Rw2G053840
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
81529237 .. 81531280
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053840.1

Sequence Viewer

Length: 1179 bp
ATGTACCTCTCCGAAAAGCCCCACCCAATTGATTTCTACAAGTCCGTCGACGCCTCCTCCTCCCCCGACCGCGACATGATCATGGAGGTCGTCTCCGCCGCCGCCGCCGCCAACGCCGCCGCTCCAGGTGGCAACACCAGCAGCGGCGGCGAGGACCACGAGGTCCGCGCCCCGAAGAAGCGGGCCGAGCATTGGATCCAGGAAGAGACGCGGTGCCTCATCAGCTTCCGCCGCGAGGTCGATGGCCTCTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGCAAATCTCGGGCAAGATGAGGGATAAAGGGTTCGATCGGAGCCCCACCATGTGTACGGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCCAGGCAGCAGGTCAAGGTGGGCAGCAGGTCTGCCAAGATGTTGTATTACGAGGACTTGCAGGAGTTGATTAGGGATAGGACTAGCCATAATAATAGTACCAATGCTGCTAATAATGCCGCTGCTGCTGCTTATAAGAGGCCCAATTCTCCTCCGAAGCTCGAATCTTTCATTCGTTTCTCTGATAAGAGTCTCGAGGACGCAGGTATTCCGTTTGGACCCATGGAAGCTGACCGAACAGCAGTGGACTTGGAAAGGCAGTTGGATCATGATGGTGACCCTCTGGCTATTACTGCGGCTGAGGCAGTGGCAGCCAACGAGGTTCCTCCGTGGAATTGGAGGGAGGGCCCTGAGAATGGAGGGGAGACACACTCATCTTTTTGTGGAAGGATTATAACTGTCAAGTTGGGGGAATACAACACCAGAAGGATTGGTATTGATGGAACAGCTGATGCGATTAAGGAGGCAATCAAGTCTGCATTCAGAATAAGAACTAAGCGAGCATTTTGGTTGGAGGACGAGTATCAGGTTGTTCGGAGTCTTGATAGGGATATGCCTTTGGGCAATTATACTCTCCACCTTGATGAAGGAATAACCATTAAACTTTGCCTCTGCGATGAATCTGACCGTATAGTTCGCACAGAAGAAATAACATTCTACACTGAGGATGACTTTCGTGATTTCCTTTCACGTCGCGGCTTGATTGGTTTAAGAGAATTAGGTGGCTACAGACGCATTGATACTTTAGATGATCTTCAATCTGGTGCAATGTATCAGGGGGTGAGACTTCTGGGGGACTAG

Protein Analysis

392

Amino Acids

44.26

Weight (kDa)

