RLG00000022260
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
82047922 .. 82050228
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022260

Sequence Viewer

Length: 1167 bp
ATGTACCTCTCCGAAAAGCCCCACCCAATTGATTTCTACAAGTCCGTCGACGCCTCCTCCTCCCCCGACCGCGACATGATCATGGAGGTCGTCTCCGCCGCCAACGCCGCCGGGCCAGGTGGCAACACCAGCAGCGGCGGCGAGGACCACGAGGTCCGCGCCCCGAAGAAGCGGGCCGAGCATTGGATCCAGGAAGAGACCCGGTGCCTCATCGGCTTCCGCCGCGAGGTCGATGGCCTCTTCAACACCTCCAAGTCCAACAAGCACCTCTGGGAGCAAATCTCCGCCAAGATGAGGGATAAAGGGTTCGATCGGAGCCCCACCATGTGTACGGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCCAGGCAGCAGGTCAAGGTGGGCAGCAGGTCTGCAAAGATGTTGTATTACGAGGACTTGCAGGAGTTGATTAGGGATAGGACTAGCCATAACAGTAACAATGGTGCTAGTAATGCCGGTAGTAATGGCGGTGCTGGTTATAAGAGGCCGAATTCTCCTCCGAAGCTCGAATCTTTCATTCGTTTCTCTGATAAGAGTCTTGAGGATGCAGGTATTCCGTTTGGACCAATGGAAGCTGACCGAACAGCAGTGGACTTGGAAAGGCAGTTGGATCATGATGGTGACCCTCTGGCTATTACTGCAGCTGAGGCAGTGGCAGCCAACGAAGTTCCTCCGTGGAATTGGAGGGAGGGCCCTGAGAATGGAGGGGAGACACACTCATCTTTTTGTGGAAGGATTATAACTGTCAAGTTGGGGGAATACAACACCAGAAGGATTGGTATTGATGGAACAGCTGATGCGATTAAGGAGGCAATCAAGTCTGCATTCAGAATAAGAACTAAGCGAGCATTTTGGTTGGAGGACGAGTATCAGGTTGTTCGGAGTCTTGATAGGGATATGCCTTTGGGCAGTTATACTCTCCACCTTGATGAAGGAATAACCATTAAACTTTGCCTCTGCGATGAATCTGACCGTATAGTTCGCACTGAAGAAATAACATTCTACACTGAGGATGACTTTCGTGATTTCCTTTCACGTCGTGGCTTGATCGGTTTAAGAGATTTAAGAGAATTAGGTGGCTACAGACGCATTGATACTTTAGATGATCTTCAATCTGGTGCAATGTATCAGGGGTGA

Protein Analysis

389

Amino Acids

43.8

Weight (kDa)

