Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13450 AT1G13450 AT1G13450 |
| fragaria_vesca | FvH4_6g52740 |
| malus_domestica | MD06G1052100.v1.1 MD17G1017400.v1.1 |
| prunus_persica | Prupe.3G300500_v2.0.a1 |
| pyrus_communis | pycom06g06930 pycom16g09330 pycom17g01400 |
| rosa_chinensis | RchiOBHm_Chr2g0174361 |
| rosa_laevigata | RLG00000022260 |
| rosa_multiflora | Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00078270 |
| rosa_rugosa | Rorug02G0576400 |
| rosa_samantha | Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000 |
| rosa_wichuraiana | Rw2G053840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 513, 773 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Acc36I | ACCTGC | 3 cut(s) | 379, 396, 572 |
| AccB1I | GGYRCC | 1 cut(s) | 213 |
| AccBSI | CCGCTC | 1 cut(s) | 122 |
| AccI | GTMKAC | 1 cut(s) | 48 |
| AccII | CGCG | 5 cut(s) | 72, 168, 211, 234, 1074 |
| AclWI | GGATC | 3 cut(s) | 190, 203, 651 |
| AcyI | GRCGYC | 1 cut(s) | 51 |
| AdeI | CACNNNGTG | 1 cut(s) | 336 |
| AfaI | GTAC | 3 cut(s) | 5, 340, 478 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 192, 235, 734 |
| AflII | CTTAAG | 1 cut(s) | 362 |
| AgsI | TTSAA | 3 cut(s) | 253, 373, 1136 |
| AjiI | CACGTC | 1 cut(s) | 1070 |
| AjnI | CCWGG | 3 cut(s) | 124, 198, 380 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 299, 331 |
| AluBI | AGCT | 4 cut(s) | 225, 538, 608, 827 |
| AluI | AGCT | 4 cut(s) | 225, 538, 608, 827 |
| Alw26I | GTCTC | 5 cut(s) | 97, 200, 575, 737, 1156 |
| AlwI | GGATC | 3 cut(s) | 190, 203, 651 |
| Ama87I | CYCGRG | 2 cut(s) | 292, 572 |
| AoxI | GGCC | 5 cut(s) | 183, 244, 378, 518, 724 |
| ApaI | GGGCCC | 1 cut(s) | 728 |
| ApeKI | GCWGC | 8 cut(s) | 141, 385, 402, 485, 500, 503, 506, 689 |
| AspLEI | GCGC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 7 cut(s) | 154, 163, 183, 519, 596, 724, 725 |
| AsuHPI | GGTGA | 2 cut(s) | 665, 1171 |
| AvaI | CYCGRG | 2 cut(s) | 292, 572 |
| AvaII | GGWCC | 3 cut(s) | 154, 163, 596 |
| BaeGI | GKGCMC | 1 cut(s) | 728 |
| BamHI | GGATCC | 1 cut(s) | 195 |
| BanI | GGYRCC | 1 cut(s) | 213 |
| BanII | GRGCYC | 2 cut(s) | 329, 728 |
| BauI | CACGAG | 1 cut(s) | 158 |
| BbvCI | CCTCAGC | 1 cut(s) | 678 |
| BbvI | GCAGC | 8 cut(s) | 153, 397, 414, 472, 487, 490, 493, 701 |
| BccI | CCATC | 3 cut(s) | 236, 644, 812 |
| BciT130I | CCWGG | 3 cut(s) | 126, 200, 382 |
| BclI | TGATCA | 1 cut(s) | 78 |
| BcoDI | GTCTC | 5 cut(s) | 97, 200, 575, 737, 1156 |
| BfaI | CTAG | 2 cut(s) | 462, 1177 |
| BfmI | CTRYAG | 1 cut(s) | 1105 |
| BfrI | CTTAAG | 1 cut(s) | 362 |
| BfuAI | ACCTGC | 3 cut(s) | 379, 396, 572 |
| Bme1390I | CCNGG | 3 cut(s) | 126, 200, 382 |
| Bme18I | GGWCC | 3 cut(s) | 154, 163, 596 |
| BmeT110I | CYCGRG | 2 cut(s) | 292, 572 |
