Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13450 AT1G13450 AT1G13450 |
| fragaria_vesca | FvH4_6g52740 |
| malus_domestica | MD06G1052100.v1.1 MD17G1017400.v1.1 |
| prunus_persica | Prupe.3G300500_v2.0.a1 |
| pyrus_communis | pycom06g06930 pycom16g09330 pycom17g01400 |
| rosa_chinensis | RchiOBHm_Chr2g0174361 |
| rosa_laevigata | RLG00000022260 |
| rosa_multiflora | Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00078270 |
| rosa_rugosa | Rorug02G0576400 |
| rosa_samantha | Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000 |
| rosa_wichuraiana | Rw2G053840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 510, 770 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 152 |
| Acc36I | ACCTGC | 3 cut(s) | 370, 387, 569 |
| AccB1I | GGYRCC | 1 cut(s) | 204 |
| AccI | GTMKAC | 1 cut(s) | 48 |
| AccII | CGCG | 3 cut(s) | 72, 159, 225 |
| AclWI | GGATC | 3 cut(s) | 181, 194, 648 |
| AcsI | RAATTY | 1 cut(s) | 520 |
| AcuI | CTGAAG | 1 cut(s) | 1038 |
| AcyI | GRCGYC | 1 cut(s) | 51 |
| AdeI | CACNNNGTG | 2 cut(s) | 327, 1070 |
| AfaI | GTAC | 2 cut(s) | 5, 331 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 183, 226, 294, 731 |
| AflII | CTTAAG | 1 cut(s) | 353 |
| AgsI | TTSAA | 3 cut(s) | 244, 364, 1142 |
| AjiI | CACGTC | 1 cut(s) | 1067 |
| AjnI | CCWGG | 3 cut(s) | 115, 189, 371 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 290, 322 |
| AluBI | AGCT | 4 cut(s) | 535, 605, 674, 824 |
| AluI | AGCT | 4 cut(s) | 535, 605, 674, 824 |
| Alw26I | GTCTC | 3 cut(s) | 97, 191, 734 |
| AlwI | GGATC | 3 cut(s) | 181, 194, 648 |
| AoxI | GGCC | 6 cut(s) | 113, 174, 235, 369, 515, 721 |
| ApaI | GGGCCC | 1 cut(s) | 725 |
| ApeKI | GCWGC | 5 cut(s) | 132, 376, 393, 671, 686 |
| ApoI | RAATTY | 1 cut(s) | 520 |
| AspLEI | GCGC | 1 cut(s) | 161 |
| AspS9I | GGNCC | 7 cut(s) | 113, 145, 154, 174, 593, 721, 722 |
| AsuC2I | CCSGG | 2 cut(s) | 112, 202 |
| AsuHPI | GGTGA | 1 cut(s) | 662 |
| AvaII | GGWCC | 3 cut(s) | 145, 154, 593 |
| BaeGI | GKGCMC | 1 cut(s) | 725 |
| BamHI | GGATCC | 1 cut(s) | 186 |
| BanI | GGYRCC | 1 cut(s) | 204 |
| BanII | GRGCYC | 2 cut(s) | 320, 725 |
| BauI | CACGAG | 1 cut(s) | 149 |
| BbvCI | CCTCAGC | 1 cut(s) | 675 |
| BbvI | GCAGC | 5 cut(s) | 144, 388, 405, 683, 698 |
| BccI | CCATC | 3 cut(s) | 227, 641, 809 |
| BciT130I | CCWGG | 3 cut(s) | 117, 191, 373 |
| BclI | TGATCA | 1 cut(s) | 78 |
| BcnI | CCSGG | 2 cut(s) | 112, 202 |
| BcoDI | GTCTC | 3 cut(s) | 97, 191, 734 |
| BfaI | CTAG | 2 cut(s) | 453, 477 |
| BfmI | CTRYAG | 2 cut(s) | 669, 1111 |
| BfrI | CTTAAG | 1 cut(s) | 353 |
| BfuAI | ACCTGC | 3 cut(s) | 370, 387, 569 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 213 |
| Bme1390I | CCNGG | 5 cut(s) | 112, 117, 191, 202, 373 |
| Bme18I | GGWCC | 3 cut(s) | 145, 154, 593 |
