MD17G1017400.v1.1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
1380631 .. 1383427
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1017400.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGTACCTCTTGGAGAAGCCCCGCGCCGTTGACTTATACAAGGGAGGAGGACTAGACCAAGAAACGGAGACAGAGATGATGATGGATGTGGCGGCGGTGAATGGGAGAGCGCCACCTCACCACCAAAACCAAAACGAACGAGAGCAGCAGCAGAGCAGCGGTGGCGAGGGGGAGGAGCAGGAATTGTGTGCGGCTGTGAGCAGCAGAGCAGGAGGCGGTCCGGGCGGTGCCGCCGGGCCGAAGAAACGGGCGGAGACGTGGGTCCAGGAGGAGACCCGGAGCTTGATAGGGTTTAGGAGAGAGGTAGACGGGCTTTTCAACACGTCAAAGTCCAACAGGCACCTGTGGGACCAGATCTCGGCGCGGATGAGGGAAAAGGGCTTCGACCGATCGCCCACCATGTGTACGGACAAGTGGCGGAACTTGCTCAAGGAGTTCAAGAAGGCTCGCCACCAAGTTAAAGTCGGTGCTCGCTCTGCCAAGATGTCTTATTACGAGGACCTCCAGGACTTGCTCAGAGATCGCTCCACCAATTCCAACTCCGCCACCGCCAACAGCAACCACAATTCTGTTTCTGCTGCCGCCGCCGCCGTTGCCACTCCTCCCAAGTTAGATTCTTTCGTTCGATTTTCTGATAAAGGTCTTGAGGATTCAACTATTCCATTTGGGCCTATGGAAGCTAATGACCGATCGGCGCTCAATTTGGAGAGGCAGCTGGATCACGACGGCGGTGACCCGCTTGCTATTACTGCCGCGGATGCGGTTGCAGTCAATGGGGTTCCTCCTTGGAACTGGAGGGAGGGTCCTGAAAACGGAGGGGAGGACCACTCTTCTTACTGTGGAAGGATTATAACTGTCAAATTGGGGGAATACACCAGAAGGATTGGAATTGATGGGACTGGTGAAGCAATTAAGGAGGCGATCAAGTCTGCGTTCAGAATAAGAACTAAGCGGGCATTTTGGTTGGAGGACGAAGATCAGGTTGTTCGAAGTCTTGATAGGGATATGCCTTTGGGAAATTACACTCTCCACCTTGACGAAGGAATTACAATCAAACTTTGCCTCTACGATGACTCTGACCGCATAGTTCGAACTGAAGAAATAACATTGTACACTGAGGATGATTTTCGTGATTTTCTTGCACGCCGAGGCTTGATGGGTTTGAGAGAGTTAAGTGGCTACAGACGCATCGATACTTTAGATGATCTTCATTCTGGTGCAATGTACCAGGGGGTGCGACTTCTGGTGGACTGA

Protein Analysis

418

Amino Acids

46.62

Weight (kDa)

