Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13450 AT1G13450 AT1G13450 |
| fragaria_vesca | FvH4_6g52740 |
| malus_domestica | MD06G1052100.v1.1 MD17G1017400.v1.1 |
| prunus_persica | Prupe.3G300500_v2.0.a1 |
| pyrus_communis | pycom06g06930 pycom16g09330 pycom17g01400 |
| rosa_chinensis | RchiOBHm_Chr2g0174361 |
| rosa_laevigata | RLG00000022260 |
| rosa_multiflora | Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00078270 |
| rosa_rugosa | Rorug02G0576400 |
| rosa_samantha | Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000 |
| rosa_wichuraiana | Rw2G053840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 851 |
| AccB1I | GGYRCC | 2 cut(s) | 227, 339 |
| AccI | GTMKAC | 1 cut(s) | 306 |
| AccII | CGCG | 3 cut(s) | 24, 364, 755 |
| AclWI | GGATC | 1 cut(s) | 726 |
| AcuI | CTGAAG | 1 cut(s) | 1116 |
| AdeI | CACNNNGTG | 1 cut(s) | 402 |
| AfaI | GTAC | 4 cut(s) | 5, 406, 1112, 1226 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 358, 812 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AgsI | TTSAA | 3 cut(s) | 319, 439, 654 |
| AjiI | CACGTC | 2 cut(s) | 258, 324 |
| AjnI | CCWGG | 3 cut(s) | 264, 504, 1227 |
| AluBI | AGCT | 3 cut(s) | 282, 680, 715 |
| AluI | AGCT | 3 cut(s) | 282, 680, 715 |
| Alw21I | GWGCWC | 1 cut(s) | 472 |
| Alw26I | GTCTC | 3 cut(s) | 62, 248, 266 |
| AlwI | GGATC | 1 cut(s) | 726 |
| AoxI | GGCC | 2 cut(s) | 236, 668 |
| ApeKI | GCWGC | 6 cut(s) | 145, 148, 156, 201, 578, 712 |
| AspLEI | GCGC | 4 cut(s) | 26, 112, 364, 697 |
| AspS9I | GGNCC | 8 cut(s) | 218, 236, 262, 349, 499, 668, 803, 823 |
| AsuC2I | CCSGG | 3 cut(s) | 222, 235, 277 |
| AsuHPI | GGTGA | 4 cut(s) | 109, 110, 743, 914 |
| AsuII | TTCGAA | 2 cut(s) | 988, 1090 |
| AvaII | GGWCC | 6 cut(s) | 218, 262, 349, 499, 803, 823 |
| BanI | GGYRCC | 2 cut(s) | 227, 339 |
| Bbv12I | GWGCWC | 1 cut(s) | 472 |
| BbvI | GCAGC | 6 cut(s) | 157, 160, 168, 213, 565, 724 |
| BccI | CCATC | 3 cut(s) | 76, 887, 1150 |
| BceAI | ACGGC | 3 cut(s) | 11, 575, 742 |
| BciT130I | CCWGG | 3 cut(s) | 266, 506, 1229 |
| BcnI | CCSGG | 3 cut(s) | 222, 235, 277 |
| BcoDI | GTCTC | 3 cut(s) | 62, 248, 266 |
| BfaI | CTAG | 1 cut(s) | 53 |
| BfmI | CTRYAG | 1 cut(s) | 1180 |
| BfoI | RGCGCY | 2 cut(s) | 113, 698 |
| BglII | AGATCT | 1 cut(s) | 354 |
| Bme1390I | CCNGG | 6 cut(s) | 222, 235, 266, 277, 506, 1229 |
| Bme18I | GGWCC | 6 cut(s) | 218, 262, 349, 499, 803, 823 |
| BmgBI | CACGTC | 2 cut(s) | 258, 324 |
| BmgT120I | GGNCC | 8 cut(s) | 218, 236, 262, 349, 499, 668, 803, 823 |
| BmiI | GGNNCC | 6 cut(s) | 229, 263, 341, 350, 780, 804 |
| BmrFI | CCNGG | 6 cut(s) | 222, 235, 266, 277, 506, 1229 |
| BmsI | GCATC | 2 cut(s) | 748, 1197 |
| BoxI | GACNNNNGTC | 1 cut(s) | 260 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 812, 844 |
