMII CTCAG 2 cut(s) 526, 1104
BseNI ACTGG 1 cut(s) 794
BseRI GAGGAG 4 cut(s) 60, 185, 281, 588
BseXI GCAGC 6 cut(s) 154, 157, 165, 210, 562, 721
Bsh1236I CGCG 4 cut(s) 24, 361, 752, 1185
Bsh1285I CGRYCG 3 cut(s) 385, 389, 689
BshFI GGCC 2 cut(s) 235, 667
BshNI GGYRCC 2 cut(s) 224, 336
BshTI ACCGGT 1 cut(s) 896
BsiEI CGRYCG 3 cut(s) 385, 389, 689
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 3 cut(s) 231, 274, 897
BslFI GGGAC 2 cut(s) 359, 907
BslI CCNNNNNNNGG 2 cut(s) 355, 809
BsmAI GTCTC 3 cut(s) 59, 245, 263
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 359, 907
BsnI GGCC 2 cut(s) 235, 667
Bso31I GGTCTC 1 cut(s) 263
Bsp119I TTCGAA 2 cut(s) 985, 1087
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 1107
Bsp143I GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
BspANI GGCC 2 cut(s) 235, 667
BspCNI CTCAG 2 cut(s) 525, 1105
BspFNI CGCG 4 cut(s) 24, 361, 752, 1185
BspLI GGNNCC 8 cut(s) 226, 260, 278, 338, 347, 777, 801, 895
BspPI GGATC 2 cut(s) 723, 981
BspT104I TTCGAA 2 cut(s) 985, 1087
BspT107I GGYRCC 2 cut(s) 224, 336
BspTNI GGTCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 1224
BsrFI RCCGGY 1 cut(s) 896
BsrGI TGTACA 1 cut(s) 1107
BsrI ACTGG 1 cut(s) 794
BssAI RCCGGY 1 cut(s) 896
BssECI CCNNGG 4 cut(s) 750, 782, 1144, 1225
BssMI GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 4 cut(s) 219, 263, 503, 1226
Bst4CI ACNGT 2 cut(s) 836, 853
BstAUI TGTACA 1 cut(s) 1107
BstBI TTCGAA 2 cut(s) 985, 1087
BstC8I GCNNGC 4 cut(s) 445, 738, 951, 1141
BstDEI CTNAG 4 cut(s) 477, 512, 945, 1113
BstDSI CCRYGG 1 cut(s) 750
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 4 cut(s) 369, 760, 973, 1123
BstFNI CGCG 4 cut(s) 24, 361, 752, 1185
BstH2I RGCGCY 2 cut(s) 110, 695
BstHHI GCGC 4 cut(s) 26, 109, 361, 694
BstKTI GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
BstMAI GTCTC 3 cut(s) 59, 245, 263
BstMBI GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
BstMCI CGRYCG 3 cut(s) 385, 389, 689
BstNI CCWGG 4 cut(s) 219, 263, 503, 1226
BstPAI GACNNNNGTC 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 6 cut(s) 217, 230, 261, 272, 501, 1224
BstSFI CTRYAG 1 cut(s) 1177
BstUI CGCG 4 cut(s) 24, 361, 752, 1185
BstV1I GCAGC 6 cut(s) 154, 157, 165, 210, 562, 721
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 235, 667
BtgI CCRYGG 1 cut(s) 750
BtrI CACGTC 2 cut(s) 255, 321
BtsCI GGATG 4 cut(s) 369, 760, 973, 1123
BtsIMutI CAGTG 1 cut(s) 1110
Cac8I GCNNGC 4 cut(s) 445, 738, 951, 1141
CfoI GCGC 4 cut(s) 26, 109, 361, 694
Cfr10I RCCGGY 1 cut(s) 896
Cfr13I GGNCC 9 cut(s) 215, 233, 259, 346, 496, 665, 800, 820, 894
Cfr42I CCGCGG 1 cut(s) 753
CseI GACGC 1 cut(s) 1191