5.76

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 61 - 146 1.8e-21 Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1 PF26214 255 - 316 1.4e-09 GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1 PF26214 321 - 388 3.1e-27 GT-1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 510, 770
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 3 cut(s) 370, 387, 569
AccB1I GGYRCC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 48
AccII CGCG 3 cut(s) 72, 159, 225
AclWI GGATC 3 cut(s) 181, 194, 648
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 1038
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 2 cut(s) 327, 1070
AfaI GTAC 2 cut(s) 5, 331
AfiI CCNNNNNNNGG 4 cut(s) 183, 226, 294, 731
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 3 cut(s) 244, 364, 1142
AjiI CACGTC 1 cut(s) 1067
AjnI CCWGG 3 cut(s) 115, 189, 371
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 4 cut(s) 535, 605, 674, 824
AluI AGCT 4 cut(s) 535, 605, 674, 824
Alw26I GTCTC 3 cut(s) 97, 191, 734
AlwI GGATC 3 cut(s) 181, 194, 648
AoxI GGCC 6 cut(s) 113, 174, 235, 369, 515, 721
ApaI GGGCCC 1 cut(s) 725
ApeKI GCWGC 5 cut(s) 132, 376, 393, 671, 686
ApoI RAATTY 1 cut(s) 520
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 7 cut(s) 113, 145, 154, 174, 593, 721, 722
AsuC2I CCSGG 2 cut(s) 112, 202
AsuHPI GGTGA 1 cut(s) 662
AvaII GGWCC 3 cut(s) 145, 154, 593
BaeGI GKGCMC 1 cut(s) 725
BamHI GGATCC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 2 cut(s) 320, 725
BauI CACGAG 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 5 cut(s) 144, 388, 405, 683, 698
BccI CCATC 3 cut(s) 227, 641, 809
BciT130I CCWGG 3 cut(s) 117, 191, 373
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 112, 202
BcoDI GTCTC 3 cut(s) 97, 191, 734
BfaI CTAG 2 cut(s) 453, 477
BfmI CTRYAG 2 cut(s) 669, 1111
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 3 cut(s) 370, 387, 569
BglI GCCNNNNNGGC 1 cut(s) 213
Bme1390I CCNGG 5 cut(s) 112, 117, 191, 202, 373
Bme18I GGWCC 3 cut(s) 145, 154, 593
BmgBI CACGTC 1 cut(s) 1067
BmgT120I GGNCC 7 cut(s) 113, 145, 154, 174, 593, 721, 722
BmiI GGNNCC 4 cut(s) 188, 206, 317, 723
BmrFI CCNGG 5 cut(s) 112, 117, 191, 202, 373
BmsI GCATC 2 cut(s) 565, 817
BplI GAGNNNNNCTC 6 cut(s) 77, 109, 266, 298, 731, 763
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 2 cut(s) 112, 202
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 704
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 881, 911
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 226, 294, 731
Bse118I RCCGGY 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 1158
BseBI CCWGG 3 cut(s) 117, 191, 373
BseDI CCNNGG 1 cut(s) 704
BseGI GGATG 2 cut(s) 580, 1048
BseLI CCNNNNNNNGG 4 cut(s) 183, 226, 294, 731
BseMI GCAATG 1 cut(s) 1158
BseMII CTCAG 3 cut(s) 666, 717, 1029
BseRI GAGGAG 3 cut(s) 46, 49, 516
BseSI GKGCMC 1 cut(s) 725
BseXI GCAGC 5 cut(s) 144, 388, 405, 683, 698
Bsh1236I CGCG 3 cut(s) 72, 159, 225
Bsh1285I CGRYCG 2 cut(s) 70, 313
BshFI GGCC 6 cut(s) 115, 176, 237, 371, 517, 723
BshNI GGYRCC 1 cut(s) 204
BsiEI CGRYCG 2 cut(s) 70, 313
BsiSI CCGG 3 cut(s) 111, 202, 486
BslI CCNNNNNNNGG 4 cut(s) 183, 226, 294, 731
BsmAI GTCTC 3 cut(s) 97, 191, 734
BsmBI CGTCTC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 854
BsnI GGCC 6 cut(s) 115, 176, 237, 371, 517, 723
Bso31I GGTCTC 1 cut(s) 191
Bsp120I GGGCCC 1 cut(s) 721
Bsp1286I GDGCHC 2 cut(s) 320, 725
Bsp143I GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
