Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13450 AT1G13450 AT1G13450 |
| fragaria_vesca | FvH4_6g52740 |
| malus_domestica | MD06G1052100.v1.1 MD17G1017400.v1.1 |
| prunus_persica | Prupe.3G300500_v2.0.a1 |
| pyrus_communis | pycom06g06930 pycom16g09330 pycom17g01400 |
| rosa_chinensis | RchiOBHm_Chr2g0174361 |
| rosa_laevigata | RLG00000022260 |
| rosa_multiflora | Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00078270 |
| rosa_rugosa | Rorug02G0576400 |
| rosa_samantha | Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000 |
| rosa_wichuraiana | Rw2G053840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 908 |
| AccB1I | GGYRCC | 1 cut(s) | 402 |
| AccBSI | CCGCTC | 1 cut(s) | 453 |
| AccII | CGCG | 1 cut(s) | 340 |
| AccIII | TCCGGA | 1 cut(s) | 1044 |
| AciI | CCGC | 5 cut(s) | 213, 282, 451, 639, 1009 |
| AclWI | GGATC | 1 cut(s) | 786 |
| AcoI | YGGCCR | 1 cut(s) | 540 |
| AcuI | CTGAAG | 1 cut(s) | 1194 |
| AdeI | CACNNNGTG | 2 cut(s) | 465, 1205 |
| AfaI | GTAC | 5 cut(s) | 5, 38, 469, 1169, 1283 |
| AfeI | AGCGCT | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 321, 869 |
| AflIII | ACRYGT | 1 cut(s) | 384 |
| AgeI | ACCGGT | 1 cut(s) | 25 |
| AgsI | TTSAA | 3 cut(s) | 382, 502, 707 |
| AhlI | ACTAGT | 1 cut(s) | 251 |
| AjiI | CACGTC | 1 cut(s) | 387 |
| AjnI | CCWGG | 3 cut(s) | 567, 862, 1284 |
| AluBI | AGCT | 4 cut(s) | 670, 740, 1114, 1264 |
| AluI | AGCT | 4 cut(s) | 670, 740, 1114, 1264 |
| Alw26I | GTCTC | 2 cut(s) | 1055, 1288 |
| AlwI | GGATC | 1 cut(s) | 786 |
| Aor13HI | TCCGGA | 1 cut(s) | 1044 |
| Aor51HI | AGCGCT | 1 cut(s) | 118 |
| AoxI | GGCC | 4 cut(s) | 18, 312, 540, 880 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 309, 341 |
| AsiGI | ACCGGT | 1 cut(s) | 25 |
| AspLEI | GCGC | 1 cut(s) | 119 |
| AspS9I | GGNCC | 8 cut(s) | 19, 312, 325, 412, 562, 728, 860, 880 |
| AsuHPI | GGTGA | 4 cut(s) | 236, 506, 1079, 1303 |
| AvaII | GGWCC | 5 cut(s) | 325, 412, 562, 728, 860 |
| BanI | GGYRCC | 1 cut(s) | 402 |
| BanII | GRGCYC | 2 cut(s) | 301, 656 |
| BccI | CCATC | 4 cut(s) | 82, 779, 944, 1207 |
| BceAI | ACGGC | 1 cut(s) | 1188 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 779, 803, 813, 837 |
| BciT130I | CCWGG | 3 cut(s) | 569, 864, 1286 |
| BcoDI | GTCTC | 2 cut(s) | 1055, 1288 |
| BcuI | ACTAGT | 1 cut(s) | 251 |
| BfaI | CTAG | 2 cut(s) | 53, 252 |
| BfmI | CTRYAG | 2 cut(s) | 807, 1237 |
| BfoI | RGCGCY | 1 cut(s) | 120 |
| BglII | AGATCT | 1 cut(s) | 417 |
| Bme1390I | CCNGG | 3 cut(s) | 569, 864, 1286 |
| Bme18I | GGWCC | 5 cut(s) | 325, 412, 562, 728, 860 |
| BmgBI | CACGTC | 1 cut(s) | 387 |
| BmgT120I | GGNCC | 8 cut(s) | 19, 312, 325, 412, 562, 728, 860, 880 |
| BmiI | GGNNCC | 6 cut(s) | 298, 326, 404, 413, 837, 861 |
| BmrFI | CCNGG | 3 cut(s) | 569, 864, 1286 |