| BpmI | CTGGAG | 2 cut(s) | 488, 814 |
| Bpu14I | TTCGAA | 2 cut(s) | 988, 1090 |
| BpuEI | CTTGAG | 2 cut(s) | 413, 665 |
| BpuMI | CCSGG | 3 cut(s) | 222, 235, 277 |
| Bsa29I | ATCGAT | 1 cut(s) | 1191 |
| BsaI | GGTCTC | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 4 cut(s) | 753, 785, 1147, 1228 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 787, 817 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 358, 812 |
| Bse1I | ACTGG | 2 cut(s) | 797, 904 |
| Bse3DI | GCAATG | 1 cut(s) | 1227 |
| BseBI | CCWGG | 3 cut(s) | 266, 506, 1229 |
| BseCI | ATCGAT | 1 cut(s) | 1191 |
| BseDI | CCNNGG | 4 cut(s) | 753, 785, 1147, 1228 |
| BseGI | GGATG | 4 cut(s) | 91, 372, 763, 1126 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 358, 812 |
| BseMI | GCAATG | 1 cut(s) | 1227 |
| BseMII | CTCAG | 2 cut(s) | 529, 1107 |
| BseNI | ACTGG | 2 cut(s) | 797, 904 |
| BseRI | GAGGAG | 4 cut(s) | 60, 188, 284, 591 |
| BseXI | GCAGC | 6 cut(s) | 157, 160, 168, 213, 565, 724 |
| Bsh1236I | CGCG | 3 cut(s) | 24, 364, 755 |
| Bsh1285I | CGRYCG | 3 cut(s) | 388, 392, 692 |
| BshFI | GGCC | 2 cut(s) | 238, 670 |
| BshNI | GGYRCC | 2 cut(s) | 227, 339 |
| BshVI | ATCGAT | 1 cut(s) | 1191 |
| BsiEI | CGRYCG | 3 cut(s) | 388, 392, 692 |
| BsiHKAI | GWGCWC | 1 cut(s) | 472 |
| BsiSI | CCGG | 3 cut(s) | 221, 234, 277 |
| BslFI | GGGAC | 2 cut(s) | 362, 910 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 358, 812 |
| BsmAI | GTCTC | 3 cut(s) | 62, 248, 266 |
| BsmBI | CGTCTC | 1 cut(s) | 248 |
| BsmFI | GGGAC | 2 cut(s) | 362, 910 |
| BsnI | GGCC | 2 cut(s) | 238, 670 |
| Bso31I | GGTCTC | 1 cut(s) | 266 |
| Bsp119I | TTCGAA | 2 cut(s) | 988, 1090 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp1407I | TGTACA | 1 cut(s) | 1110 |
| Bsp143I | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| BspANI | GGCC | 2 cut(s) | 238, 670 |
| BspCNI | CTCAG | 2 cut(s) | 528, 1108 |
| BspDI | ATCGAT | 1 cut(s) | 1191 |
| BspFNI | CGCG | 3 cut(s) | 24, 364, 755 |
| BspLI | GGNNCC | 6 cut(s) | 229, 263, 341, 350, 780, 804 |
| BspPI | GGATC | 1 cut(s) | 726 |
| BspT104I | TTCGAA | 2 cut(s) | 988, 1090 |
| BspT107I | GGYRCC | 2 cut(s) | 227, 339 |
| BspTNI | GGTCTC | 1 cut(s) | 266 |
| BsrDI | GCAATG | 1 cut(s) | 1227 |
| BsrGI | TGTACA | 1 cut(s) | 1110 |
| BsrI | ACTGG | 2 cut(s) | 797, 904 |
| BssECI | CCNNGG | 4 cut(s) | 753, 785, 1147, 1228 |
| BssMI | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| BssT1I | CCWWGG | 1 cut(s) | 785 |
| Bst2UI | CCWGG | 3 cut(s) | 266, 506, 1229 |
| Bst4CI | ACNGT | 2 cut(s) | 839, 856 |
| Bst6I | CTCTTC | 1 cut(s) | 835 |
| BstAUI | TGTACA | 1 cut(s) | 1110 |
| BstBI | TTCGAA | 2 cut(s) | 988, 1090 |
| BstC8I | GCNNGC | 5 cut(s) | 448, 472, 741, 954, 1144 |
| BstDEI | CTNAG | 3 cut(s) | 515, 948, 1116 |
