MD06G1117400.v1.1

HpcH/HpaI aldolase/citrate lyase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
25639899 .. 25641422
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1117400.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGCCACACTGACTTACTCCGCCGCCGCCGTCAGAACAACCAAACCTACTACCCCACCGGCCCTCAGGAAACCCATCGCCGTCATCCCTATCAAACCCAATTCCATCTCCCCAATCAAAACCCTAAACCGCACCACCAAACCCACCACCTTCTCAATCAAATCCACCGCCTCCTCCGACCACTCCTCCACCGCCACAACCACAATCACCACCACCACCACCACCTCCATCTCCCCCTCCCCACTAACCCTCAAGTCCCGCCTCCAAAATGGCGAGACCCTATACGGCCTCTTCCTCCTCTCCTTCTGCCCCACCCTCGCCGAGATCGCTGGCCTCTCCGGCTACGACTTCGTCGTCGTCGACATGGAGCACGGCCACGGTGGCATACCCGAAGCCCTCTCCTGCCTCCACGCCCTGGCCTCCACCCAAACCCCCGCCATTCTTCGCTTGCCCGAGACCTCCGCAACTTGGGCCAAGAAAGCCCTAGATCTGGGCCCACAAGGCATCATGTTCCCCATGATCGAATCCTCCCAGGCCGCCAAGAAGGCCGTCTCCTACTGCCGCTTCCCTCCCGCCGGCGTCCGCGGATCCGCCCATACCGTAGTTCGCGCCTCCAGCTACGGCATCGACGAGGGGTATTTGAGTAATTACGAGAACCAGCTGCTGATCATGTGCCAGGTGGAGAGCGAGGAGGGCGTGAAGCACGCGGAGGACATCGCGACCGTTGACGGGGTCGACTGTATTCAGATGGGGCCGTTGGATCTGAGCGCCAGCATGGGGTACCTGTGGGACCCGGCGAGCAAGAAGGTGAGGAAAATGATGGAGGCAGCCGAGAAGGCCGCGCTGGGATCCAACCCGAAAGAGGGTGGGGCCTACCTGGCTGGGTTCGCTATGCCCCACGATGGGCCTCGCGATTTGGGGACACGTGGATACCACATGGTGTCGGGAGCCGTTGATGTTGGGTTGTTTAGGGGCGCGGCGGTGGAGGACGTGAAGAGGTTCAAGATGAGCTTGATGGACGGTTTGGATGATGAGCAGGAGGATGAGAAGGATGCTGATGAGAAGTACTGGAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

38.42

Weight (kDa)

