Prupe.3G300500_v2.0.a1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26546693 .. 26549338
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G300500.1

Sequence Viewer

Length: 1311 bp
ATGTACCTCTCGGAGAAGGCCCGACCGGTTGACTTGTACAAGGGAGGAGGACTAGGAGGAGAAGAAGAATCGGAGAGAGAGATGATGATGGAGGTGGTGGTGGTGGCGAATGGGAGCGCTCCACCTCATCATCATCATCAGAACCAAAGCGAAAGCCAGCACCAGCAGCAGATGCATCAGATGATAGTGGGGATTGGGGAGAACAACAGCAGCGGAGGAGAAGGTGAAGAGCAAGAATTGTGTGCTGCTACTAGTAATAGTATTGGCAGCAGAGCAGCAGGCGGAGGAGGAGCAGGAGCCCCAAAGAAACGGGCCGAAACGTGGGTCCAAGAAGAAACGCGAAGCCTGATAGGGTTTAGGAGAGAGGTGGACGGGCTTTTCAACACGTCCAAGTCCAACAGGCACCTCTGGGACCAGATCTCAGCCAAGATGAGAGAAAAGGGCTTCGACCGCTCCCCCACCATGTGTACGGACAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCTCGTCACCAAGTCAAAGTCGGCAGTCGCTCGGCCAAGATGTCGTATTACGAGGACCTCCAGGACTTGCTCAGAGATAGAACCAACAACAACCACAACGCTGCTTCTACTGATGCTGCTGCTGCTTCTGCCGCTGCTTACAAGAGCCCCACTCCTCCCAAGCTCGAATCCTTTGTTCGCTTCTGTGACAAGGGTCTTGAAGATTCAGGCATTCCATTTGGACCTATGGAAGCTACCGACCGATCAGCACTCAATTTGGAAAGGCAGTTGGATCATGATGGCGACCCTCTTGCTATTACTGCAGCCGATACAGTTGCAGTTAGTGGGGTTCCTCCTTGGAATTGGAGAGAGGGTCCTGGAAATGGAGGGGAGGGCCACTCTTCTTATTGTGGAAAGATTATAACTGTCAAGTTGGGGGAATACACCAGAAGGATTGGTATTGATGGAACTGCTGATGCGATTAAGGAGGCAATCAAGTCTGCGTTCAGAATAAGAACTAAGCGGGCATTTTGGTTGGAGGATGAAGATCAGGTTGTCCGGAGTCTCGATAGGGACATGCCTTTGGGCAATTACACTCTTCACCTCGATGAAGGAATTACCATAAAGCTTTGCCTCTATGATGACTCTGACCGTATAGTTCCTACGGAAGAAATAACATTGTACACTGAAGATGATTTTCGTGATTTTCTTGCACGCCGTGGCTTGATGGGTTTACGAGAGTTGAGTGGCTATAGACGCATTGATACTTTAGATGAGCTACAATCCGGTGCAATGTACCAGGGGGTGAGACTTCTTGGGGACTAA

Protein Analysis

437

Amino Acids

48.42

Weight (kDa)