| BmsI | GCATC | 4 cut(s) | 162, 184, 610, 952 |
| BoxI | GACNNNNGTC | 1 cut(s) | 699 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 643, 675, 869, 901 |
| BpmI | CTGGAG | 1 cut(s) | 551 |
| BpuEI | CTTGAG | 1 cut(s) | 476 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1032 |
| BsaJI | CCNNGG | 3 cut(s) | 842, 1204, 1285 |
| BsaWI | WCCGGW | 3 cut(s) | 25, 1044, 1271 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 844, 874 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 321, 869 |
| Bse118I | RCCGGY | 1 cut(s) | 25 |
| Bse3DI | GCAATG | 1 cut(s) | 1284 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1032 |
| BseAI | TCCGGA | 1 cut(s) | 1044 |
| BseBI | CCWGG | 3 cut(s) | 569, 864, 1286 |
| BseDI | CCNNGG | 3 cut(s) | 842, 1204, 1285 |
| BseGI | GGATG | 1 cut(s) | 1033 |
| BseJI | GATNNNNATC | 1 cut(s) | 1032 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 321, 869 |
| BseMI | GCAATG | 1 cut(s) | 1284 |
| BseMII | CTCAG | 2 cut(s) | 435, 592 |
| BseRI | GAGGAG | 6 cut(s) | 60, 72, 231, 300, 303, 651 |
| Bsh1236I | CGCG | 1 cut(s) | 340 |
| Bsh1285I | CGRYCG | 3 cut(s) | 26, 451, 748 |
| BshFI | GGCC | 4 cut(s) | 20, 314, 542, 882 |
| BshNI | GGYRCC | 1 cut(s) | 402 |
| BshTI | ACCGGT | 1 cut(s) | 25 |
| BsiEI | CGRYCG | 3 cut(s) | 26, 451, 748 |
| BsiSI | CCGG | 3 cut(s) | 26, 1045, 1272 |
| BslFI | GGGAC | 2 cut(s) | 425, 1073 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 321, 869 |
| BsmAI | GTCTC | 2 cut(s) | 1055, 1288 |
| BsmFI | GGGAC | 2 cut(s) | 425, 1073 |
| BsmI | GAATGC | 1 cut(s) | 717 |
| BsnI | GGCC | 4 cut(s) | 20, 314, 542, 882 |
| Bsp1286I | GDGCHC | 2 cut(s) | 301, 656 |
| Bsp13I | TCCGGA | 1 cut(s) | 1044 |
| Bsp1407I | TGTACA | 2 cut(s) | 36, 1167 |
| Bsp143I | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| BspACI | CCGC | 5 cut(s) | 213, 282, 451, 639, 1009 |
| BspANI | GGCC | 4 cut(s) | 20, 314, 542, 882 |
| BspCNI | CTCAG | 2 cut(s) | 434, 591 |
| BspEI | TCCGGA | 1 cut(s) | 1044 |
| BspFNI | CGCG | 1 cut(s) | 340 |
| BspHI | TCATGA | 1 cut(s) | 781 |
| BspLI | GGNNCC | 6 cut(s) | 298, 326, 404, 413, 837, 861 |
| BspMAI | CTGCAG | 1 cut(s) | 811 |
| BspPI | GGATC | 1 cut(s) | 786 |
| BspQI | GCTCTTC | 1 cut(s) | 222 |
| BspT107I | GGYRCC | 1 cut(s) | 402 |
| BsrBI | CCGCTC | 1 cut(s) | 453 |
| BsrDI | GCAATG | 1 cut(s) | 1284 |
| BsrFI | RCCGGY | 1 cut(s) | 25 |
| BsrGI | TGTACA | 2 cut(s) | 36, 1167 |
| BssAI | RCCGGY | 1 cut(s) | 25 |
| BssECI | CCNNGG | 3 cut(s) | 842, 1204, 1285 |
| BssMI | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| BssT1I | CCWWGG | 1 cut(s) | 842 |
| Bst2UI | CCWGG | 3 cut(s) | 569, 864, 1286 |
| Bst4CI | ACNGT | 3 cut(s) | 820, 913, 1139 |
| Bst6I | CTCTTC | 3 cut(s) | 222, 892, 1089 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 172 |