5.77

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 64 - 149 3.9e-21 Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1 PF26214 256 - 317 9.6e-10 GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1 PF26214 322 - 386 1.6e-29 GT-1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 513, 773
AasI GACNNNNNNGTC 1 cut(s) 161
Acc36I ACCTGC 3 cut(s) 379, 396, 572
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 48
AccII CGCG 5 cut(s) 72, 168, 211, 234, 1074
AclWI GGATC 3 cut(s) 190, 203, 651
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 336
AfaI GTAC 3 cut(s) 5, 340, 478
AfiI CCNNNNNNNGG 3 cut(s) 192, 235, 734
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 3 cut(s) 253, 373, 1136
AjiI CACGTC 1 cut(s) 1070
AjnI CCWGG 3 cut(s) 124, 198, 380
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 4 cut(s) 225, 538, 608, 827
AluI AGCT 4 cut(s) 225, 538, 608, 827
Alw26I GTCTC 5 cut(s) 97, 200, 575, 737, 1156
AlwI GGATC 3 cut(s) 190, 203, 651
Ama87I CYCGRG 2 cut(s) 292, 572
AoxI GGCC 5 cut(s) 183, 244, 378, 518, 724
ApaI GGGCCC 1 cut(s) 728
ApeKI GCWGC 8 cut(s) 141, 385, 402, 485, 500, 503, 506, 689
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 7 cut(s) 154, 163, 183, 519, 596, 724, 725
AsuHPI GGTGA 2 cut(s) 665, 1171
AvaI CYCGRG 2 cut(s) 292, 572
AvaII GGWCC 3 cut(s) 154, 163, 596
BaeGI GKGCMC 1 cut(s) 728
BamHI GGATCC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 2 cut(s) 329, 728
BauI CACGAG 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 8 cut(s) 153, 397, 414, 472, 487, 490, 493, 701
BccI CCATC 3 cut(s) 236, 644, 812
BciT130I CCWGG 3 cut(s) 126, 200, 382
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 5 cut(s) 97, 200, 575, 737, 1156
BfaI CTAG 2 cut(s) 462, 1177
BfmI CTRYAG 1 cut(s) 1105
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 3 cut(s) 379, 396, 572
Bme1390I CCNGG 3 cut(s) 126, 200, 382
Bme18I GGWCC 3 cut(s) 154, 163, 596
BmeT110I CYCGRG 2 cut(s) 292, 572
BmgBI CACGTC 1 cut(s) 1070
BmgT120I GGNCC 7 cut(s) 154, 163, 183, 519, 596, 724, 725
BmiI GGNNCC 6 cut(s) 197, 215, 326, 598, 702, 726
BmrFI CCNGG 3 cut(s) 126, 200, 382
BmsI GCATC 1 cut(s) 820
BplI GAGNNNNNCTC 6 cut(s) 77, 109, 275, 307, 734, 766
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 600, 707
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 884, 914
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 235, 734
Bse3DI GCAATG 1 cut(s) 1152
BseBI CCWGG 3 cut(s) 126, 200, 382
BseDI CCNNGG 2 cut(s) 600, 707
BseGI GGATG 1 cut(s) 1051
BseLI CCNNNNNNNGG 3 cut(s) 192, 235, 734
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 3 cut(s) 669, 720, 1032
BseRI GAGGAG 3 cut(s) 46, 49, 519
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 8 cut(s) 153, 397, 414, 472, 487, 490, 493, 701
Bsh1236I CGCG 5 cut(s) 72, 168, 211, 234, 1074
Bsh1285I CGRYCG 2 cut(s) 70, 322
BshFI GGCC 5 cut(s) 185, 246, 380, 520, 726
BshNI GGYRCC 1 cut(s) 213
BsiEI CGRYCG 2 cut(s) 70, 322
BsiHKCI CYCGRG 2 cut(s) 292, 572
BslI CCNNNNNNNGG 3 cut(s) 192, 235, 734
BsmAI GTCTC 5 cut(s) 97, 200, 575, 737, 1156
BsmBI CGTCTC 2 cut(s) 97, 200
BsmI GAATGC 1 cut(s) 857
BsnI GGCC 5 cut(s) 185, 246, 380, 520, 726
BsoBI CYCGRG 2 cut(s) 292, 572
Bsp120I GGGCCC 1 cut(s) 724
Bsp1286I GDGCHC 2 cut(s) 329, 728
Bsp143I GATC 5 cut(s) 78, 195, 319, 643, 1129
Bsp19I CCATGG 1 cut(s) 600
BspANI GGCC 5 cut(s) 185, 246, 380, 520, 726
BspCNI CTCAG 3 cut(s) 670, 721, 1033