5.48

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 86 - 171 7e-21 Myb/SANT-like DNA-binding domain
Ubiquitin_GT-1 PF26214 282 - 342 2e-09 GT-1-like, ubiquitin-like domain
Ubiquitin_GT-1 PF26214 347 - 411 4.8e-29 GT-1-like, ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 851
AccB1I GGYRCC 2 cut(s) 227, 339
AccI GTMKAC 1 cut(s) 306
AccII CGCG 3 cut(s) 24, 364, 755
AclWI GGATC 1 cut(s) 726
AcuI CTGAAG 1 cut(s) 1116
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 4 cut(s) 5, 406, 1112, 1226
AfiI CCNNNNNNNGG 3 cut(s) 64, 358, 812
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 3 cut(s) 319, 439, 654
AjiI CACGTC 2 cut(s) 258, 324
AjnI CCWGG 3 cut(s) 264, 504, 1227
AluBI AGCT 3 cut(s) 282, 680, 715
AluI AGCT 3 cut(s) 282, 680, 715
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 3 cut(s) 62, 248, 266
AlwI GGATC 1 cut(s) 726
AoxI GGCC 2 cut(s) 236, 668
ApeKI GCWGC 6 cut(s) 145, 148, 156, 201, 578, 712
AspLEI GCGC 4 cut(s) 26, 112, 364, 697
AspS9I GGNCC 8 cut(s) 218, 236, 262, 349, 499, 668, 803, 823
AsuC2I CCSGG 3 cut(s) 222, 235, 277
AsuHPI GGTGA 4 cut(s) 109, 110, 743, 914
AsuII TTCGAA 2 cut(s) 988, 1090
AvaII GGWCC 6 cut(s) 218, 262, 349, 499, 803, 823
BanI GGYRCC 2 cut(s) 227, 339
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 6 cut(s) 157, 160, 168, 213, 565, 724
BccI CCATC 3 cut(s) 76, 887, 1150
BceAI ACGGC 3 cut(s) 11, 575, 742
BciT130I CCWGG 3 cut(s) 266, 506, 1229
BcnI CCSGG 3 cut(s) 222, 235, 277
BcoDI GTCTC 3 cut(s) 62, 248, 266
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 1180
BfoI RGCGCY 2 cut(s) 113, 698
BglII AGATCT 1 cut(s) 354
Bme1390I CCNGG 6 cut(s) 222, 235, 266, 277, 506, 1229
Bme18I GGWCC 6 cut(s) 218, 262, 349, 499, 803, 823
BmgBI CACGTC 2 cut(s) 258, 324
BmgT120I GGNCC 8 cut(s) 218, 236, 262, 349, 499, 668, 803, 823
BmiI GGNNCC 6 cut(s) 229, 263, 341, 350, 780, 804
BmrFI CCNGG 6 cut(s) 222, 235, 266, 277, 506, 1229
BmsI GCATC 2 cut(s) 748, 1197
BoxI GACNNNNGTC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 2 cut(s) 488, 814
Bpu14I TTCGAA 2 cut(s) 988, 1090
BpuEI CTTGAG 2 cut(s) 413, 665
BpuMI CCSGG 3 cut(s) 222, 235, 277
Bsa29I ATCGAT 1 cut(s) 1191
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 4 cut(s) 753, 785, 1147, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 358, 812
Bse1I ACTGG 2 cut(s) 797, 904
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 3 cut(s) 266, 506, 1229
BseCI ATCGAT 1 cut(s) 1191
BseDI CCNNGG 4 cut(s) 753, 785, 1147, 1228
BseGI GGATG 4 cut(s) 91, 372, 763, 1126
BseLI CCNNNNNNNGG 3 cut(s) 64, 358, 812
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 2 cut(s) 529, 1107
BseNI ACTGG 2 cut(s) 797, 904
BseRI GAGGAG 4 cut(s) 60, 188, 284, 591
BseXI GCAGC 6 cut(s) 157, 160, 168, 213, 565, 724
Bsh1236I CGCG 3 cut(s) 24, 364, 755
Bsh1285I CGRYCG 3 cut(s) 388, 392, 692
BshFI GGCC 2 cut(s) 238, 670
BshNI GGYRCC 2 cut(s) 227, 339
BshVI ATCGAT 1 cut(s) 1191
BsiEI CGRYCG 3 cut(s) 388, 392, 692
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 3 cut(s) 221, 234, 277
BslFI GGGAC 2 cut(s) 362, 910
BslI CCNNNNNNNGG 3 cut(s) 64, 358, 812
BsmAI GTCTC 3 cut(s) 62, 248, 266
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 362, 910
BsnI GGCC 2 cut(s) 238, 670
Bso31I GGTCTC 1 cut(s) 266
Bsp119I TTCGAA 2 cut(s) 988, 1090
Bsp1286I GDGCHC 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 1110
Bsp143I GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
BspANI GGCC 2 cut(s) 238, 670
BspCNI CTCAG 2 cut(s) 528, 1108
BspDI ATCGAT 1 cut(s) 1191
BspFNI CGCG 3 cut(s) 24, 364, 755
BspLI GGNNCC 6 cut(s) 229, 263, 341, 350, 780, 804