| BmgBI | CACGTC | 1 cut(s) | 1070 |
| BmgT120I | GGNCC | 7 cut(s) | 154, 163, 183, 519, 596, 724, 725 |
| BmiI | GGNNCC | 6 cut(s) | 197, 215, 326, 598, 702, 726 |
| BmrFI | CCNGG | 3 cut(s) | 126, 200, 382 |
| BmsI | GCATC | 1 cut(s) | 820 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 77, 109, 275, 307, 734, 766 |
| BpmI | CTGGAG | 1 cut(s) | 108 |
| Bpu10I | CCTNAGC | 1 cut(s) | 678 |
| BsaHI | GRCGYC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 2 cut(s) | 600, 707 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 41, 71, 884, 914 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 192, 235, 734 |
| Bse3DI | GCAATG | 1 cut(s) | 1152 |
| BseBI | CCWGG | 3 cut(s) | 126, 200, 382 |
| BseDI | CCNNGG | 2 cut(s) | 600, 707 |
| BseGI | GGATG | 1 cut(s) | 1051 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 192, 235, 734 |
| BseMI | GCAATG | 1 cut(s) | 1152 |
| BseMII | CTCAG | 3 cut(s) | 669, 720, 1032 |
| BseRI | GAGGAG | 3 cut(s) | 46, 49, 519 |
| BseSI | GKGCMC | 1 cut(s) | 728 |
| BseXI | GCAGC | 8 cut(s) | 153, 397, 414, 472, 487, 490, 493, 701 |
| Bsh1236I | CGCG | 5 cut(s) | 72, 168, 211, 234, 1074 |
| Bsh1285I | CGRYCG | 2 cut(s) | 70, 322 |
| BshFI | GGCC | 5 cut(s) | 185, 246, 380, 520, 726 |
| BshNI | GGYRCC | 1 cut(s) | 213 |
| BsiEI | CGRYCG | 2 cut(s) | 70, 322 |
| BsiHKCI | CYCGRG | 2 cut(s) | 292, 572 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 192, 235, 734 |
| BsmAI | GTCTC | 5 cut(s) | 97, 200, 575, 737, 1156 |
| BsmBI | CGTCTC | 2 cut(s) | 97, 200 |
| BsmI | GAATGC | 1 cut(s) | 857 |
| BsnI | GGCC | 5 cut(s) | 185, 246, 380, 520, 726 |
| BsoBI | CYCGRG | 2 cut(s) | 292, 572 |
| Bsp120I | GGGCCC | 1 cut(s) | 724 |
| Bsp1286I | GDGCHC | 2 cut(s) | 329, 728 |
| Bsp143I | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| Bsp19I | CCATGG | 1 cut(s) | 600 |
| BspANI | GGCC | 5 cut(s) | 185, 246, 380, 520, 726 |
| BspCNI | CTCAG | 3 cut(s) | 670, 721, 1033 |
| BspFNI | CGCG | 5 cut(s) | 72, 168, 211, 234, 1074 |
| BspHI | TCATGA | 1 cut(s) | 646 |
| BspLI | GGNNCC | 6 cut(s) | 197, 215, 326, 598, 702, 726 |
| BspMI | ACCTGC | 3 cut(s) | 379, 396, 572 |
| BspPI | GGATC | 3 cut(s) | 190, 203, 651 |
| BspT107I | GGYRCC | 1 cut(s) | 213 |
| BspTI | CTTAAG | 1 cut(s) | 362 |
| BsrBI | CCGCTC | 1 cut(s) | 122 |
| BsrDI | GCAATG | 1 cut(s) | 1152 |
| BssECI | CCNNGG | 2 cut(s) | 600, 707 |
| BssMI | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| BssNI | GRCGYC | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 158 |
| BssT1I | CCWWGG | 1 cut(s) | 600 |
| Bst2BI | CACGAG | 1 cut(s) | 158 |
| Bst2UI | CCWGG | 3 cut(s) | 126, 200, 382 |
| Bst4CI | ACNGT | 2 cut(s) | 778, 1007 |
| Bst6I | CTCTTC | 2 cut(s) | 198, 254 |
| BstACI | GRCGYC | 1 cut(s) | 51 |