| BstDSI | CCRYGG | 1 cut(s) | 753 |
| BstEII | GGTNACC | 1 cut(s) | 731 |
| BstF5I | GGATG | 4 cut(s) | 91, 372, 763, 1126 |
| BstFNI | CGCG | 3 cut(s) | 24, 364, 755 |
| BstH2I | RGCGCY | 2 cut(s) | 113, 698 |
| BstHHI | GCGC | 4 cut(s) | 26, 112, 364, 697 |
| BstKTI | GATC | 8 cut(s) | 357, 392, 523, 692, 721, 924, 979, 1207 |
| BstMAI | GTCTC | 3 cut(s) | 62, 248, 266 |
| BstMBI | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| BstMCI | CGRYCG | 3 cut(s) | 388, 392, 692 |
| BstNI | CCWGG | 3 cut(s) | 266, 506, 1229 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 260 |
| BstPI | GGTNACC | 1 cut(s) | 731 |
| BstSCI | CCNGG | 6 cut(s) | 220, 233, 264, 275, 504, 1227 |
| BstSFI | CTRYAG | 1 cut(s) | 1180 |
| BstUI | CGCG | 3 cut(s) | 24, 364, 755 |
| BstV1I | GCAGC | 6 cut(s) | 157, 160, 168, 213, 565, 724 |
| BstX2I | RGATCY | 1 cut(s) | 354 |
| BstYI | RGATCY | 1 cut(s) | 354 |
| Bsu15I | ATCGAT | 1 cut(s) | 1191 |
| BsuRI | GGCC | 2 cut(s) | 238, 670 |
| BsuTUI | ATCGAT | 1 cut(s) | 1191 |
| BtgI | CCRYGG | 1 cut(s) | 753 |
| BtrI | CACGTC | 2 cut(s) | 258, 324 |
| BtsCI | GGATG | 4 cut(s) | 91, 372, 763, 1126 |
| BtsIMutI | CAGTG | 1 cut(s) | 1113 |
| Cac8I | GCNNGC | 5 cut(s) | 448, 472, 741, 954, 1144 |
| CfoI | GCGC | 4 cut(s) | 26, 112, 364, 697 |
| Cfr13I | GGNCC | 8 cut(s) | 218, 236, 262, 349, 499, 668, 803, 823 |
| Cfr42I | CCGCGG | 1 cut(s) | 756 |
| ClaI | ATCGAT | 1 cut(s) | 1191 |
| CpoI | CGGWCCG | 1 cut(s) | 218 |
| CseI | GACGC | 1 cut(s) | 1194 |
| Csp6I | GTAC | 4 cut(s) | 4, 405, 1111, 1225 |
| CspI | CGGWCCG | 1 cut(s) | 218 |
| CviAII | CATG | 1 cut(s) | 400 |
| CviQI | GTAC | 4 cut(s) | 4, 405, 1111, 1225 |
| DdeI | CTNAG | 3 cut(s) | 515, 948, 1116 |
| DpnI | GATC | 8 cut(s) | 356, 391, 522, 691, 720, 923, 978, 1206 |
| DpnII | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| DraIII | CACNNNGTG | 1 cut(s) | 402 |
| Eam1104I | CTCTTC | 1 cut(s) | 835 |
| EarI | CTCTTC | 1 cut(s) | 835 |
| EciI | GGCGGA | 3 cut(s) | 266, 433, 532 |
| Eco130I | CCWWGG | 1 cut(s) | 785 |
| Eco31I | GGTCTC | 1 cut(s) | 266 |
| Eco47I | GGWCC | 6 cut(s) | 218, 262, 349, 499, 803, 823 |
| Eco57I | CTGAAG | 1 cut(s) | 1116 |
| Eco91I | GGTNACC | 1 cut(s) | 731 |
| EcoO109I | RGGNCCY | 2 cut(s) | 499, 803 |
| EcoO65I | GGTNACC | 1 cut(s) | 731 |
| EcoRII | CCWGG | 3 cut(s) | 264, 504, 1227 |
| EcoT14I | CCWWGG | 1 cut(s) | 785 |
| ErhI | CCWWGG | 1 cut(s) | 785 |
| Esp3I | CGTCTC | 1 cut(s) | 248 |
| FaeI | CATG | 1 cut(s) | 403 |
| FaiI | YATR | 6 cut(s) | 37, 401, 674, 851, 1007, 1085 |
| FaqI | GGGAC | 2 cut(s) | 362, 910 |
| FatI | CATG | 1 cut(s) | 399 |
| FauI | CCCGC | 3 cut(s) | 29, 744, 945 |
| FblI | GTMKAC | 1 cut(s) | 306 |
| FokI | GGATG | 4 cut(s) | 98, 379, 770, 1133 |