BspANI GGCC 6 cut(s) 115, 176, 237, 371, 517, 723
BspCNI CTCAG 3 cut(s) 667, 718, 1030
BspFNI CGCG 3 cut(s) 72, 159, 225
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 4 cut(s) 188, 206, 317, 723
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 3 cut(s) 370, 387, 569
BspPI GGATC 3 cut(s) 181, 194, 648
BspT107I GGYRCC 1 cut(s) 204
BspTI CTTAAG 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 1158
BsrFI RCCGGY 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 704
BssMI GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 3 cut(s) 117, 191, 373
Bst4CI ACNGT 3 cut(s) 464, 775, 1004
Bst6I CTCTTC 2 cut(s) 189, 245
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 174, 876
BstDEI CTNAG 4 cut(s) 675, 726, 870, 1038
BstDSI CCRYGG 1 cut(s) 704
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 2 cut(s) 580, 1048
BstFNI CGCG 3 cut(s) 72, 159, 225
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 6 cut(s) 81, 189, 313, 643, 1080, 1138
BstMAI GTCTC 3 cut(s) 97, 191, 734
BstMBI GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
BstMCI CGRYCG 2 cut(s) 70, 313
BstNI CCWGG 3 cut(s) 117, 191, 373
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 5 cut(s) 110, 115, 189, 200, 371
BstSFI CTRYAG 2 cut(s) 669, 1111
BstSLI GKGCMC 1 cut(s) 725
BstUI CGCG 3 cut(s) 72, 159, 225
BstV1I GCAGC 5 cut(s) 144, 388, 405, 683, 698
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 6 cut(s) 115, 176, 237, 371, 517, 723
BtgI CCRYGG 1 cut(s) 704
BtgZI GCGATG 1 cut(s) 1005
BtrI CACGTC 1 cut(s) 1067
BtsCI GGATG 2 cut(s) 580, 1048
BtsI GCAGTG 2 cut(s) 624, 687
BtsIMutI CAGTG 4 cut(s) 624, 687, 1014, 1035
BveI ACCTGC 3 cut(s) 370, 387, 569
Cac8I GCNNGC 2 cut(s) 174, 876
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 7 cut(s) 113, 145, 154, 174, 593, 721, 722
CseI GACGC 2 cut(s) 59, 1125
Csp6I GTAC 2 cut(s) 4, 330
CviAII CATG 4 cut(s) 76, 82, 325, 644
CviQI GTAC 2 cut(s) 4, 330
DdeI CTNAG 4 cut(s) 675, 726, 870, 1038
DpnI GATC 6 cut(s) 80, 188, 312, 642, 1079, 1137
DpnII GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
DraIII CACNNNGTG 2 cut(s) 327, 1070
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 189, 245
EarI CTCTTC 2 cut(s) 189, 245
EciI GGCGGA 3 cut(s) 85, 209, 274
Eco24I GRGCYC 2 cut(s) 320, 725
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 145, 154, 593
Eco57I CTGAAG 1 cut(s) 1038
Eco91I GGTNACC 1 cut(s) 650
EcoO109I RGGNCCY 2 cut(s) 721, 722
EcoO65I GGTNACC 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 3 cut(s) 115, 189, 371
EcoT38I GRGCYC 2 cut(s) 320, 725
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 4 cut(s) 79, 85, 328, 647
FatI CATG 4 cut(s) 75, 81, 324, 643
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 48
FokI GGATG 2 cut(s) 587, 1055
FriOI GRGCYC 2 cut(s) 320, 725
FspBI CTAG 2 cut(s) 453, 477
GlaI GCGC 1 cut(s) 160
HaeIII GGCC 6 cut(s) 115, 176, 237, 371, 517, 723
HapII CCGG 3 cut(s) 111, 202, 486
HgaI GACGC 2 cut(s) 59, 1125
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 79, 85, 328, 647
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 4 cut(s) 539, 565, 913, 995
HpaII CCGG 3 cut(s) 111, 202, 486
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 3 cut(s) 49, 330, 622
Hpy188I TCNGA 7 cut(s) 13, 315, 531, 559, 860, 912, 1000
Hpy188III TCNNGA 5 cut(s) 364, 569, 644, 917, 1052
Hpy8I GTNNAC 3 cut(s) 49, 330, 622
Hpy99I CGWCG 3 cut(s) 50, 53, 1071
HpyAV CCTTC 4 cut(s) 361, 756, 795, 956
HpyCH4III ACNGT 3 cut(s) 464, 775, 1004
HpyCH4IV ACGT 1 cut(s) 1066