| BstAFI | CTTAAG | 1 cut(s) | 362 |
| BstC8I | GCNNGC | 2 cut(s) | 183, 879 |
| BstDEI | CTNAG | 4 cut(s) | 678, 729, 873, 1041 |
| BstDSI | CCRYGG | 2 cut(s) | 600, 707 |
| BstEII | GGTNACC | 1 cut(s) | 653 |
| BstF5I | GGATG | 1 cut(s) | 1051 |
| BstFNI | CGCG | 5 cut(s) | 72, 168, 211, 234, 1074 |
| BstHHI | GCGC | 1 cut(s) | 170 |
| BstKTI | GATC | 5 cut(s) | 81, 198, 322, 646, 1132 |
| BstMAI | GTCTC | 5 cut(s) | 97, 200, 575, 737, 1156 |
| BstMBI | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| BstMCI | CGRYCG | 2 cut(s) | 70, 322 |
| BstNI | CCWGG | 3 cut(s) | 126, 200, 382 |
| BstPI | GGTNACC | 1 cut(s) | 653 |
| BstSCI | CCNGG | 3 cut(s) | 124, 198, 380 |
| BstSFI | CTRYAG | 1 cut(s) | 1105 |
| BstSLI | GKGCMC | 1 cut(s) | 728 |
| BstUI | CGCG | 5 cut(s) | 72, 168, 211, 234, 1074 |
| BstV1I | GCAGC | 8 cut(s) | 153, 397, 414, 472, 487, 490, 493, 701 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| BsuRI | GGCC | 5 cut(s) | 185, 246, 380, 520, 726 |
| BtgI | CCRYGG | 2 cut(s) | 600, 707 |
| BtgZI | GCGATG | 1 cut(s) | 1008 |
| BtrI | CACGTC | 1 cut(s) | 1070 |
| BtsCI | GGATG | 1 cut(s) | 1051 |
| BtsI | GCAGTG | 2 cut(s) | 627, 690 |
| BtsIMutI | CAGTG | 3 cut(s) | 627, 690, 1038 |
| BveI | ACCTGC | 3 cut(s) | 379, 396, 572 |
| Cac8I | GCNNGC | 2 cut(s) | 183, 879 |
| CciI | TCATGA | 1 cut(s) | 646 |
| CfoI | GCGC | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 7 cut(s) | 154, 163, 183, 519, 596, 724, 725 |
| CseI | GACGC | 4 cut(s) | 59, 217, 587, 1119 |
| Csp6I | GTAC | 3 cut(s) | 4, 339, 477 |
| CviAII | CATG | 5 cut(s) | 76, 82, 334, 601, 647 |
| CviQI | GTAC | 3 cut(s) | 4, 339, 477 |
| DdeI | CTNAG | 4 cut(s) | 678, 729, 873, 1041 |
| DpnI | GATC | 5 cut(s) | 80, 197, 321, 645, 1131 |
| DpnII | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| DraIII | CACNNNGTG | 1 cut(s) | 336 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Eam1104I | CTCTTC | 2 cut(s) | 198, 254 |
| EarI | CTCTTC | 2 cut(s) | 198, 254 |
| EciI | GGCGGA | 2 cut(s) | 85, 218 |
| Eco130I | CCWWGG | 1 cut(s) | 600 |
| Eco24I | GRGCYC | 2 cut(s) | 329, 728 |
| Eco47I | GGWCC | 3 cut(s) | 154, 163, 596 |
| Eco88I | CYCGRG | 2 cut(s) | 292, 572 |
| Eco91I | GGTNACC | 1 cut(s) | 653 |
| EcoO109I | RGGNCCY | 2 cut(s) | 724, 725 |
| EcoO65I | GGTNACC | 1 cut(s) | 653 |
| EcoRII | CCWGG | 3 cut(s) | 124, 198, 380 |
| EcoT14I | CCWWGG | 1 cut(s) | 600 |
| EcoT38I | GRGCYC | 2 cut(s) | 329, 728 |
| ErhI | CCWWGG | 1 cut(s) | 600 |
| Esp3I | CGTCTC | 2 cut(s) | 97, 200 |
| FaeI | CATG | 5 cut(s) | 79, 85, 337, 604, 650 |
| FatI | CATG | 5 cut(s) | 75, 81, 333, 600, 646 |
| FauI | CCCGC | 1 cut(s) | 174 |
| FbaI | TGATCA | 1 cut(s) | 78 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| FokI | GGATG | 1 cut(s) | 1058 |