5.68

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HpcH_HpaI PF03328 95 - 324 7.1e-49 HpcH/HpaI aldolase/citrate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
Acc65I GGTACC 1 cut(s) 780
AccB1I GGYRCC 1 cut(s) 780
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 2 cut(s) 360, 735
AccII CGCG 7 cut(s) 585, 609, 707, 719, 842, 912, 977
AclWI GGATC 5 cut(s) 582, 595, 768, 843, 856
AcoI YGGCCR 2 cut(s) 3, 373
AcvI CACGTG 1 cut(s) 926
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 2 cut(s) 782, 1067
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 1 cut(s) 1003
AjiI CACGTC 1 cut(s) 991
AjnI CCWGG 4 cut(s) 414, 531, 675, 876
AluBI AGCT 3 cut(s) 618, 661, 1011
AluI AGCT 3 cut(s) 618, 661, 1011
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 3 cut(s) 269, 449, 556
AlwI GGATC 5 cut(s) 582, 595, 768, 843, 856
AlwNI CAGNNNCTG 1 cut(s) 664
Ama87I CYCGRG 1 cut(s) 452
ApaI GGGCCC 1 cut(s) 497
ApeKI GCWGC 2 cut(s) 661, 827
Asp700I GAANNNNTTC 1 cut(s) 998
Asp718I GGTACC 1 cut(s) 780
AspLEI GCGC 4 cut(s) 611, 770, 844, 977
AspS9I GGNCC 8 cut(s) 61, 471, 493, 494, 752, 790, 870, 905
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 2 cut(s) 199, 820
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 790
AxyI CCTNAGG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 587, 848
BanI GGYRCC 1 cut(s) 780
BanII GRGCYC 1 cut(s) 497
BbrPI CACGTG 1 cut(s) 926
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 648, 839
BccI CCATC 7 cut(s) 83, 113, 236, 742, 814, 896, 1009
BceAI ACGGC 8 cut(s) 14, 65, 301, 388, 533, 637, 739, 935
BciT130I CCWGG 4 cut(s) 416, 533, 677, 878
BciVI GTATCC 1 cut(s) 923
BclI TGATCA 1 cut(s) 666
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 3 cut(s) 269, 449, 556
BfaI CTAG 1 cut(s) 485
BfoI RGCGCY 1 cut(s) 771
BfuI GTATCC 1 cut(s) 923
BglI GCCNNNNNGGC 6 cut(s) 339, 381, 501, 545, 836, 878
BglII AGATCT 1 cut(s) 487
BisI GCNGC 8 cut(s) 24, 27, 537, 562, 662, 828, 840, 978
BlsI GCNGC 8 cut(s) 25, 28, 538, 563, 663, 829, 841, 979
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 5 cut(s) 416, 533, 677, 794, 878
Bme18I GGWCC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 991
BmgT120I GGNCC 8 cut(s) 61, 471, 493, 494, 752, 790, 870, 905
BmiI GGNNCC 9 cut(s) 495, 589, 753, 782, 791, 792, 850, 871, 949
BmrFI CCNGG 5 cut(s) 416, 533, 677, 794, 878
BmsI GCATC 3 cut(s) 513, 633, 1042
BpmI CTGGAG 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 794
BsaAI YACGTR 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 579
BsaI GGTCTC 2 cut(s) 269, 449
BsaJI CCNNGG 4 cut(s) 376, 414, 531, 583
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse118I RCCGGY 2 cut(s) 58, 575
Bse1I ACTGG 1 cut(s) 1073
Bse21I CCTNAGG 1 cut(s) 65
BseBI CCWGG 4 cut(s) 416, 533, 677, 878
BseDI CCNNGG 4 cut(s) 376, 414, 531, 583
BseGI GGATG 4 cut(s) 84, 1033, 1048, 1057
BseMII CTCAG 2 cut(s) 79, 755
BseNI ACTGG 1 cut(s) 1073
BseRI GAGGAG 4 cut(s) 163, 175, 287, 704
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 2 cut(s) 648, 839
BseYI CCCAGC 2 cut(s) 844, 881
Bsh1236I CGCG 7 cut(s) 585, 609, 707, 719, 842, 912, 977
Bsh1285I CGRYCG 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 780
BsiEI CGRYCG 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 4 cut(s) 59, 339, 576, 794
BslFI GGGAC 3 cut(s) 241, 803, 934
BsmAI GTCTC 3 cut(s) 269, 449, 556
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 3 cut(s) 241, 803, 934
Bso31I GGTCTC 2 cut(s) 269, 449
BsoBI CYCGRG 1 cut(s) 452
Bsp120I GGGCCC 1 cut(s) 493
Bsp1286I GDGCHC 2 cut(s) 372, 497
Bsp143I GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
Bsp68I TCGCGA 2 cut(s) 719, 912
BspCNI CTCAG 2 cut(s) 78, 756
BspFNI CGCG 7 cut(s) 585, 609, 707, 719, 842, 912, 977
BspLI GGNNCC 9 cut(s) 495, 589, 753, 782, 791, 792, 850, 871, 949
BspPI GGATC 5 cut(s) 582, 595, 768, 843, 856
BspT107I GGYRCC 1 cut(s) 780
BspTNI GGTCTC 2 cut(s) 269, 449
BsrFI RCCGGY 2 cut(s) 58, 575
BsrI ACTGG 1 cut(s) 1073
BssAI RCCGGY 2 cut(s) 58, 575
BssECI CCNNGG 4 cut(s) 376, 414, 531, 583
BssMI GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
BssNI GRCGYC 1 cut(s) 579
Bst2UI CCWGG 4 cut(s) 416, 533, 677, 878
Bst4CI ACNGT 5 cut(s) 380, 601, 724, 740, 1022
Bst6I CTCTTC 2 cut(s) 296, 989
BstACI GRCGYC 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 6 cut(s) 331, 449, 577, 705, 772, 799
BstDEI CTNAG 2 cut(s) 65, 764