Csp6I GTAC 4 cut(s) 4, 402, 1108, 1222
CspAI ACCGGT 1 cut(s) 896
CviAII CATG 1 cut(s) 397
CviQI GTAC 4 cut(s) 4, 402, 1108, 1222
DdeI CTNAG 4 cut(s) 477, 512, 945, 1113
DpnI GATC 8 cut(s) 353, 388, 519, 688, 717, 920, 975, 1203
DpnII GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
DraIII CACNNNGTG 1 cut(s) 399
EciI GGCGGA 3 cut(s) 263, 430, 529
Eco130I CCWWGG 1 cut(s) 782
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 7 cut(s) 215, 259, 346, 496, 800, 820, 894
Eco57I CTGAAG 1 cut(s) 1113
Eco91I GGTNACC 1 cut(s) 728
EcoO109I RGGNCCY 2 cut(s) 496, 800
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 4 cut(s) 217, 261, 501, 1224
EcoT14I CCWWGG 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 782
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 1 cut(s) 400
FaiI YATR 6 cut(s) 37, 398, 671, 848, 1004, 1082
FaqI GGGAC 2 cut(s) 359, 907
FatI CATG 1 cut(s) 396
FauI CCCGC 3 cut(s) 29, 741, 942
FblI GTMKAC 1 cut(s) 303
FokI GGATG 4 cut(s) 376, 767, 980, 1130
FspBI CTAG 1 cut(s) 53
GlaI GCGC 4 cut(s) 25, 108, 360, 693
GsuI CTGGAG 2 cut(s) 485, 811
HaeII RGCGCY 2 cut(s) 110, 695
HaeIII GGCC 2 cut(s) 235, 667
HapII CCGG 3 cut(s) 231, 274, 897
HgaI GACGC 1 cut(s) 1191
HhaI GCGC 4 cut(s) 26, 109, 361, 694
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 4 cut(s) 24, 107, 359, 692
HinP1I GCGC 4 cut(s) 24, 107, 359, 692
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 611, 647, 1070
HpaII CCGG 3 cut(s) 231, 274, 897
HphI GGTGA 4 cut(s) 106, 107, 740, 911
Hpy166II GTNNAC 5 cut(s) 31, 304, 402, 1110, 1246
Hpy188I TCNGA 5 cut(s) 13, 515, 631, 935, 1075
Hpy188III TCNNGA 6 cut(s) 436, 641, 719, 803, 992, 1127
Hpy8I GTNNAC 5 cut(s) 31, 304, 402, 1110, 1246
HpyAV CCTTC 4 cut(s) 433, 834, 870, 1031
HpyCH4III ACNGT 2 cut(s) 836, 853
HpyCH4IV ACGT 3 cut(s) 254, 320, 1103
HpyCH4V TGCA 4 cut(s) 758, 764, 1139, 1217
HpyF3I CTNAG 4 cut(s) 477, 512, 945, 1113
HpySE526I ACGT 3 cut(s) 254, 320, 1103
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 4 cut(s) 24, 107, 359, 692
KspI CCGCGG 1 cut(s) 753
Kzo9I GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
LmnI GCTCC 2 cut(s) 172, 276
Lsp1109I GCAGC 6 cut(s) 154, 157, 165, 210, 562, 721
LweI GCATC 1 cut(s) 745
MaeI CTAG 1 cut(s) 53
MaeII ACGT 3 cut(s) 254, 320, 1103
MaeIII GTNAC 1 cut(s) 728
MalI GATC 8 cut(s) 353, 388, 519, 688, 717, 920, 975, 1203
MboI GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
MboII GAAGA 5 cut(s) 68, 250, 819, 1106, 1196
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 469
MluI ACGCGT 1 cut(s) 1183
MlyI GAGTC 1 cut(s) 1064
MmeI TCCRAC 3 cut(s) 354, 558, 942
MseI TTAA 5 cut(s) 456, 855, 909, 1050, 1169
MslI CAYNNNNRTG 1 cut(s) 1212