| BstAUI | TGTACA | 2 cut(s) | 36, 1167 |
| BstC8I | GCNNGC | 4 cut(s) | 158, 280, 1011, 1201 |
| BstDEI | CTNAG | 3 cut(s) | 421, 578, 1005 |
| BstDSI | CCRYGG | 1 cut(s) | 1204 |
| BstF5I | GGATG | 1 cut(s) | 1033 |
| BstFNI | CGCG | 1 cut(s) | 340 |
| BstH2I | RGCGCY | 1 cut(s) | 120 |
| BstHHI | GCGC | 1 cut(s) | 119 |
| BstKTI | GATC | 4 cut(s) | 420, 752, 781, 1036 |
| BstMAI | GTCTC | 2 cut(s) | 1055, 1288 |
| BstMBI | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| BstMCI | CGRYCG | 3 cut(s) | 26, 451, 748 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 166, 172, 450, 629, 635, 638, 806, 1242 |
| BstNI | CCWGG | 3 cut(s) | 569, 864, 1286 |
| BstNSI | RCATGY | 1 cut(s) | 1066 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 699 |
| BstSCI | CCNGG | 3 cut(s) | 567, 862, 1284 |
| BstSFI | CTRYAG | 2 cut(s) | 807, 1237 |
| BstUI | CGCG | 1 cut(s) | 340 |
| BstX2I | RGATCY | 1 cut(s) | 417 |
| BstYI | RGATCY | 1 cut(s) | 417 |
| BsuRI | GGCC | 4 cut(s) | 20, 314, 542, 882 |
| BtgI | CCRYGG | 1 cut(s) | 1204 |
| BtrI | CACGTC | 1 cut(s) | 387 |
| BtsCI | GGATG | 1 cut(s) | 1033 |
| BtsIMutI | CAGTG | 1 cut(s) | 1170 |
| Cac8I | GCNNGC | 4 cut(s) | 158, 280, 1011, 1201 |
| CciI | TCATGA | 1 cut(s) | 781 |
| CfoI | GCGC | 1 cut(s) | 119 |
| Cfr10I | RCCGGY | 1 cut(s) | 25 |
| Cfr13I | GGNCC | 8 cut(s) | 19, 312, 325, 412, 562, 728, 860, 880 |
| CseI | GACGC | 1 cut(s) | 1251 |
| Csp6I | GTAC | 5 cut(s) | 4, 37, 468, 1168, 1282 |
| CspAI | ACCGGT | 1 cut(s) | 25 |
| CviAII | CATG | 3 cut(s) | 463, 782, 1063 |
| CviQI | GTAC | 5 cut(s) | 4, 37, 468, 1168, 1282 |
| DdeI | CTNAG | 3 cut(s) | 421, 578, 1005 |
| DpnI | GATC | 4 cut(s) | 419, 751, 780, 1035 |
| DpnII | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| DraIII | CACNNNGTG | 2 cut(s) | 465, 1205 |
| EaeI | YGGCCR | 1 cut(s) | 540 |
| Eam1104I | CTCTTC | 3 cut(s) | 222, 892, 1089 |
| EarI | CTCTTC | 3 cut(s) | 222, 892, 1089 |
| EciI | GGCGGA | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 842 |
| Eco24I | GRGCYC | 2 cut(s) | 301, 656 |
| Eco47I | GGWCC | 5 cut(s) | 325, 412, 562, 728, 860 |
| Eco47III | AGCGCT | 1 cut(s) | 118 |
| Eco57I | CTGAAG | 1 cut(s) | 1194 |
| EcoO109I | RGGNCCY | 2 cut(s) | 562, 860 |
| EcoRII | CCWGG | 3 cut(s) | 567, 862, 1284 |
| EcoT14I | CCWWGG | 1 cut(s) | 842 |
| EcoT22I | ATGCAT | 1 cut(s) | 177 |
| EcoT38I | GRGCYC | 2 cut(s) | 301, 656 |
| ErhI | CCWWGG | 1 cut(s) | 842 |
| FaeI | CATG | 3 cut(s) | 466, 785, 1066 |
| FaiI | YATR | 9 cut(s) | 464, 734, 783, 908, 1064, 1109, 1125, 1142, 1239 |
| FaqI | GGGAC | 2 cut(s) | 425, 1073 |
| FatI | CATG | 3 cut(s) | 462, 781, 1062 |
| FauI | CCCGC | 1 cut(s) | 1002 |
| FokI | GGATG | 1 cut(s) | 1040 |
| FriOI | GRGCYC | 2 cut(s) | 301, 656 |