| BmgBI | CACGTC | 1 cut(s) | 1067 |
| BmgT120I | GGNCC | 7 cut(s) | 113, 145, 154, 174, 593, 721, 722 |
| BmiI | GGNNCC | 4 cut(s) | 188, 206, 317, 723 |
| BmrFI | CCNGG | 5 cut(s) | 112, 117, 191, 202, 373 |
| BmsI | GCATC | 2 cut(s) | 565, 817 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 77, 109, 266, 298, 731, 763 |
| Bpu10I | CCTNAGC | 1 cut(s) | 675 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| BpuMI | CCSGG | 2 cut(s) | 112, 202 |
| BsaHI | GRCGYC | 1 cut(s) | 51 |
| BsaI | GGTCTC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 1 cut(s) | 704 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 41, 71, 881, 911 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 183, 226, 294, 731 |
| Bse118I | RCCGGY | 1 cut(s) | 485 |
| Bse3DI | GCAATG | 1 cut(s) | 1158 |
| BseBI | CCWGG | 3 cut(s) | 117, 191, 373 |
| BseDI | CCNNGG | 1 cut(s) | 704 |
| BseGI | GGATG | 2 cut(s) | 580, 1048 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 183, 226, 294, 731 |
| BseMI | GCAATG | 1 cut(s) | 1158 |
| BseMII | CTCAG | 3 cut(s) | 666, 717, 1029 |
| BseRI | GAGGAG | 3 cut(s) | 46, 49, 516 |
| BseSI | GKGCMC | 1 cut(s) | 725 |
| BseXI | GCAGC | 5 cut(s) | 144, 388, 405, 683, 698 |
| Bsh1236I | CGCG | 3 cut(s) | 72, 159, 225 |
| Bsh1285I | CGRYCG | 2 cut(s) | 70, 313 |
| BshFI | GGCC | 6 cut(s) | 115, 176, 237, 371, 517, 723 |
| BshNI | GGYRCC | 1 cut(s) | 204 |
| BsiEI | CGRYCG | 2 cut(s) | 70, 313 |
| BsiSI | CCGG | 3 cut(s) | 111, 202, 486 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 183, 226, 294, 731 |
| BsmAI | GTCTC | 3 cut(s) | 97, 191, 734 |
| BsmBI | CGTCTC | 1 cut(s) | 97 |
| BsmI | GAATGC | 1 cut(s) | 854 |
| BsnI | GGCC | 6 cut(s) | 115, 176, 237, 371, 517, 723 |
| Bso31I | GGTCTC | 1 cut(s) | 191 |
| Bsp120I | GGGCCC | 1 cut(s) | 721 |
| Bsp1286I | GDGCHC | 2 cut(s) | 320, 725 |
| Bsp143I | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| BspANI | GGCC | 6 cut(s) | 115, 176, 237, 371, 517, 723 |
| BspCNI | CTCAG | 3 cut(s) | 667, 718, 1030 |
| BspFNI | CGCG | 3 cut(s) | 72, 159, 225 |
| BspHI | TCATGA | 1 cut(s) | 643 |
| BspLI | GGNNCC | 4 cut(s) | 188, 206, 317, 723 |
| BspMAI | CTGCAG | 1 cut(s) | 673 |
| BspMI | ACCTGC | 3 cut(s) | 370, 387, 569 |
| BspPI | GGATC | 3 cut(s) | 181, 194, 648 |
| BspT107I | GGYRCC | 1 cut(s) | 204 |
| BspTI | CTTAAG | 1 cut(s) | 353 |
| BspTNI | GGTCTC | 1 cut(s) | 191 |
| BsrDI | GCAATG | 1 cut(s) | 1158 |
| BsrFI | RCCGGY | 1 cut(s) | 485 |
| BssAI | RCCGGY | 1 cut(s) | 485 |
| BssECI | CCNNGG | 1 cut(s) | 704 |
| BssMI | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| BssNI | GRCGYC | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 149 |
| Bst2BI | CACGAG | 1 cut(s) | 149 |
| Bst2UI | CCWGG | 3 cut(s) | 117, 191, 373 |