5.58

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 908
AccB1I GGYRCC 1 cut(s) 402
AccBSI CCGCTC 1 cut(s) 453
AccII CGCG 1 cut(s) 340
AccIII TCCGGA 1 cut(s) 1044
AciI CCGC 5 cut(s) 213, 282, 451, 639, 1009
AclWI GGATC 1 cut(s) 786
AcoI YGGCCR 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 1194
AdeI CACNNNGTG 2 cut(s) 465, 1205
AfaI GTAC 5 cut(s) 5, 38, 469, 1169, 1283
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 321, 869
AflIII ACRYGT 1 cut(s) 384
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 382, 502, 707
AhlI ACTAGT 1 cut(s) 251
AjiI CACGTC 1 cut(s) 387
AjnI CCWGG 3 cut(s) 567, 862, 1284
AluBI AGCT 4 cut(s) 670, 740, 1114, 1264
AluI AGCT 4 cut(s) 670, 740, 1114, 1264
Alw26I GTCTC 2 cut(s) 1055, 1288
AlwI GGATC 1 cut(s) 786
Aor13HI TCCGGA 1 cut(s) 1044
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 4 cut(s) 18, 312, 540, 880
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 8 cut(s) 19, 312, 325, 412, 562, 728, 860, 880
AsuHPI GGTGA 4 cut(s) 236, 506, 1079, 1303
AvaII GGWCC 5 cut(s) 325, 412, 562, 728, 860
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 301, 656
BccI CCATC 4 cut(s) 82, 779, 944, 1207
BceAI ACGGC 1 cut(s) 1188
BcgI CGANNNNNNTGC 4 cut(s) 779, 803, 813, 837
BciT130I CCWGG 3 cut(s) 569, 864, 1286
BcoDI GTCTC 2 cut(s) 1055, 1288
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 2 cut(s) 53, 252
BfmI CTRYAG 2 cut(s) 807, 1237
BfoI RGCGCY 1 cut(s) 120
BglII AGATCT 1 cut(s) 417
Bme1390I CCNGG 3 cut(s) 569, 864, 1286
Bme18I GGWCC 5 cut(s) 325, 412, 562, 728, 860
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 8 cut(s) 19, 312, 325, 412, 562, 728, 860, 880
BmiI GGNNCC 6 cut(s) 298, 326, 404, 413, 837, 861
BmrFI CCNGG 3 cut(s) 569, 864, 1286
BmsI GCATC 4 cut(s) 162, 184, 610, 952
BoxI GACNNNNGTC 1 cut(s) 699
BplI GAGNNNNNCTC 4 cut(s) 643, 675, 869, 901
BpmI CTGGAG 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 1032
BsaJI CCNNGG 3 cut(s) 842, 1204, 1285
BsaWI WCCGGW 3 cut(s) 25, 1044, 1271
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 869
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 1284
Bse8I GATNNNNATC 1 cut(s) 1032
BseAI TCCGGA 1 cut(s) 1044
BseBI CCWGG 3 cut(s) 569, 864, 1286
BseDI CCNNGG 3 cut(s) 842, 1204, 1285
BseGI GGATG 1 cut(s) 1033
BseJI GATNNNNATC 1 cut(s) 1032
BseLI CCNNNNNNNGG 2 cut(s) 321, 869
BseMI GCAATG 1 cut(s) 1284
BseMII CTCAG 2 cut(s) 435, 592
BseRI GAGGAG 6 cut(s) 60, 72, 231, 300, 303, 651
Bsh1236I CGCG 1 cut(s) 340
Bsh1285I CGRYCG 3 cut(s) 26, 451, 748
BshFI GGCC 4 cut(s) 20, 314, 542, 882
BshNI GGYRCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 25
BsiEI CGRYCG 3 cut(s) 26, 451, 748
BsiSI CCGG 3 cut(s) 26, 1045, 1272
BslFI GGGAC 2 cut(s) 425, 1073
BslI CCNNNNNNNGG 2 cut(s) 321, 869
BsmAI GTCTC 2 cut(s) 1055, 1288
BsmFI GGGAC 2 cut(s) 425, 1073
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 4 cut(s) 20, 314, 542, 882
Bsp1286I GDGCHC 2 cut(s) 301, 656
Bsp13I TCCGGA 1 cut(s) 1044
Bsp1407I TGTACA 2 cut(s) 36, 1167
Bsp143I GATC 4 cut(s) 417, 749, 778, 1033
BspACI CCGC 5 cut(s) 213, 282, 451, 639, 1009
BspANI GGCC 4 cut(s) 20, 314, 542, 882
BspCNI CTCAG 2 cut(s) 434, 591
BspEI TCCGGA 1 cut(s) 1044
BspFNI CGCG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 6 cut(s) 298, 326, 404, 413, 837, 861
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 1 cut(s) 786