| FspBI | CTAG | 2 cut(s) | 53, 252 |
| GlaI | GCGC | 1 cut(s) | 118 |
| GsuI | CTGGAG | 1 cut(s) | 551 |
| HaeII | RGCGCY | 1 cut(s) | 120 |
| HaeIII | GGCC | 4 cut(s) | 20, 314, 542, 882 |
| HapII | CCGG | 3 cut(s) | 26, 1045, 1272 |
| HgaI | GACGC | 1 cut(s) | 1251 |
| HhaI | GCGC | 1 cut(s) | 119 |
| Hin1II | CATG | 3 cut(s) | 466, 785, 1066 |
| Hin6I | GCGC | 1 cut(s) | 117 |
| HinP1I | GCGC | 1 cut(s) | 117 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HindIII | AAGCTT | 1 cut(s) | 1112 |
| HinfI | GANTC | 5 cut(s) | 68, 674, 710, 1048, 1130 |
| HpaII | CCGG | 3 cut(s) | 26, 1045, 1272 |
| HphI | GGTGA | 4 cut(s) | 236, 506, 1079, 1303 |
| Hpy166II | GTNNAC | 5 cut(s) | 31, 370, 468, 1170, 1220 |
| Hpy188I | TCNGA | 7 cut(s) | 13, 73, 141, 180, 581, 995, 1135 |
| Hpy188III | TCNNGA | 6 cut(s) | 502, 704, 782, 1045, 1052, 1187 |
| Hpy8I | GTNNAC | 5 cut(s) | 31, 370, 468, 1170, 1220 |
| HpyAV | CCTTC | 5 cut(s) | 10, 215, 499, 930, 1091 |
| HpyCH4III | ACNGT | 3 cut(s) | 820, 913, 1139 |
| HpyCH4IV | ACGT | 2 cut(s) | 320, 386 |
| HpyCH4V | TGCA | 5 cut(s) | 175, 809, 824, 1199, 1277 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 166, 172, 450, 629, 635, 638, 806, 1242 |
| HpyF3I | CTNAG | 3 cut(s) | 421, 578, 1005 |
| HpySE526I | ACGT | 2 cut(s) | 320, 386 |
| Hsp92II | CATG | 3 cut(s) | 466, 785, 1066 |
| HspAI | GCGC | 1 cut(s) | 117 |
| Kpn2I | TCCGGA | 1 cut(s) | 1044 |
| Kzo9I | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| LguI | GCTCTTC | 1 cut(s) | 222 |
| LmnI | GCTCC | 5 cut(s) | 114, 124, 290, 296, 458 |
| LweI | GCATC | 4 cut(s) | 162, 184, 610, 952 |
| MaeI | CTAG | 2 cut(s) | 53, 252 |
| MaeII | ACGT | 2 cut(s) | 320, 386 |
| MaeIII | GTNAC | 2 cut(s) | 512, 692 |
| MalI | GATC | 4 cut(s) | 419, 751, 780, 1035 |
| MbiI | CCGCTC | 1 cut(s) | 453 |
| MboI | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| MflI | RGATCY | 1 cut(s) | 417 |
| MhlI | GDGCHC | 2 cut(s) | 301, 656 |
| MluCI | AATT | 5 cut(s) | 236, 760, 847, 1075, 1101 |
| MlyI | GAGTC | 2 cut(s) | 1057, 1124 |
| MmeI | TCCRAC | 3 cut(s) | 420, 756, 1002 |
| Mph1103I | ATGCAT | 1 cut(s) | 177 |
| MroI | TCCGGA | 1 cut(s) | 1044 |
| MseI | TTAA | 1 cut(s) | 969 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1092 |
| MspA1I | CMGCKG | 2 cut(s) | 213, 641 |
| MspI | CCGG | 3 cut(s) | 26, 1045, 1272 |
| MspR9I | CCNGG | 3 cut(s) | 569, 864, 1286 |
| Mva1269I | GAATGC | 1 cut(s) | 717 |
| MvaI | CCWGG | 3 cut(s) | 569, 864, 1286 |
| MvnI | CGCG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 166, 172, 450, 629, 635, 638, 806, 1242 |
| NdeII | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| NlaIII | CATG | 3 cut(s) | 466, 785, 1066 |
| NlaIV | GGNNCC | 6 cut(s) | 298, 326, 404, 413, 837, 861 |