| Bst4CI | ACNGT | 3 cut(s) | 464, 775, 1004 |
| Bst6I | CTCTTC | 2 cut(s) | 189, 245 |
| BstACI | GRCGYC | 1 cut(s) | 51 |
| BstAFI | CTTAAG | 1 cut(s) | 353 |
| BstC8I | GCNNGC | 2 cut(s) | 174, 876 |
| BstDEI | CTNAG | 4 cut(s) | 675, 726, 870, 1038 |
| BstDSI | CCRYGG | 1 cut(s) | 704 |
| BstEII | GGTNACC | 1 cut(s) | 650 |
| BstF5I | GGATG | 2 cut(s) | 580, 1048 |
| BstFNI | CGCG | 3 cut(s) | 72, 159, 225 |
| BstHHI | GCGC | 1 cut(s) | 161 |
| BstKTI | GATC | 6 cut(s) | 81, 189, 313, 643, 1080, 1138 |
| BstMAI | GTCTC | 3 cut(s) | 97, 191, 734 |
| BstMBI | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| BstMCI | CGRYCG | 2 cut(s) | 70, 313 |
| BstNI | CCWGG | 3 cut(s) | 117, 191, 373 |
| BstPI | GGTNACC | 1 cut(s) | 650 |
| BstSCI | CCNGG | 5 cut(s) | 110, 115, 189, 200, 371 |
| BstSFI | CTRYAG | 2 cut(s) | 669, 1111 |
| BstSLI | GKGCMC | 1 cut(s) | 725 |
| BstUI | CGCG | 3 cut(s) | 72, 159, 225 |
| BstV1I | GCAGC | 5 cut(s) | 144, 388, 405, 683, 698 |
| BstX2I | RGATCY | 1 cut(s) | 186 |
| BstYI | RGATCY | 1 cut(s) | 186 |
| BsuRI | GGCC | 6 cut(s) | 115, 176, 237, 371, 517, 723 |
| BtgI | CCRYGG | 1 cut(s) | 704 |
| BtgZI | GCGATG | 1 cut(s) | 1005 |
| BtrI | CACGTC | 1 cut(s) | 1067 |
| BtsCI | GGATG | 2 cut(s) | 580, 1048 |
| BtsI | GCAGTG | 2 cut(s) | 624, 687 |
| BtsIMutI | CAGTG | 4 cut(s) | 624, 687, 1014, 1035 |
| BveI | ACCTGC | 3 cut(s) | 370, 387, 569 |
| Cac8I | GCNNGC | 2 cut(s) | 174, 876 |
| CciI | TCATGA | 1 cut(s) | 643 |
| CfoI | GCGC | 1 cut(s) | 161 |
| Cfr10I | RCCGGY | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 7 cut(s) | 113, 145, 154, 174, 593, 721, 722 |
| CseI | GACGC | 2 cut(s) | 59, 1125 |
| Csp6I | GTAC | 2 cut(s) | 4, 330 |
| CviAII | CATG | 4 cut(s) | 76, 82, 325, 644 |
| CviQI | GTAC | 2 cut(s) | 4, 330 |
| DdeI | CTNAG | 4 cut(s) | 675, 726, 870, 1038 |
| DpnI | GATC | 6 cut(s) | 80, 188, 312, 642, 1079, 1137 |
| DpnII | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| DraIII | CACNNNGTG | 2 cut(s) | 327, 1070 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 152 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 152 |
| Eam1104I | CTCTTC | 2 cut(s) | 189, 245 |
| EarI | CTCTTC | 2 cut(s) | 189, 245 |
| EciI | GGCGGA | 3 cut(s) | 85, 209, 274 |
| Eco24I | GRGCYC | 2 cut(s) | 320, 725 |
| Eco31I | GGTCTC | 1 cut(s) | 191 |
| Eco47I | GGWCC | 3 cut(s) | 145, 154, 593 |
| Eco57I | CTGAAG | 1 cut(s) | 1038 |
| Eco91I | GGTNACC | 1 cut(s) | 650 |
| EcoO109I | RGGNCCY | 2 cut(s) | 721, 722 |
| EcoO65I | GGTNACC | 1 cut(s) | 650 |
| EcoRI | GAATTC | 1 cut(s) | 520 |
| EcoRII | CCWGG | 3 cut(s) | 115, 189, 371 |
| EcoT38I | GRGCYC | 2 cut(s) | 320, 725 |
| Esp3I | CGTCTC | 1 cut(s) | 97 |
| FaeI | CATG | 4 cut(s) | 79, 85, 328, 647 |
| FatI | CATG | 4 cut(s) | 75, 81, 324, 643 |
| FauI | CCCGC | 1 cut(s) | 165 |