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 402
BsrBI CCGCTC 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 1284
BsrFI RCCGGY 1 cut(s) 25
BsrGI TGTACA 2 cut(s) 36, 1167
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 842, 1204, 1285
BssMI GATC 4 cut(s) 417, 749, 778, 1033
BssT1I CCWWGG 1 cut(s) 842
Bst2UI CCWGG 3 cut(s) 569, 864, 1286
Bst4CI ACNGT 3 cut(s) 820, 913, 1139
Bst6I CTCTTC 3 cut(s) 222, 892, 1089
BstAPI GCANNNNNTGC 1 cut(s) 172
BstAUI TGTACA 2 cut(s) 36, 1167
BstC8I GCNNGC 4 cut(s) 158, 280, 1011, 1201
BstDEI CTNAG 3 cut(s) 421, 578, 1005
BstDSI CCRYGG 1 cut(s) 1204
BstF5I GGATG 1 cut(s) 1033
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 4 cut(s) 420, 752, 781, 1036
BstMAI GTCTC 2 cut(s) 1055, 1288
BstMBI GATC 4 cut(s) 417, 749, 778, 1033
BstMCI CGRYCG 3 cut(s) 26, 451, 748
BstMWI GCNNNNNNNGC 8 cut(s) 166, 172, 450, 629, 635, 638, 806, 1242
BstNI CCWGG 3 cut(s) 569, 864, 1286
BstNSI RCATGY 1 cut(s) 1066
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 567, 862, 1284
BstSFI CTRYAG 2 cut(s) 807, 1237
BstUI CGCG 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BsuRI GGCC 4 cut(s) 20, 314, 542, 882
BtgI CCRYGG 1 cut(s) 1204
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 1033
BtsIMutI CAGTG 1 cut(s) 1170
Cac8I GCNNGC 4 cut(s) 158, 280, 1011, 1201
CciI TCATGA 1 cut(s) 781
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 8 cut(s) 19, 312, 325, 412, 562, 728, 860, 880
CseI GACGC 1 cut(s) 1251
Csp6I GTAC 5 cut(s) 4, 37, 468, 1168, 1282
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 3 cut(s) 463, 782, 1063
CviQI GTAC 5 cut(s) 4, 37, 468, 1168, 1282
DdeI CTNAG 3 cut(s) 421, 578, 1005
DpnI GATC 4 cut(s) 419, 751, 780, 1035
DpnII GATC 4 cut(s) 417, 749, 778, 1033
DraIII CACNNNGTG 2 cut(s) 465, 1205
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 222, 892, 1089
EarI CTCTTC 3 cut(s) 222, 892, 1089
EciI GGCGGA 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 842
Eco24I GRGCYC 2 cut(s) 301, 656
Eco47I GGWCC 5 cut(s) 325, 412, 562, 728, 860
Eco47III AGCGCT 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 1194
EcoO109I RGGNCCY 2 cut(s) 562, 860
EcoRII CCWGG 3 cut(s) 567, 862, 1284
EcoT14I CCWWGG 1 cut(s) 842
EcoT22I ATGCAT 1 cut(s) 177
EcoT38I GRGCYC 2 cut(s) 301, 656
ErhI CCWWGG 1 cut(s) 842
FaeI CATG 3 cut(s) 466, 785, 1066
FaiI YATR 9 cut(s) 464, 734, 783, 908, 1064, 1109, 1125, 1142, 1239
FaqI GGGAC 2 cut(s) 425, 1073
FatI CATG 3 cut(s) 462, 781, 1062
FauI CCCGC 1 cut(s) 1002
FokI GGATG 1 cut(s) 1040
FriOI GRGCYC 2 cut(s) 301, 656
FspBI CTAG 2 cut(s) 53, 252
GlaI GCGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 4 cut(s) 20, 314, 542, 882
HapII CCGG 3 cut(s) 26, 1045, 1272
HgaI GACGC 1 cut(s) 1251
HhaI GCGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 466, 785, 1066
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 5 cut(s) 68, 674, 710, 1048, 1130
HpaII CCGG 3 cut(s) 26, 1045, 1272
HphI GGTGA 4 cut(s) 236, 506, 1079, 1303
Hpy166II GTNNAC 5 cut(s) 31, 370, 468, 1170, 1220
Hpy188I TCNGA 7 cut(s) 13, 73, 141, 180, 581, 995, 1135
Hpy188III TCNNGA 6 cut(s) 502, 704, 782, 1045, 1052, 1187
Hpy8I GTNNAC 5 cut(s) 31, 370, 468, 1170, 1220
HpyAV CCTTC 5 cut(s) 10, 215, 499, 930, 1091
HpyCH4III ACNGT 3 cut(s) 820, 913, 1139
HpyCH4IV ACGT 2 cut(s) 320, 386
HpyCH4V TGCA 5 cut(s) 175, 809, 824, 1199, 1277
HpyF10VI GCNNNNNNNGC 8 cut(s) 166, 172, 450, 629, 635, 638, 806, 1242
