pycom06g06930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009374
Physical Location & Seq
Forward (+)
11235901 .. 11236325
425 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06930.1

Sequence Viewer

Length: 345 bp
ATGCACTTAGATCTGGGCCGAATCAGAACATACAAGAAAAGACGAGGACCGCGGCGGCGCCTAGGAACCAGAAGAACGATGCCGTTTCATCGTTTCTCCAGCGGTGCCACCGGGCTAAAGAAATGGGCGGAGACATGGGTCCAAGAGGAGATTTGGAGCCTGATAGGGTTTAGGAGAGATGTGGACTTGGAGGATGCCATTGATGGAGAGAGATGTGGGAGGGAGAGAGAGAGAAATGGAATGGGTGGAGTCGAAGAGGGAGGGGGAAGGGTAGGGGTCGGAAGGGGTGAGGGAGAAGACCAAAAGTTTTATTTTATTTTATTAATTTATTTTTATTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.39

Weight (kDa)

9.9

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 57, 104
AccII CGCG 1 cut(s) 52
AciI CCGC 5 cut(s) 50, 52, 55, 102, 128
AcyI GRCGYC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 16
AseI ATTAAT 1 cut(s) 323
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 16, 47, 139
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 47, 139
AvrII CCTAGG 1 cut(s) 61
BanI GGYRCC 2 cut(s) 57, 104
BbsI GAAGAC 1 cut(s) 303
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 61
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 53, 56
BlnI CCTAGG 1 cut(s) 61
BlsI GCNGC 2 cut(s) 54, 57
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 2 cut(s) 47, 139
BmgT120I GGNCC 3 cut(s) 16, 47, 139
BmiI GGNNCC 5 cut(s) 59, 67, 106, 140, 158
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 69, 184
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 50, 61
BseDI CCNNGG 2 cut(s) 50, 61
BseGI GGATG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 18
BshNI GGYRCC 2 cut(s) 57, 104
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 5 cut(s) 50, 52, 55, 102, 128
BspANI GGCC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 5 cut(s) 59, 67, 106, 140, 158
BspT107I GGYRCC 2 cut(s) 57, 104
BssECI CCNNGG 2 cut(s) 50, 61
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 199
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 3 cut(s) 16, 47, 139
Cfr42I CCGCGG 1 cut(s) 53
CviAII CATG 1 cut(s) 135
CviJI RGCY 3 cut(s) 18, 115, 159
CviKI_1 RGCY 3 cut(s) 18, 115, 159
DdeI CTNAG 1 cut(s) 7
DinI GGCGCC 1 cut(s) 59
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 47, 139
EcoT14I CCWWGG 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 59
EheI GGCGCC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 138
FaiI YATR 2 cut(s) 31, 136
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 53, 56
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 53, 56
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 53, 56
GsuI CTGGAG 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 138
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 21, 249
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 26, 281
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 261, 276
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 138
HspAI GCGC 1 cut(s) 58
KasI GGCGCC 1 cut(s) 57
KspI CCGCGG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 82, 112, 124, 173
LweI GCATC 2 cut(s) 69, 184
MaeI CTAG 1 cut(s) 62
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 84, 266, 308
MflI RGATCY 1 cut(s) 10
MluCI AATT 1 cut(s) 324
Mly113I GGCGCC 1 cut(s) 58
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 7 cut(s) 38, 139, 184, 213, 250, 254, 283
MseI TTAA 2 cut(s) 323, 343
MspA1I CMGCKG 2 cut(s) 52, 102
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 52
NarI GGCGCC 1 cut(s) 58
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 5 cut(s) 59, 67, 106, 140, 158
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 54, 57
PleI GAGTC 1 cut(s) 257
PluTI GGCGCC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 137
PshBI ATTAAT 1 cut(s) 323
PspN4I GGNNCC 5 cut(s) 59, 67, 106, 140, 158
PspPI GGNCC 3 cut(s) 16, 47, 139
PsuI RGATCY 1 cut(s) 10
SacII CCGCGG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 323, 343
SatI GCNGC 2 cut(s) 53, 56
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 3 cut(s) 16, 47, 139
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 112
SfaNI GCATC 2 cut(s) 69, 184
SfoI GGCGCC 1 cut(s) 59
Sfr303I CCGCGG 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 53
SinI GGWCC 2 cut(s) 47, 139
Sse9I AATT 1 cut(s) 324
SsiI CCGC 5 cut(s) 50, 52, 55, 102, 128
SspDI GGCGCC 1 cut(s) 57
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 61
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 324
TauI GCSGC 2 cut(s) 55, 58
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 323, 343
Tru9I TTAA 2 cut(s) 323, 343
TspDTI ATGAA 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 47, 139
VspI ATTAAT 1 cut(s) 323
XmaJI CCTAGG 1 cut(s) 61
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.