MspA1I CMGCKG 4 cut(s) 156, 712, 726, 752
MspI CCGG 3 cut(s) 231, 274, 897
MspR9I CCNGG 6 cut(s) 219, 232, 263, 274, 503, 1226
MvaI CCWGG 4 cut(s) 219, 263, 503, 1226
MvnI CGCG 4 cut(s) 24, 361, 752, 1185
NciI CCSGG 2 cut(s) 232, 274
NdeII GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 8 cut(s) 226, 260, 278, 338, 347, 777, 801, 895
NmeAIII GCCGAG 2 cut(s) 335, 1169
NmuCI GTSAC 1 cut(s) 728
NspV TTCGAA 2 cut(s) 985, 1087
PfeI GAWTC 2 cut(s) 611, 647
PfoI TCCNGGA 2 cut(s) 261, 501
PinAI ACCGGT 1 cut(s) 896
Ple19I CGATCG 2 cut(s) 389, 689
PleI GAGTC 1 cut(s) 1064
PpsI GAGTC 1 cut(s) 1064
PpuMI RGGWCCY 2 cut(s) 496, 800
PshAI GACNNNNGTC 1 cut(s) 257
PsiI TTATAA 1 cut(s) 848
Psp1406I AACGTT 1 cut(s) 1103
Psp5II RGGWCCY 2 cut(s) 496, 800
Psp6I CCWGG 4 cut(s) 217, 261, 501, 1224
PspEI GGTNACC 1 cut(s) 728
PspGI CCWGG 4 cut(s) 217, 261, 501, 1224
PspN4I GGNNCC 8 cut(s) 226, 260, 278, 338, 347, 777, 801, 895
PspPI GGNCC 9 cut(s) 215, 233, 259, 346, 496, 665, 800, 820, 894
PspPPI RGGWCCY 2 cut(s) 496, 800
PsuI RGATCY 1 cut(s) 351
PvuI CGATCG 2 cut(s) 389, 689
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 4 cut(s) 5, 403, 1109, 1223
RsaNI GTAC 4 cut(s) 4, 402, 1108, 1222
RseI CAYNNNNRTG 1 cut(s) 1212
SacII CCGCGG 1 cut(s) 753
SaqAI TTAA 5 cut(s) 456, 855, 909, 1050, 1169
Sau3AI GATC 8 cut(s) 351, 386, 517, 686, 715, 918, 973, 1201
Sau96I GGNCC 9 cut(s) 215, 233, 259, 346, 496, 665, 800, 820, 894
SchI GAGTC 1 cut(s) 1064
ScrFI CCNGG 6 cut(s) 219, 232, 263, 274, 503, 1226
SduI GDGCHC 1 cut(s) 469
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 1 cut(s) 1177
Sfr303I CCGCGG 1 cut(s) 753
SfuI TTCGAA 2 cut(s) 985, 1087
SgrBI CCGCGG 1 cut(s) 753
SinI GGWCC 7 cut(s) 215, 259, 346, 496, 800, 820, 894
SmiMI CAYNNNNRTG 1 cut(s) 1212
SmlI CTYRAG 2 cut(s) 425, 641
SmoI CTYRAG 2 cut(s) 425, 641
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 6 cut(s) 217, 230, 261, 272, 501, 1224
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 2 cut(s) 836, 853
TaiI ACGT 3 cut(s) 257, 323, 1106
TaqI TCGA 4 cut(s) 381, 622, 985, 1087
TaqII GACCGA 2 cut(s) 399, 699
TatI WGTACW 1 cut(s) 1107
TauI GCSGC 7 cut(s) 92, 191, 230, 581, 584, 587, 752
TfiI GAWTC 2 cut(s) 611, 647
Tru1I TTAA 5 cut(s) 456, 855, 909, 1050, 1169
Tru9I TTAA 5 cut(s) 456, 855, 909, 1050, 1169
TscAI CASTG 1 cut(s) 1117
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 6 cut(s) 142, 145, 153, 198, 575, 709
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 1 cut(s) 1196
TspGWI ACGGA 2 cut(s) 77, 419
TspRI CASTG 1 cut(s) 1117
VpaK11BI GGWCC 7 cut(s) 215, 259, 346, 496, 800, 820, 894
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.