BspPI GGATC 1 cut(s) 726
BspT104I TTCGAA 2 cut(s) 988, 1090
BspT107I GGYRCC 2 cut(s) 227, 339
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 1227
BsrGI TGTACA 1 cut(s) 1110
BsrI ACTGG 2 cut(s) 797, 904
BssECI CCNNGG 4 cut(s) 753, 785, 1147, 1228
BssMI GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
BssT1I CCWWGG 1 cut(s) 785
Bst2UI CCWGG 3 cut(s) 266, 506, 1229
Bst4CI ACNGT 2 cut(s) 839, 856
Bst6I CTCTTC 1 cut(s) 835
BstAUI TGTACA 1 cut(s) 1110
BstBI TTCGAA 2 cut(s) 988, 1090
BstC8I GCNNGC 5 cut(s) 448, 472, 741, 954, 1144
BstDEI CTNAG 3 cut(s) 515, 948, 1116
BstDSI CCRYGG 1 cut(s) 753
BstEII GGTNACC 1 cut(s) 731
BstF5I GGATG 4 cut(s) 91, 372, 763, 1126
BstFNI CGCG 3 cut(s) 24, 364, 755
BstH2I RGCGCY 2 cut(s) 113, 698
BstHHI GCGC 4 cut(s) 26, 112, 364, 697
BstKTI GATC 8 cut(s) 357, 392, 523, 692, 721, 924, 979, 1207
BstMAI GTCTC 3 cut(s) 62, 248, 266
BstMBI GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
BstMCI CGRYCG 3 cut(s) 388, 392, 692
BstNI CCWGG 3 cut(s) 266, 506, 1229
BstPAI GACNNNNGTC 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 731
BstSCI CCNGG 6 cut(s) 220, 233, 264, 275, 504, 1227
BstSFI CTRYAG 1 cut(s) 1180
BstUI CGCG 3 cut(s) 24, 364, 755
BstV1I GCAGC 6 cut(s) 157, 160, 168, 213, 565, 724
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 1191
BsuRI GGCC 2 cut(s) 238, 670
BsuTUI ATCGAT 1 cut(s) 1191
BtgI CCRYGG 1 cut(s) 753
BtrI CACGTC 2 cut(s) 258, 324
BtsCI GGATG 4 cut(s) 91, 372, 763, 1126
BtsIMutI CAGTG 1 cut(s) 1113
Cac8I GCNNGC 5 cut(s) 448, 472, 741, 954, 1144
CfoI GCGC 4 cut(s) 26, 112, 364, 697
Cfr13I GGNCC 8 cut(s) 218, 236, 262, 349, 499, 668, 803, 823
Cfr42I CCGCGG 1 cut(s) 756
ClaI ATCGAT 1 cut(s) 1191
CpoI CGGWCCG 1 cut(s) 218
CseI GACGC 1 cut(s) 1194
Csp6I GTAC 4 cut(s) 4, 405, 1111, 1225
CspI CGGWCCG 1 cut(s) 218
CviAII CATG 1 cut(s) 400
CviQI GTAC 4 cut(s) 4, 405, 1111, 1225
DdeI CTNAG 3 cut(s) 515, 948, 1116
DpnI GATC 8 cut(s) 356, 391, 522, 691, 720, 923, 978, 1206
DpnII GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
DraIII CACNNNGTG 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 835
EciI GGCGGA 3 cut(s) 266, 433, 532
Eco130I CCWWGG 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 6 cut(s) 218, 262, 349, 499, 803, 823
Eco57I CTGAAG 1 cut(s) 1116
Eco91I GGTNACC 1 cut(s) 731
EcoO109I RGGNCCY 2 cut(s) 499, 803
EcoO65I GGTNACC 1 cut(s) 731
EcoRII CCWGG 3 cut(s) 264, 504, 1227
EcoT14I CCWWGG 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 785
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 1 cut(s) 403
FaiI YATR 6 cut(s) 37, 401, 674, 851, 1007, 1085
FaqI GGGAC 2 cut(s) 362, 910
FatI CATG 1 cut(s) 399
FauI CCCGC 3 cut(s) 29, 744, 945
FblI GTMKAC 1 cut(s) 306
FokI GGATG 4 cut(s) 98, 379, 770, 1133
FspBI CTAG 1 cut(s) 53
GlaI GCGC 4 cut(s) 25, 111, 363, 696
GsuI CTGGAG 2 cut(s) 488, 814
HaeII RGCGCY 2 cut(s) 113, 698
HaeIII GGCC 2 cut(s) 238, 670
HapII CCGG 3 cut(s) 221, 234, 277
HgaI GACGC 1 cut(s) 1194
HhaI GCGC 4 cut(s) 26, 112, 364, 697
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 4 cut(s) 24, 110, 362, 695
HinP1I GCGC 4 cut(s) 24, 110, 362, 695
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 614, 650, 1073
HpaII CCGG 3 cut(s) 221, 234, 277
HphI GGTGA 4 cut(s) 109, 110, 743, 914
Hpy166II GTNNAC 5 cut(s) 31, 307, 405, 1113, 1249
Hpy188I TCNGA 4 cut(s) 518, 634, 938, 1078
Hpy188III TCNNGA 6 cut(s) 439, 644, 722, 806, 995, 1130
Hpy8I GTNNAC 5 cut(s) 31, 307, 405, 1113, 1249
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 4 cut(s) 436, 837, 873, 1034
HpyCH4III ACNGT 2 cut(s) 839, 856
HpyCH4IV ACGT 2 cut(s) 257, 323