| NmeAIII | GCCGAG | 1 cut(s) | 518 |
| NmuCI | GTSAC | 2 cut(s) | 512, 692 |
| NsiI | ATGCAT | 1 cut(s) | 177 |
| NspI | RCATGY | 1 cut(s) | 1066 |
| PagI | TCATGA | 1 cut(s) | 781 |
| PciSI | GCTCTTC | 1 cut(s) | 222 |
| PctI | GAATGC | 1 cut(s) | 717 |
| PfeI | GAWTC | 3 cut(s) | 68, 674, 710 |
| PfoI | TCCNGGA | 2 cut(s) | 567, 862 |
| PinAI | ACCGGT | 1 cut(s) | 25 |
| PleI | GAGTC | 2 cut(s) | 1056, 1124 |
| PpsI | GAGTC | 2 cut(s) | 1056, 1124 |
| PpuMI | RGGWCCY | 2 cut(s) | 562, 860 |
| PshAI | GACNNNNGTC | 1 cut(s) | 699 |
| PsiI | TTATAA | 1 cut(s) | 908 |
| Psp5II | RGGWCCY | 2 cut(s) | 562, 860 |
| Psp6I | CCWGG | 3 cut(s) | 567, 862, 1284 |
| PspGI | CCWGG | 3 cut(s) | 567, 862, 1284 |
| PspN4I | GGNNCC | 6 cut(s) | 298, 326, 404, 413, 837, 861 |
| PspPI | GGNCC | 8 cut(s) | 19, 312, 325, 412, 562, 728, 860, 880 |
| PspPPI | RGGWCCY | 2 cut(s) | 562, 860 |
| PstI | CTGCAG | 1 cut(s) | 811 |
| PsuI | RGATCY | 1 cut(s) | 417 |
| RsaI | GTAC | 5 cut(s) | 5, 38, 469, 1169, 1283 |
| RsaNI | GTAC | 5 cut(s) | 4, 37, 468, 1168, 1282 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1092 |
| SapI | GCTCTTC | 1 cut(s) | 222 |
| SaqAI | TTAA | 1 cut(s) | 969 |
| Sau3AI | GATC | 4 cut(s) | 417, 749, 778, 1033 |
| Sau96I | GGNCC | 8 cut(s) | 19, 312, 325, 412, 562, 728, 860, 880 |
| SchI | GAGTC | 2 cut(s) | 1057, 1124 |
| ScrFI | CCNGG | 3 cut(s) | 569, 864, 1286 |
| SduI | GDGCHC | 2 cut(s) | 301, 656 |
| SfaNI | GCATC | 4 cut(s) | 162, 184, 610, 952 |
| SfcI | CTRYAG | 2 cut(s) | 807, 1237 |
| SinI | GGWCC | 5 cut(s) | 325, 412, 562, 728, 860 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1092 |
| SmlI | CTYRAG | 1 cut(s) | 491 |
| SmoI | CTYRAG | 1 cut(s) | 491 |
| SpeI | ACTAGT | 1 cut(s) | 251 |
| Sse9I | AATT | 5 cut(s) | 236, 760, 847, 1075, 1101 |
| SsiI | CCGC | 5 cut(s) | 213, 282, 451, 639, 1009 |
| SspMI | CTAG | 2 cut(s) | 53, 252 |
| StyD4I | CCNGG | 3 cut(s) | 567, 862, 1284 |
| StyI | CCWWGG | 1 cut(s) | 842 |
| TaaI | ACNGT | 3 cut(s) | 820, 913, 1139 |
| TaiI | ACGT | 2 cut(s) | 323, 389 |
| TaqI | TCGA | 4 cut(s) | 447, 672, 1053, 1092 |
| TaqII | GACCGA | 1 cut(s) | 762 |
| TasI | AATT | 5 cut(s) | 236, 760, 847, 1075, 1101 |
| TatI | WGTACW | 2 cut(s) | 36, 1167 |
| TauI | GCSGC | 1 cut(s) | 641 |
| TfiI | GAWTC | 3 cut(s) | 68, 674, 710 |
| Tru1I | TTAA | 1 cut(s) | 969 |
| Tru9I | TTAA | 1 cut(s) | 969 |
| TscAI | CASTG | 1 cut(s) | 1177 |
| TseFI | GTSAC | 2 cut(s) | 512, 692 |
| Tsp45I | GTSAC | 2 cut(s) | 512, 692 |
| TspDTI | ATGAA | 2 cut(s) | 1044, 1110 |
| TspGWI | ACGGA | 2 cut(s) | 485, 1166 |
| TspRI | CASTG | 1 cut(s) | 1177 |
| VpaK11BI | GGWCC | 5 cut(s) | 325, 412, 562, 728, 860 |
| XceI | RCATGY | 1 cut(s) | 1066 |
| XspI | CTAG | 2 cut(s) | 53, 252 |
| Zsp2I | ATGCAT | 1 cut(s) | 177 |