| FspBI | CTAG | 1 cut(s) | 53 |
| GlaI | GCGC | 4 cut(s) | 25, 111, 363, 696 |
| GsuI | CTGGAG | 2 cut(s) | 488, 814 |
| HaeII | RGCGCY | 2 cut(s) | 113, 698 |
| HaeIII | GGCC | 2 cut(s) | 238, 670 |
| HapII | CCGG | 3 cut(s) | 221, 234, 277 |
| HgaI | GACGC | 1 cut(s) | 1194 |
| HhaI | GCGC | 4 cut(s) | 26, 112, 364, 697 |
| Hin1II | CATG | 1 cut(s) | 403 |
| Hin6I | GCGC | 4 cut(s) | 24, 110, 362, 695 |
| HinP1I | GCGC | 4 cut(s) | 24, 110, 362, 695 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HinfI | GANTC | 3 cut(s) | 614, 650, 1073 |
| HpaII | CCGG | 3 cut(s) | 221, 234, 277 |
| HphI | GGTGA | 4 cut(s) | 109, 110, 743, 914 |
| Hpy166II | GTNNAC | 5 cut(s) | 31, 307, 405, 1113, 1249 |
| Hpy188I | TCNGA | 4 cut(s) | 518, 634, 938, 1078 |
| Hpy188III | TCNNGA | 6 cut(s) | 439, 644, 722, 806, 995, 1130 |
| Hpy8I | GTNNAC | 5 cut(s) | 31, 307, 405, 1113, 1249 |
| Hpy99I | CGWCG | 1 cut(s) | 728 |
| HpyAV | CCTTC | 4 cut(s) | 436, 837, 873, 1034 |
| HpyCH4III | ACNGT | 2 cut(s) | 839, 856 |
| HpyCH4IV | ACGT | 2 cut(s) | 257, 323 |
| HpyCH4V | TGCA | 3 cut(s) | 767, 1142, 1220 |
| HpyF3I | CTNAG | 3 cut(s) | 515, 948, 1116 |
| HpySE526I | ACGT | 2 cut(s) | 257, 323 |
| Hsp92II | CATG | 1 cut(s) | 403 |
| HspAI | GCGC | 4 cut(s) | 24, 110, 362, 695 |
| KspI | CCGCGG | 1 cut(s) | 756 |
| Kzo9I | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| LmnI | GCTCC | 3 cut(s) | 175, 279, 530 |
| Lsp1109I | GCAGC | 6 cut(s) | 157, 160, 168, 213, 565, 724 |
| LweI | GCATC | 2 cut(s) | 748, 1197 |
| MaeI | CTAG | 1 cut(s) | 53 |
| MaeII | ACGT | 2 cut(s) | 257, 323 |
| MaeIII | GTNAC | 1 cut(s) | 731 |
| MalI | GATC | 8 cut(s) | 356, 391, 522, 691, 720, 923, 978, 1206 |
| MboI | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| MboII | GAAGA | 5 cut(s) | 253, 822, 986, 1109, 1199 |
| MflI | RGATCY | 1 cut(s) | 354 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| MluCI | AATT | 9 cut(s) | 182, 532, 565, 700, 860, 888, 909, 1018, 1044 |
| MlyI | GAGTC | 1 cut(s) | 1067 |
| MmeI | TCCRAC | 3 cut(s) | 357, 561, 945 |
| MseI | TTAA | 3 cut(s) | 459, 912, 1172 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1215 |
| MspA1I | CMGCKG | 3 cut(s) | 159, 715, 755 |
| MspI | CCGG | 3 cut(s) | 221, 234, 277 |
| MspR9I | CCNGG | 6 cut(s) | 222, 235, 266, 277, 506, 1229 |
| MvaI | CCWGG | 3 cut(s) | 266, 506, 1229 |
| MvnI | CGCG | 3 cut(s) | 24, 364, 755 |
| NciI | CCSGG | 3 cut(s) | 222, 235, 277 |
| NdeII | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| NlaIII | CATG | 1 cut(s) | 403 |
| NlaIV | GGNNCC | 6 cut(s) | 229, 263, 341, 350, 780, 804 |
| NmeAIII | GCCGAG | 2 cut(s) | 338, 1172 |
| NmuCI | GTSAC | 1 cut(s) | 731 |
| NspV | TTCGAA | 2 cut(s) | 988, 1090 |
| PfeI | GAWTC | 2 cut(s) | 614, 650 |
| PfoI | TCCNGGA | 2 cut(s) | 264, 504 |