BspFNI CGCG 5 cut(s) 72, 168, 211, 234, 1074
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 6 cut(s) 197, 215, 326, 598, 702, 726
BspMI ACCTGC 3 cut(s) 379, 396, 572
BspPI GGATC 3 cut(s) 190, 203, 651
BspT107I GGYRCC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 1152
BssECI CCNNGG 2 cut(s) 600, 707
BssMI GATC 5 cut(s) 78, 195, 319, 643, 1129
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 3 cut(s) 126, 200, 382
Bst4CI ACNGT 2 cut(s) 778, 1007
Bst6I CTCTTC 2 cut(s) 198, 254
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 183, 879
BstDEI CTNAG 4 cut(s) 678, 729, 873, 1041
BstDSI CCRYGG 2 cut(s) 600, 707
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 1 cut(s) 1051
BstFNI CGCG 5 cut(s) 72, 168, 211, 234, 1074
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 5 cut(s) 81, 198, 322, 646, 1132
BstMAI GTCTC 5 cut(s) 97, 200, 575, 737, 1156
BstMBI GATC 5 cut(s) 78, 195, 319, 643, 1129
BstMCI CGRYCG 2 cut(s) 70, 322
BstNI CCWGG 3 cut(s) 126, 200, 382
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 124, 198, 380
BstSFI CTRYAG 1 cut(s) 1105
BstSLI GKGCMC 1 cut(s) 728
BstUI CGCG 5 cut(s) 72, 168, 211, 234, 1074
BstV1I GCAGC 8 cut(s) 153, 397, 414, 472, 487, 490, 493, 701
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 5 cut(s) 185, 246, 380, 520, 726
BtgI CCRYGG 2 cut(s) 600, 707
BtgZI GCGATG 1 cut(s) 1008
BtrI CACGTC 1 cut(s) 1070
BtsCI GGATG 1 cut(s) 1051
BtsI GCAGTG 2 cut(s) 627, 690
BtsIMutI CAGTG 3 cut(s) 627, 690, 1038
BveI ACCTGC 3 cut(s) 379, 396, 572
Cac8I GCNNGC 2 cut(s) 183, 879
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 7 cut(s) 154, 163, 183, 519, 596, 724, 725
CseI GACGC 4 cut(s) 59, 217, 587, 1119
Csp6I GTAC 3 cut(s) 4, 339, 477
CviAII CATG 5 cut(s) 76, 82, 334, 601, 647
CviQI GTAC 3 cut(s) 4, 339, 477
DdeI CTNAG 4 cut(s) 678, 729, 873, 1041
DpnI GATC 5 cut(s) 80, 197, 321, 645, 1131
DpnII GATC 5 cut(s) 78, 195, 319, 643, 1129
DraIII CACNNNGTG 1 cut(s) 336
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 2 cut(s) 198, 254
EarI CTCTTC 2 cut(s) 198, 254
EciI GGCGGA 2 cut(s) 85, 218
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 2 cut(s) 329, 728
Eco47I GGWCC 3 cut(s) 154, 163, 596
Eco88I CYCGRG 2 cut(s) 292, 572
Eco91I GGTNACC 1 cut(s) 653
EcoO109I RGGNCCY 2 cut(s) 724, 725
EcoO65I GGTNACC 1 cut(s) 653
EcoRII CCWGG 3 cut(s) 124, 198, 380
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 329, 728
ErhI CCWWGG 1 cut(s) 600
Esp3I CGTCTC 2 cut(s) 97, 200
FaeI CATG 5 cut(s) 79, 85, 337, 604, 650
FatI CATG 5 cut(s) 75, 81, 333, 600, 646
FauI CCCGC 1 cut(s) 174
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 48
FokI GGATG 1 cut(s) 1058
FriOI GRGCYC 2 cut(s) 329, 728
FspBI CTAG 2 cut(s) 462, 1177
GlaI GCGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 5 cut(s) 185, 246, 380, 520, 726
HgaI GACGC 4 cut(s) 59, 217, 587, 1119
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 79, 85, 337, 604, 650
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 4 cut(s) 542, 568, 916, 998
HphI GGTGA 2 cut(s) 665, 1171
Hpy166II GTNNAC 3 cut(s) 49, 339, 625
Hpy188I TCNGA 7 cut(s) 13, 324, 534, 562, 863, 915, 1003
Hpy188III TCNNGA 5 cut(s) 373, 572, 647, 920, 1055
Hpy8I GTNNAC 3 cut(s) 49, 339, 625
Hpy99I CGWCG 3 cut(s) 50, 53, 1074
HpyAV CCTTC 4 cut(s) 370, 759, 798, 959
HpyCH4III ACNGT 2 cut(s) 778, 1007
HpyCH4IV ACGT 1 cut(s) 1069
HpyCH4V TGCA 3 cut(s) 439, 857, 1145