| FriOI | GRGCYC | 2 cut(s) | 329, 728 |
| FspBI | CTAG | 2 cut(s) | 462, 1177 |
| GlaI | GCGC | 1 cut(s) | 169 |
| GsuI | CTGGAG | 1 cut(s) | 108 |
| HaeIII | GGCC | 5 cut(s) | 185, 246, 380, 520, 726 |
| HgaI | GACGC | 4 cut(s) | 59, 217, 587, 1119 |
| HhaI | GCGC | 1 cut(s) | 170 |
| Hin1I | GRCGYC | 1 cut(s) | 51 |
| Hin1II | CATG | 5 cut(s) | 79, 85, 337, 604, 650 |
| Hin6I | GCGC | 1 cut(s) | 168 |
| HinP1I | GCGC | 1 cut(s) | 168 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HinfI | GANTC | 4 cut(s) | 542, 568, 916, 998 |
| HphI | GGTGA | 2 cut(s) | 665, 1171 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 339, 625 |
| Hpy188I | TCNGA | 7 cut(s) | 13, 324, 534, 562, 863, 915, 1003 |
| Hpy188III | TCNNGA | 5 cut(s) | 373, 572, 647, 920, 1055 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 339, 625 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 53, 1074 |
| HpyAV | CCTTC | 4 cut(s) | 370, 759, 798, 959 |
| HpyCH4III | ACNGT | 2 cut(s) | 778, 1007 |
| HpyCH4IV | ACGT | 1 cut(s) | 1069 |
| HpyCH4V | TGCA | 3 cut(s) | 439, 857, 1145 |
| HpyF3I | CTNAG | 4 cut(s) | 678, 729, 873, 1041 |
| HpySE526I | ACGT | 1 cut(s) | 1069 |
| Hsp92I | GRCGYC | 1 cut(s) | 51 |
| Hsp92II | CATG | 5 cut(s) | 79, 85, 337, 604, 650 |
| HspAI | GCGC | 1 cut(s) | 168 |
| Ksp22I | TGATCA | 1 cut(s) | 78 |
| Kzo9I | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| LmnI | GCTCC | 3 cut(s) | 127, 283, 324 |
| Lsp1109I | GCAGC | 8 cut(s) | 153, 397, 414, 472, 487, 490, 493, 701 |
| LweI | GCATC | 1 cut(s) | 820 |
| MaeI | CTAG | 2 cut(s) | 462, 1177 |
| MaeII | ACGT | 1 cut(s) | 1069 |
| MaeIII | GTNAC | 1 cut(s) | 653 |
| MalI | GATC | 5 cut(s) | 80, 197, 321, 645, 1131 |
| MbiI | CCGCTC | 1 cut(s) | 122 |
| MboI | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| MboII | GAAGA | 5 cut(s) | 187, 215, 241, 1034, 1124 |
| MfeI | CAATTG | 1 cut(s) | 27 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MhlI | GDGCHC | 2 cut(s) | 329, 728 |
| MluCI | AATT | 5 cut(s) | 27, 523, 712, 943, 1094 |
| MlyI | GAGTC | 2 cut(s) | 577, 925 |
| MmeI | TCCRAC | 3 cut(s) | 291, 621, 870 |
| MseI | TTAA | 4 cut(s) | 363, 837, 978, 1088 |
| MslI | CAYNNNNRTG | 3 cut(s) | 80, 651, 960 |
| MspA1I | CMGCKG | 3 cut(s) | 144, 500, 827 |
| MspCI | CTTAAG | 1 cut(s) | 362 |
| MspR9I | CCNGG | 3 cut(s) | 126, 200, 382 |
| MunI | CAATTG | 1 cut(s) | 27 |
| Mva1269I | GAATGC | 1 cut(s) | 857 |
| MvaI | CCWGG | 3 cut(s) | 126, 200, 382 |
| MvnI | CGCG | 5 cut(s) | 72, 168, 211, 234, 1074 |
| NcoI | CCATGG | 1 cut(s) | 600 |
| NdeII | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| NlaIII | CATG | 5 cut(s) | 79, 85, 337, 604, 650 |
| NlaIV | GGNNCC | 6 cut(s) | 197, 215, 326, 598, 702, 726 |