HpyF3I CTNAG 3 cut(s) 421, 578, 1005
HpySE526I ACGT 2 cut(s) 320, 386
Hsp92II CATG 3 cut(s) 466, 785, 1066
HspAI GCGC 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 1044
Kzo9I GATC 4 cut(s) 417, 749, 778, 1033
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 5 cut(s) 114, 124, 290, 296, 458
LweI GCATC 4 cut(s) 162, 184, 610, 952
MaeI CTAG 2 cut(s) 53, 252
MaeII ACGT 2 cut(s) 320, 386
MaeIII GTNAC 2 cut(s) 512, 692
MalI GATC 4 cut(s) 419, 751, 780, 1035
MbiI CCGCTC 1 cut(s) 453
MboI GATC 4 cut(s) 417, 749, 778, 1033
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 2 cut(s) 301, 656
MluCI AATT 5 cut(s) 236, 760, 847, 1075, 1101
MlyI GAGTC 2 cut(s) 1057, 1124
MmeI TCCRAC 3 cut(s) 420, 756, 1002
Mph1103I ATGCAT 1 cut(s) 177
MroI TCCGGA 1 cut(s) 1044
MseI TTAA 1 cut(s) 969
MslI CAYNNNNRTG 1 cut(s) 1092
MspA1I CMGCKG 2 cut(s) 213, 641
MspI CCGG 3 cut(s) 26, 1045, 1272
MspR9I CCNGG 3 cut(s) 569, 864, 1286
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 3 cut(s) 569, 864, 1286
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 8 cut(s) 166, 172, 450, 629, 635, 638, 806, 1242
NdeII GATC 4 cut(s) 417, 749, 778, 1033
NlaIII CATG 3 cut(s) 466, 785, 1066
NlaIV GGNNCC 6 cut(s) 298, 326, 404, 413, 837, 861
NmeAIII GCCGAG 1 cut(s) 518
NmuCI GTSAC 2 cut(s) 512, 692
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 1 cut(s) 1066
PagI TCATGA 1 cut(s) 781
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 68, 674, 710
PfoI TCCNGGA 2 cut(s) 567, 862
PinAI ACCGGT 1 cut(s) 25
PleI GAGTC 2 cut(s) 1056, 1124
PpsI GAGTC 2 cut(s) 1056, 1124
PpuMI RGGWCCY 2 cut(s) 562, 860
PshAI GACNNNNGTC 1 cut(s) 699
PsiI TTATAA 1 cut(s) 908
Psp5II RGGWCCY 2 cut(s) 562, 860
Psp6I CCWGG 3 cut(s) 567, 862, 1284
PspGI CCWGG 3 cut(s) 567, 862, 1284
PspN4I GGNNCC 6 cut(s) 298, 326, 404, 413, 837, 861
PspPI GGNCC 8 cut(s) 19, 312, 325, 412, 562, 728, 860, 880
PspPPI RGGWCCY 2 cut(s) 562, 860
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 417
RsaI GTAC 5 cut(s) 5, 38, 469, 1169, 1283
RsaNI GTAC 5 cut(s) 4, 37, 468, 1168, 1282
RseI CAYNNNNRTG 1 cut(s) 1092
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 969
Sau3AI GATC 4 cut(s) 417, 749, 778, 1033
Sau96I GGNCC 8 cut(s) 19, 312, 325, 412, 562, 728, 860, 880
SchI GAGTC 2 cut(s) 1057, 1124
ScrFI CCNGG 3 cut(s) 569, 864, 1286
SduI GDGCHC 2 cut(s) 301, 656
SfaNI GCATC 4 cut(s) 162, 184, 610, 952
SfcI CTRYAG 2 cut(s) 807, 1237
SinI GGWCC 5 cut(s) 325, 412, 562, 728, 860
SmiMI CAYNNNNRTG 1 cut(s) 1092
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 5 cut(s) 236, 760, 847, 1075, 1101
SsiI CCGC 5 cut(s) 213, 282, 451, 639, 1009
SspMI CTAG 2 cut(s) 53, 252
StyD4I CCNGG 3 cut(s) 567, 862, 1284
StyI CCWWGG 1 cut(s) 842
TaaI ACNGT 3 cut(s) 820, 913, 1139
TaiI ACGT 2 cut(s) 323, 389
TaqI TCGA 4 cut(s) 447, 672, 1053, 1092
TaqII GACCGA 1 cut(s) 762
TasI AATT 5 cut(s) 236, 760, 847, 1075, 1101
TatI WGTACW 2 cut(s) 36, 1167
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 3 cut(s) 68, 674, 710
Tru1I TTAA 1 cut(s) 969
Tru9I TTAA 1 cut(s) 969
TscAI CASTG 1 cut(s) 1177
TseFI GTSAC 2 cut(s) 512, 692
Tsp45I GTSAC 2 cut(s) 512, 692
TspDTI ATGAA 2 cut(s) 1044, 1110
TspGWI ACGGA 2 cut(s) 485, 1166
TspRI CASTG 1 cut(s) 1177
VpaK11BI GGWCC 5 cut(s) 325, 412, 562, 728, 860
XceI RCATGY 1 cut(s) 1066
XspI CTAG 2 cut(s) 53, 252
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.