HpyF3I CTNAG 4 cut(s) 678, 729, 873, 1041
HpySE526I ACGT 1 cut(s) 1069
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 79, 85, 337, 604, 650
HspAI GCGC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 5 cut(s) 78, 195, 319, 643, 1129
LmnI GCTCC 3 cut(s) 127, 283, 324
Lsp1109I GCAGC 8 cut(s) 153, 397, 414, 472, 487, 490, 493, 701
LweI GCATC 1 cut(s) 820
MaeI CTAG 2 cut(s) 462, 1177
MaeII ACGT 1 cut(s) 1069
MaeIII GTNAC 1 cut(s) 653
MalI GATC 5 cut(s) 80, 197, 321, 645, 1131
MbiI CCGCTC 1 cut(s) 122
MboI GATC 5 cut(s) 78, 195, 319, 643, 1129
MboII GAAGA 5 cut(s) 187, 215, 241, 1034, 1124
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 329, 728
MluCI AATT 5 cut(s) 27, 523, 712, 943, 1094
MlyI GAGTC 2 cut(s) 577, 925
MmeI TCCRAC 3 cut(s) 291, 621, 870
MseI TTAA 4 cut(s) 363, 837, 978, 1088
MslI CAYNNNNRTG 3 cut(s) 80, 651, 960
MspA1I CMGCKG 3 cut(s) 144, 500, 827
MspCI CTTAAG 1 cut(s) 362
MspR9I CCNGG 3 cut(s) 126, 200, 382
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 857
MvaI CCWGG 3 cut(s) 126, 200, 382
MvnI CGCG 5 cut(s) 72, 168, 211, 234, 1074
NcoI CCATGG 1 cut(s) 600
NdeII GATC 5 cut(s) 78, 195, 319, 643, 1129
NlaIII CATG 5 cut(s) 79, 85, 337, 604, 650
NlaIV GGNNCC 6 cut(s) 197, 215, 326, 598, 702, 726
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 572
PagI TCATGA 1 cut(s) 646
PctI GAATGC 1 cut(s) 857
PfeI GAWTC 2 cut(s) 542, 998
PfoI TCCNGGA 1 cut(s) 198
Ple19I CGATCG 1 cut(s) 322
PleI GAGTC 2 cut(s) 576, 924
PpsI GAGTC 2 cut(s) 576, 924
PsiI TTATAA 2 cut(s) 513, 773
Psp6I CCWGG 3 cut(s) 124, 198, 380
PspEI GGTNACC 1 cut(s) 653
PspGI CCWGG 3 cut(s) 124, 198, 380
PspN4I GGNNCC 6 cut(s) 197, 215, 326, 598, 702, 726
PspOMI GGGCCC 1 cut(s) 724
PspPI GGNCC 7 cut(s) 154, 163, 183, 519, 596, 724, 725
PsuI RGATCY 1 cut(s) 195
PvuI CGATCG 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 3 cut(s) 5, 340, 478
RsaNI GTAC 3 cut(s) 4, 339, 477
RseI CAYNNNNRTG 3 cut(s) 80, 651, 960
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 363, 837, 978, 1088
Sau3AI GATC 5 cut(s) 78, 195, 319, 643, 1129
Sau96I GGNCC 7 cut(s) 154, 163, 183, 519, 596, 724, 725
SchI GAGTC 2 cut(s) 577, 925
ScrFI CCNGG 3 cut(s) 126, 200, 382
SduI GDGCHC 2 cut(s) 329, 728
SfaNI GCATC 1 cut(s) 820
SfcI CTRYAG 1 cut(s) 1105
Sfr274I CTCGAG 1 cut(s) 572
SgrDI CGTCGACG 1 cut(s) 47
SinI GGWCC 3 cut(s) 154, 163, 596
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 3 cut(s) 80, 651, 960
SmlI CTYRAG 2 cut(s) 362, 572
SmoI CTYRAG 2 cut(s) 362, 572
Sse9I AATT 5 cut(s) 27, 523, 712, 943, 1094
SspMI CTAG 2 cut(s) 462, 1177
StyD4I CCNGG 3 cut(s) 124, 198, 380
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 778, 1007
TaiI ACGT 1 cut(s) 1072
TaqI TCGA 5 cut(s) 48, 240, 318, 540, 573
TaqII GACCGA 1 cut(s) 627
TasI AATT 5 cut(s) 27, 523, 712, 943, 1094
TfiI GAWTC 2 cut(s) 542, 998
Tru1I TTAA 4 cut(s) 363, 837, 978, 1088
Tru9I TTAA 4 cut(s) 363, 837, 978, 1088
TscAI CASTG 3 cut(s) 627, 690, 1045
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 8 cut(s) 141, 385, 402, 485, 500, 503, 506, 689
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 3 cut(s) 538, 978, 1011
TspGWI ACGGA 4 cut(s) 34, 356, 579, 696
TspRI CASTG 3 cut(s) 627, 690, 1045
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 3 cut(s) 154, 163, 596
XhoI CTCGAG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 462, 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.