| NmeAIII | GCCGAG | 1 cut(s) | 211 |
| NmuCI | GTSAC | 1 cut(s) | 653 |
| PaeR7I | CTCGAG | 1 cut(s) | 572 |
| PagI | TCATGA | 1 cut(s) | 646 |
| PctI | GAATGC | 1 cut(s) | 857 |
| PfeI | GAWTC | 2 cut(s) | 542, 998 |
| PfoI | TCCNGGA | 1 cut(s) | 198 |
| Ple19I | CGATCG | 1 cut(s) | 322 |
| PleI | GAGTC | 2 cut(s) | 576, 924 |
| PpsI | GAGTC | 2 cut(s) | 576, 924 |
| PsiI | TTATAA | 2 cut(s) | 513, 773 |
| Psp6I | CCWGG | 3 cut(s) | 124, 198, 380 |
| PspEI | GGTNACC | 1 cut(s) | 653 |
| PspGI | CCWGG | 3 cut(s) | 124, 198, 380 |
| PspN4I | GGNNCC | 6 cut(s) | 197, 215, 326, 598, 702, 726 |
| PspOMI | GGGCCC | 1 cut(s) | 724 |
| PspPI | GGNCC | 7 cut(s) | 154, 163, 183, 519, 596, 724, 725 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PvuI | CGATCG | 1 cut(s) | 322 |
| PvuII | CAGCTG | 1 cut(s) | 827 |
| RsaI | GTAC | 3 cut(s) | 5, 340, 478 |
| RsaNI | GTAC | 3 cut(s) | 4, 339, 477 |
| RseI | CAYNNNNRTG | 3 cut(s) | 80, 651, 960 |
| SalI | GTCGAC | 1 cut(s) | 47 |
| SaqAI | TTAA | 4 cut(s) | 363, 837, 978, 1088 |
| Sau3AI | GATC | 5 cut(s) | 78, 195, 319, 643, 1129 |
| Sau96I | GGNCC | 7 cut(s) | 154, 163, 183, 519, 596, 724, 725 |
| SchI | GAGTC | 2 cut(s) | 577, 925 |
| ScrFI | CCNGG | 3 cut(s) | 126, 200, 382 |
| SduI | GDGCHC | 2 cut(s) | 329, 728 |
| SfaNI | GCATC | 1 cut(s) | 820 |
| SfcI | CTRYAG | 1 cut(s) | 1105 |
| Sfr274I | CTCGAG | 1 cut(s) | 572 |
| SgrDI | CGTCGACG | 1 cut(s) | 47 |
| SinI | GGWCC | 3 cut(s) | 154, 163, 596 |
| SlaI | CTCGAG | 1 cut(s) | 572 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 80, 651, 960 |
| SmlI | CTYRAG | 2 cut(s) | 362, 572 |
| SmoI | CTYRAG | 2 cut(s) | 362, 572 |
| Sse9I | AATT | 5 cut(s) | 27, 523, 712, 943, 1094 |
| SspMI | CTAG | 2 cut(s) | 462, 1177 |
| StyD4I | CCNGG | 3 cut(s) | 124, 198, 380 |
| StyI | CCWWGG | 1 cut(s) | 600 |
| TaaI | ACNGT | 2 cut(s) | 778, 1007 |
| TaiI | ACGT | 1 cut(s) | 1072 |
| TaqI | TCGA | 5 cut(s) | 48, 240, 318, 540, 573 |
| TaqII | GACCGA | 1 cut(s) | 627 |
| TasI | AATT | 5 cut(s) | 27, 523, 712, 943, 1094 |
| TfiI | GAWTC | 2 cut(s) | 542, 998 |
| Tru1I | TTAA | 4 cut(s) | 363, 837, 978, 1088 |
| Tru9I | TTAA | 4 cut(s) | 363, 837, 978, 1088 |
| TscAI | CASTG | 3 cut(s) | 627, 690, 1045 |
| TseFI | GTSAC | 1 cut(s) | 653 |
| TseI | GCWGC | 8 cut(s) | 141, 385, 402, 485, 500, 503, 506, 689 |
| Tsp45I | GTSAC | 1 cut(s) | 653 |
| TspDTI | ATGAA | 3 cut(s) | 538, 978, 1011 |
| TspGWI | ACGGA | 4 cut(s) | 34, 356, 579, 696 |
| TspRI | CASTG | 3 cut(s) | 627, 690, 1045 |
| Vha464I | CTTAAG | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 3 cut(s) | 154, 163, 596 |
| XhoI | CTCGAG | 1 cut(s) | 572 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XspI | CTAG | 2 cut(s) | 462, 1177 |