HpyCH4V TGCA 6 cut(s) 404, 430, 578, 671, 854, 1151
HpyF3I CTNAG 4 cut(s) 675, 726, 870, 1038
HpySE526I ACGT 1 cut(s) 1066
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 79, 85, 328, 647
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
LmnI GCTCC 2 cut(s) 274, 315
Lsp1109I GCAGC 5 cut(s) 144, 388, 405, 683, 698
LweI GCATC 2 cut(s) 565, 817
MaeI CTAG 2 cut(s) 453, 477
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 2 cut(s) 464, 650
MalI GATC 6 cut(s) 80, 188, 312, 642, 1079, 1137
MboI GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
MboII GAAGA 5 cut(s) 178, 206, 232, 1031, 1130
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 320, 725
MluCI AATT 4 cut(s) 27, 520, 709, 1100
MlyI GAGTC 2 cut(s) 574, 922
MmeI TCCRAC 3 cut(s) 282, 618, 867
MseI TTAA 5 cut(s) 354, 834, 975, 1085, 1094
MslI CAYNNNNRTG 3 cut(s) 80, 648, 957
MspA1I CMGCKG 3 cut(s) 135, 674, 824
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 3 cut(s) 111, 202, 486
MspR9I CCNGG 5 cut(s) 112, 117, 191, 202, 373
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 854
MvaI CCWGG 3 cut(s) 117, 191, 373
MvnI CGCG 3 cut(s) 72, 159, 225
NciI CCSGG 2 cut(s) 112, 202
NdeII GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
NlaIII CATG 4 cut(s) 79, 85, 328, 647
NlaIV GGNNCC 4 cut(s) 188, 206, 317, 723
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 650
PagI TCATGA 1 cut(s) 643
PctI GAATGC 1 cut(s) 854
PfeI GAWTC 2 cut(s) 539, 995
PfoI TCCNGGA 1 cut(s) 189
Ple19I CGATCG 1 cut(s) 313
PleI GAGTC 2 cut(s) 573, 921
PpsI GAGTC 2 cut(s) 573, 921
PsiI TTATAA 2 cut(s) 510, 770
Psp6I CCWGG 3 cut(s) 115, 189, 371
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 3 cut(s) 115, 189, 371
PspN4I GGNNCC 4 cut(s) 188, 206, 317, 723
PspOMI GGGCCC 1 cut(s) 721
PspPI GGNCC 7 cut(s) 113, 145, 154, 174, 593, 721, 722
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 186
PvuI CGATCG 1 cut(s) 313
PvuII CAGCTG 2 cut(s) 674, 824
RsaI GTAC 2 cut(s) 5, 331
RsaNI GTAC 2 cut(s) 4, 330
RseI CAYNNNNRTG 3 cut(s) 80, 648, 957
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 5 cut(s) 354, 834, 975, 1085, 1094
Sau3AI GATC 6 cut(s) 78, 186, 310, 640, 1077, 1135
Sau96I GGNCC 7 cut(s) 113, 145, 154, 174, 593, 721, 722
SchI GAGTC 2 cut(s) 574, 922
ScrFI CCNGG 5 cut(s) 112, 117, 191, 202, 373
SduI GDGCHC 2 cut(s) 320, 725
SfaNI GCATC 2 cut(s) 565, 817
SfcI CTRYAG 2 cut(s) 669, 1111
SgrDI CGTCGACG 1 cut(s) 47
SinI GGWCC 3 cut(s) 145, 154, 593
SmiMI CAYNNNNRTG 3 cut(s) 80, 648, 957
SmlI CTYRAG 2 cut(s) 353, 569
SmoI CTYRAG 2 cut(s) 353, 569
Sse9I AATT 4 cut(s) 27, 520, 709, 1100
SspMI CTAG 2 cut(s) 453, 477
StyD4I CCNGG 5 cut(s) 110, 115, 189, 200, 371
TaaI ACNGT 3 cut(s) 464, 775, 1004
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 4 cut(s) 48, 231, 309, 537
TaqII GACCGA 1 cut(s) 624
TasI AATT 4 cut(s) 27, 520, 709, 1100
TauI GCSGC 5 cut(s) 101, 110, 138, 141, 225
TfiI GAWTC 2 cut(s) 539, 995
Tru1I TTAA 5 cut(s) 354, 834, 975, 1085, 1094
Tru9I TTAA 5 cut(s) 354, 834, 975, 1085, 1094
TscAI CASTG 4 cut(s) 624, 687, 1021, 1042
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 5 cut(s) 132, 376, 393, 671, 686
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 3 cut(s) 535, 975, 1008
TspGWI ACGGA 4 cut(s) 34, 347, 576, 693
TspRI CASTG 4 cut(s) 624, 687, 1021, 1042
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 3 cut(s) 145, 154, 593
XapI RAATTY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 453, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.