| FbaI | TGATCA | 1 cut(s) | 78 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| FokI | GGATG | 2 cut(s) | 587, 1055 |
| FriOI | GRGCYC | 2 cut(s) | 320, 725 |
| FspBI | CTAG | 2 cut(s) | 453, 477 |
| GlaI | GCGC | 1 cut(s) | 160 |
| HaeIII | GGCC | 6 cut(s) | 115, 176, 237, 371, 517, 723 |
| HapII | CCGG | 3 cut(s) | 111, 202, 486 |
| HgaI | GACGC | 2 cut(s) | 59, 1125 |
| HhaI | GCGC | 1 cut(s) | 161 |
| Hin1I | GRCGYC | 1 cut(s) | 51 |
| Hin1II | CATG | 4 cut(s) | 79, 85, 328, 647 |
| Hin6I | GCGC | 1 cut(s) | 159 |
| HinP1I | GCGC | 1 cut(s) | 159 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HinfI | GANTC | 4 cut(s) | 539, 565, 913, 995 |
| HpaII | CCGG | 3 cut(s) | 111, 202, 486 |
| HphI | GGTGA | 1 cut(s) | 662 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 330, 622 |
| Hpy188I | TCNGA | 7 cut(s) | 13, 315, 531, 559, 860, 912, 1000 |
| Hpy188III | TCNNGA | 5 cut(s) | 364, 569, 644, 917, 1052 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 330, 622 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 53, 1071 |
| HpyAV | CCTTC | 4 cut(s) | 361, 756, 795, 956 |
| HpyCH4III | ACNGT | 3 cut(s) | 464, 775, 1004 |
| HpyCH4IV | ACGT | 1 cut(s) | 1066 |
| HpyCH4V | TGCA | 6 cut(s) | 404, 430, 578, 671, 854, 1151 |
| HpyF3I | CTNAG | 4 cut(s) | 675, 726, 870, 1038 |
| HpySE526I | ACGT | 1 cut(s) | 1066 |
| Hsp92I | GRCGYC | 1 cut(s) | 51 |
| Hsp92II | CATG | 4 cut(s) | 79, 85, 328, 647 |
| HspAI | GCGC | 1 cut(s) | 159 |
| Ksp22I | TGATCA | 1 cut(s) | 78 |
| Kzo9I | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| LmnI | GCTCC | 2 cut(s) | 274, 315 |
| Lsp1109I | GCAGC | 5 cut(s) | 144, 388, 405, 683, 698 |
| LweI | GCATC | 2 cut(s) | 565, 817 |
| MaeI | CTAG | 2 cut(s) | 453, 477 |
| MaeII | ACGT | 1 cut(s) | 1066 |
| MaeIII | GTNAC | 2 cut(s) | 464, 650 |
| MalI | GATC | 6 cut(s) | 80, 188, 312, 642, 1079, 1137 |
| MboI | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| MboII | GAAGA | 5 cut(s) | 178, 206, 232, 1031, 1130 |
| MfeI | CAATTG | 1 cut(s) | 27 |
| MflI | RGATCY | 1 cut(s) | 186 |
| MhlI | GDGCHC | 2 cut(s) | 320, 725 |
| MluCI | AATT | 4 cut(s) | 27, 520, 709, 1100 |
| MlyI | GAGTC | 2 cut(s) | 574, 922 |
| MmeI | TCCRAC | 3 cut(s) | 282, 618, 867 |
| MseI | TTAA | 5 cut(s) | 354, 834, 975, 1085, 1094 |
| MslI | CAYNNNNRTG | 3 cut(s) | 80, 648, 957 |
| MspA1I | CMGCKG | 3 cut(s) | 135, 674, 824 |
| MspCI | CTTAAG | 1 cut(s) | 353 |
| MspI | CCGG | 3 cut(s) | 111, 202, 486 |
| MspR9I | CCNGG | 5 cut(s) | 112, 117, 191, 202, 373 |
| MunI | CAATTG | 1 cut(s) | 27 |
| Mva1269I | GAATGC | 1 cut(s) | 854 |
| MvaI | CCWGG | 3 cut(s) | 117, 191, 373 |
| MvnI | CGCG | 3 cut(s) | 72, 159, 225 |
| NciI | CCSGG | 2 cut(s) | 112, 202 |