| Ple19I | CGATCG | 2 cut(s) | 392, 692 |
| PleI | GAGTC | 1 cut(s) | 1067 |
| PpsI | GAGTC | 1 cut(s) | 1067 |
| PpuMI | RGGWCCY | 2 cut(s) | 499, 803 |
| PshAI | GACNNNNGTC | 1 cut(s) | 260 |
| PsiI | TTATAA | 1 cut(s) | 851 |
| Psp5II | RGGWCCY | 2 cut(s) | 499, 803 |
| Psp6I | CCWGG | 3 cut(s) | 264, 504, 1227 |
| PspEI | GGTNACC | 1 cut(s) | 731 |
| PspGI | CCWGG | 3 cut(s) | 264, 504, 1227 |
| PspN4I | GGNNCC | 6 cut(s) | 229, 263, 341, 350, 780, 804 |
| PspPI | GGNCC | 8 cut(s) | 218, 236, 262, 349, 499, 668, 803, 823 |
| PspPPI | RGGWCCY | 2 cut(s) | 499, 803 |
| PsuI | RGATCY | 1 cut(s) | 354 |
| PvuI | CGATCG | 2 cut(s) | 392, 692 |
| PvuII | CAGCTG | 1 cut(s) | 715 |
| RsaI | GTAC | 4 cut(s) | 5, 406, 1112, 1226 |
| RsaNI | GTAC | 4 cut(s) | 4, 405, 1111, 1225 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1215 |
| Rsr2I | CGGWCCG | 1 cut(s) | 218 |
| RsrII | CGGWCCG | 1 cut(s) | 218 |
| SacII | CCGCGG | 1 cut(s) | 756 |
| SaqAI | TTAA | 3 cut(s) | 459, 912, 1172 |
| Sau3AI | GATC | 8 cut(s) | 354, 389, 520, 689, 718, 921, 976, 1204 |
| Sau96I | GGNCC | 8 cut(s) | 218, 236, 262, 349, 499, 668, 803, 823 |
| SchI | GAGTC | 1 cut(s) | 1067 |
| ScrFI | CCNGG | 6 cut(s) | 222, 235, 266, 277, 506, 1229 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SfaNI | GCATC | 2 cut(s) | 748, 1197 |
| SfcI | CTRYAG | 1 cut(s) | 1180 |
| Sfr303I | CCGCGG | 1 cut(s) | 756 |
| SfuI | TTCGAA | 2 cut(s) | 988, 1090 |
| SgrBI | CCGCGG | 1 cut(s) | 756 |
| SinI | GGWCC | 6 cut(s) | 218, 262, 349, 499, 803, 823 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1215 |
| SmlI | CTYRAG | 2 cut(s) | 428, 644 |
| SmoI | CTYRAG | 2 cut(s) | 428, 644 |
| Sse9I | AATT | 9 cut(s) | 182, 532, 565, 700, 860, 888, 909, 1018, 1044 |
| SspMI | CTAG | 1 cut(s) | 53 |
| StyD4I | CCNGG | 6 cut(s) | 220, 233, 264, 275, 504, 1227 |
| StyI | CCWWGG | 1 cut(s) | 785 |
| TaaI | ACNGT | 2 cut(s) | 839, 856 |
| TaiI | ACGT | 2 cut(s) | 260, 326 |
| TaqI | TCGA | 5 cut(s) | 384, 625, 988, 1090, 1191 |
| TaqII | GACCGA | 2 cut(s) | 402, 702 |
| TasI | AATT | 9 cut(s) | 182, 532, 565, 700, 860, 888, 909, 1018, 1044 |
| TatI | WGTACW | 1 cut(s) | 1110 |
| TauI | GCSGC | 7 cut(s) | 95, 194, 233, 584, 587, 590, 755 |
| TfiI | GAWTC | 2 cut(s) | 614, 650 |
| Tru1I | TTAA | 3 cut(s) | 459, 912, 1172 |
| Tru9I | TTAA | 3 cut(s) | 459, 912, 1172 |
| TscAI | CASTG | 1 cut(s) | 1120 |
| TseFI | GTSAC | 1 cut(s) | 731 |
| TseI | GCWGC | 6 cut(s) | 145, 148, 156, 201, 578, 712 |
| Tsp45I | GTSAC | 1 cut(s) | 731 |
| TspDTI | ATGAA | 1 cut(s) | 1199 |
| TspGWI | ACGGA | 3 cut(s) | 80, 422, 828 |
| TspRI | CASTG | 1 cut(s) | 1120 |
| VpaK11BI | GGWCC | 6 cut(s) | 218, 262, 349, 499, 803, 823 |
| XmiI | GTMKAC | 1 cut(s) | 306 |
| XspI | CTAG | 1 cut(s) | 53 |