HpyCH4V TGCA 3 cut(s) 767, 1142, 1220
HpyF3I CTNAG 3 cut(s) 515, 948, 1116
HpySE526I ACGT 2 cut(s) 257, 323
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 4 cut(s) 24, 110, 362, 695
KspI CCGCGG 1 cut(s) 756
Kzo9I GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
LmnI GCTCC 3 cut(s) 175, 279, 530
Lsp1109I GCAGC 6 cut(s) 157, 160, 168, 213, 565, 724
LweI GCATC 2 cut(s) 748, 1197
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 257, 323
MaeIII GTNAC 1 cut(s) 731
MalI GATC 8 cut(s) 356, 391, 522, 691, 720, 923, 978, 1206
MboI GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
MboII GAAGA 5 cut(s) 253, 822, 986, 1109, 1199
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 9 cut(s) 182, 532, 565, 700, 860, 888, 909, 1018, 1044
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 3 cut(s) 357, 561, 945
MseI TTAA 3 cut(s) 459, 912, 1172
MslI CAYNNNNRTG 1 cut(s) 1215
MspA1I CMGCKG 3 cut(s) 159, 715, 755
MspI CCGG 3 cut(s) 221, 234, 277
MspR9I CCNGG 6 cut(s) 222, 235, 266, 277, 506, 1229
MvaI CCWGG 3 cut(s) 266, 506, 1229
MvnI CGCG 3 cut(s) 24, 364, 755
NciI CCSGG 3 cut(s) 222, 235, 277
NdeII GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 6 cut(s) 229, 263, 341, 350, 780, 804
NmeAIII GCCGAG 2 cut(s) 338, 1172
NmuCI GTSAC 1 cut(s) 731
NspV TTCGAA 2 cut(s) 988, 1090
PfeI GAWTC 2 cut(s) 614, 650
PfoI TCCNGGA 2 cut(s) 264, 504
Ple19I CGATCG 2 cut(s) 392, 692
PleI GAGTC 1 cut(s) 1067
PpsI GAGTC 1 cut(s) 1067
PpuMI RGGWCCY 2 cut(s) 499, 803
PshAI GACNNNNGTC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 851
Psp5II RGGWCCY 2 cut(s) 499, 803
Psp6I CCWGG 3 cut(s) 264, 504, 1227
PspEI GGTNACC 1 cut(s) 731
PspGI CCWGG 3 cut(s) 264, 504, 1227
PspN4I GGNNCC 6 cut(s) 229, 263, 341, 350, 780, 804
PspPI GGNCC 8 cut(s) 218, 236, 262, 349, 499, 668, 803, 823
PspPPI RGGWCCY 2 cut(s) 499, 803
PsuI RGATCY 1 cut(s) 354
PvuI CGATCG 2 cut(s) 392, 692
PvuII CAGCTG 1 cut(s) 715
RsaI GTAC 4 cut(s) 5, 406, 1112, 1226
RsaNI GTAC 4 cut(s) 4, 405, 1111, 1225
RseI CAYNNNNRTG 1 cut(s) 1215
Rsr2I CGGWCCG 1 cut(s) 218
RsrII CGGWCCG 1 cut(s) 218
SacII CCGCGG 1 cut(s) 756
SaqAI TTAA 3 cut(s) 459, 912, 1172
Sau3AI GATC 8 cut(s) 354, 389, 520, 689, 718, 921, 976, 1204
Sau96I GGNCC 8 cut(s) 218, 236, 262, 349, 499, 668, 803, 823
SchI GAGTC 1 cut(s) 1067
ScrFI CCNGG 6 cut(s) 222, 235, 266, 277, 506, 1229
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 2 cut(s) 748, 1197
SfcI CTRYAG 1 cut(s) 1180
Sfr303I CCGCGG 1 cut(s) 756
SfuI TTCGAA 2 cut(s) 988, 1090
SgrBI CCGCGG 1 cut(s) 756
SinI GGWCC 6 cut(s) 218, 262, 349, 499, 803, 823
SmiMI CAYNNNNRTG 1 cut(s) 1215
SmlI CTYRAG 2 cut(s) 428, 644
SmoI CTYRAG 2 cut(s) 428, 644
Sse9I AATT 9 cut(s) 182, 532, 565, 700, 860, 888, 909, 1018, 1044
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 6 cut(s) 220, 233, 264, 275, 504, 1227
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 2 cut(s) 839, 856
TaiI ACGT 2 cut(s) 260, 326
TaqI TCGA 5 cut(s) 384, 625, 988, 1090, 1191
TaqII GACCGA 2 cut(s) 402, 702
TasI AATT 9 cut(s) 182, 532, 565, 700, 860, 888, 909, 1018, 1044
TatI WGTACW 1 cut(s) 1110
TauI GCSGC 7 cut(s) 95, 194, 233, 584, 587, 590, 755
TfiI GAWTC 2 cut(s) 614, 650
Tru1I TTAA 3 cut(s) 459, 912, 1172
Tru9I TTAA 3 cut(s) 459, 912, 1172
TscAI CASTG 1 cut(s) 1120
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 6 cut(s) 145, 148, 156, 201, 578, 712
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 1 cut(s) 1199
TspGWI ACGGA 3 cut(s) 80, 422, 828
TspRI CASTG 1 cut(s) 1120
VpaK11BI GGWCC 6 cut(s) 218, 262, 349, 499, 803, 823
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.