| NdeII | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| NlaIII | CATG | 4 cut(s) | 79, 85, 328, 647 |
| NlaIV | GGNNCC | 4 cut(s) | 188, 206, 317, 723 |
| NmeAIII | GCCGAG | 1 cut(s) | 202 |
| NmuCI | GTSAC | 1 cut(s) | 650 |
| PagI | TCATGA | 1 cut(s) | 643 |
| PctI | GAATGC | 1 cut(s) | 854 |
| PfeI | GAWTC | 2 cut(s) | 539, 995 |
| PfoI | TCCNGGA | 1 cut(s) | 189 |
| Ple19I | CGATCG | 1 cut(s) | 313 |
| PleI | GAGTC | 2 cut(s) | 573, 921 |
| PpsI | GAGTC | 2 cut(s) | 573, 921 |
| PsiI | TTATAA | 2 cut(s) | 510, 770 |
| Psp6I | CCWGG | 3 cut(s) | 115, 189, 371 |
| PspEI | GGTNACC | 1 cut(s) | 650 |
| PspGI | CCWGG | 3 cut(s) | 115, 189, 371 |
| PspN4I | GGNNCC | 4 cut(s) | 188, 206, 317, 723 |
| PspOMI | GGGCCC | 1 cut(s) | 721 |
| PspPI | GGNCC | 7 cut(s) | 113, 145, 154, 174, 593, 721, 722 |
| PstI | CTGCAG | 1 cut(s) | 673 |
| PsuI | RGATCY | 1 cut(s) | 186 |
| PvuI | CGATCG | 1 cut(s) | 313 |
| PvuII | CAGCTG | 2 cut(s) | 674, 824 |
| RsaI | GTAC | 2 cut(s) | 5, 331 |
| RsaNI | GTAC | 2 cut(s) | 4, 330 |
| RseI | CAYNNNNRTG | 3 cut(s) | 80, 648, 957 |
| SalI | GTCGAC | 1 cut(s) | 47 |
| SaqAI | TTAA | 5 cut(s) | 354, 834, 975, 1085, 1094 |
| Sau3AI | GATC | 6 cut(s) | 78, 186, 310, 640, 1077, 1135 |
| Sau96I | GGNCC | 7 cut(s) | 113, 145, 154, 174, 593, 721, 722 |
| SchI | GAGTC | 2 cut(s) | 574, 922 |
| ScrFI | CCNGG | 5 cut(s) | 112, 117, 191, 202, 373 |
| SduI | GDGCHC | 2 cut(s) | 320, 725 |
| SfaNI | GCATC | 2 cut(s) | 565, 817 |
| SfcI | CTRYAG | 2 cut(s) | 669, 1111 |
| SgrDI | CGTCGACG | 1 cut(s) | 47 |
| SinI | GGWCC | 3 cut(s) | 145, 154, 593 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 80, 648, 957 |
| SmlI | CTYRAG | 2 cut(s) | 353, 569 |
| SmoI | CTYRAG | 2 cut(s) | 353, 569 |
| Sse9I | AATT | 4 cut(s) | 27, 520, 709, 1100 |
| SspMI | CTAG | 2 cut(s) | 453, 477 |
| StyD4I | CCNGG | 5 cut(s) | 110, 115, 189, 200, 371 |
| TaaI | ACNGT | 3 cut(s) | 464, 775, 1004 |
| TaiI | ACGT | 1 cut(s) | 1069 |
| TaqI | TCGA | 4 cut(s) | 48, 231, 309, 537 |
| TaqII | GACCGA | 1 cut(s) | 624 |
| TasI | AATT | 4 cut(s) | 27, 520, 709, 1100 |
| TauI | GCSGC | 5 cut(s) | 101, 110, 138, 141, 225 |
| TfiI | GAWTC | 2 cut(s) | 539, 995 |
| Tru1I | TTAA | 5 cut(s) | 354, 834, 975, 1085, 1094 |
| Tru9I | TTAA | 5 cut(s) | 354, 834, 975, 1085, 1094 |
| TscAI | CASTG | 4 cut(s) | 624, 687, 1021, 1042 |
| TseFI | GTSAC | 1 cut(s) | 650 |
| TseI | GCWGC | 5 cut(s) | 132, 376, 393, 671, 686 |
| Tsp45I | GTSAC | 1 cut(s) | 650 |
| TspDTI | ATGAA | 3 cut(s) | 535, 975, 1008 |
| TspGWI | ACGGA | 4 cut(s) | 34, 347, 576, 693 |
| TspRI | CASTG | 4 cut(s) | 624, 687, 1021, 1042 |
| Vha464I | CTTAAG | 1 cut(s) | 353 |
| VpaK11BI | GGWCC | 3 cut(s) | 145, 154, 593 |
| XapI | RAATTY | 1 cut(s) | 520 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XspI | CTAG | 2 cut(s) | 453, 477 |