BstDSI CCRYGG 2 cut(s) 376, 583
BstF5I GGATG 4 cut(s) 84, 1033, 1048, 1057
BstFNI CGCG 7 cut(s) 585, 609, 707, 719, 842, 912, 977
BstH2I RGCGCY 1 cut(s) 771
BstHHI GCGC 4 cut(s) 611, 770, 844, 977
BstKTI GATC 7 cut(s) 327, 490, 522, 590, 669, 763, 851
BstMAI GTCTC 3 cut(s) 269, 449, 556
BstMBI GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
BstMCI CGRYCG 1 cut(s) 723
BstNI CCWGG 4 cut(s) 416, 533, 677, 878
BstSCI CCNGG 5 cut(s) 414, 531, 675, 792, 876
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 7 cut(s) 585, 609, 707, 719, 842, 912, 977
BstV1I GCAGC 2 cut(s) 648, 839
BstX2I RGATCY 4 cut(s) 487, 587, 760, 848
BstYI RGATCY 4 cut(s) 487, 587, 760, 848
Bsu36I CCTNAGG 1 cut(s) 65
BsuI GTATCC 1 cut(s) 923
BtgI CCRYGG 2 cut(s) 376, 583
BtgZI GCGATG 2 cut(s) 61, 700
BtrI CACGTC 1 cut(s) 991
BtsCI GGATG 4 cut(s) 84, 1033, 1048, 1057
BtsIMutI CAGTG 1 cut(s) 8
BtuMI TCGCGA 2 cut(s) 719, 912
Cac8I GCNNGC 6 cut(s) 331, 449, 577, 705, 772, 799
CaiI CAGNNNCTG 1 cut(s) 664
CfoI GCGC 4 cut(s) 611, 770, 844, 977
Cfr10I RCCGGY 2 cut(s) 58, 575
Cfr13I GGNCC 8 cut(s) 61, 471, 493, 494, 752, 790, 870, 905
Cfr42I CCGCGG 1 cut(s) 586
CseI GACGC 1 cut(s) 568
Csp6I GTAC 2 cut(s) 781, 1066
CviAII CATG 6 cut(s) 364, 508, 517, 670, 775, 937
CviQI GTAC 2 cut(s) 781, 1066
DdeI CTNAG 2 cut(s) 65, 764
DpnI GATC 7 cut(s) 326, 489, 521, 589, 668, 762, 850
DpnII GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
DraIII CACNNNGTG 1 cut(s) 940
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 2 cut(s) 3, 373
Eam1104I CTCTTC 2 cut(s) 296, 989
EarI CTCTTC 2 cut(s) 296, 989
EciI GGCGGA 2 cut(s) 10, 580
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 2 cut(s) 269, 449
Eco47I GGWCC 1 cut(s) 790
Eco72I CACGTG 1 cut(s) 926
Eco81I CCTNAGG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 790, 870
EcoRII CCWGG 4 cut(s) 414, 531, 675, 876
EcoT38I GRGCYC 1 cut(s) 497
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 6 cut(s) 367, 511, 520, 673, 778, 940
FalI AAGNNNNNCTT 2 cut(s) 995, 1027
FaqI GGGAC 3 cut(s) 241, 803, 934
FatI CATG 6 cut(s) 363, 507, 516, 669, 774, 936
FauI CCCGC 3 cut(s) 266, 442, 580
FbaI TGATCA 1 cut(s) 666
FblI GTMKAC 2 cut(s) 360, 735
Fnu4HI GCNGC 8 cut(s) 24, 27, 537, 562, 662, 828, 840, 978
FokI GGATG 4 cut(s) 71, 1040, 1055, 1064
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 8 cut(s) 24, 27, 537, 562, 662, 828, 840, 978
FspBI CTAG 1 cut(s) 485
GlaI GCGC 4 cut(s) 610, 769, 843, 976
GluI GCNGC 8 cut(s) 24, 27, 537, 562, 662, 828, 840, 978
GsaI CCCAGC 2 cut(s) 848, 885
GsuI CTGGAG 1 cut(s) 598
HaeII RGCGCY 1 cut(s) 771
HapII CCGG 4 cut(s) 59, 339, 576, 794
HgaI GACGC 1 cut(s) 568
HhaI GCGC 4 cut(s) 611, 770, 844, 977
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 6 cut(s) 367, 511, 520, 673, 778, 940
Hin6I GCGC 4 cut(s) 609, 768, 842, 975
HinP1I GCGC 4 cut(s) 609, 768, 842, 975
HincII GTYRAC 3 cut(s) 361, 727, 736
HindII GTYRAC 3 cut(s) 361, 727, 736
HinfI GANTC 1 cut(s) 524
HpaII CCGG 4 cut(s) 59, 339, 576, 794
HphI GGTGA 2 cut(s) 199, 820
Hpy166II GTNNAC 3 cut(s) 361, 727, 736
Hpy188I TCNGA 4 cut(s) 35, 178, 747, 765
Hpy188III TCNNGA 5 cut(s) 67, 718, 911, 945, 1003
Hpy8I GTNNAC 3 cut(s) 361, 727, 736
Hpy99I CGWCG 4 cut(s) 356, 359, 362, 632
HpyAV CCTTC 6 cut(s) 160, 313, 538, 799, 829, 1042
HpyCH4III ACNGT 5 cut(s) 380, 601, 724, 740, 1022
HpyCH4IV ACGT 2 cut(s) 925, 990
HpyF3I CTNAG 2 cut(s) 65, 764
HpySE526I ACGT 2 cut(s) 925, 990
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 6 cut(s) 367, 511, 520, 673, 778, 940
HspAI GCGC 4 cut(s) 609, 768, 842, 975
KflI GGGWCCC 1 cut(s) 790
KpnI GGTACC 1 cut(s) 784
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 666
KspI CCGCGG 1 cut(s) 586
Kzo9I GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
LmnI GCTCC 3 cut(s) 367, 947, 1071
Lsp1109I GCAGC 2 cut(s) 648, 839
LweI GCATC 3 cut(s) 513, 633, 1042
MaeI CTAG 1 cut(s) 485
MaeII ACGT 2 cut(s) 925, 990
MalI GATC 7 cut(s) 326, 489, 521, 589, 668, 762, 850
MboI GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
MboII GAAGA 3 cut(s) 283, 434, 1006
MflI RGATCY 4 cut(s) 487, 587, 760, 848
MhlI GDGCHC 2 cut(s) 372, 497
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 100, 646
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 201, 738, 876
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 575
MroNI GCCGGC 1 cut(s) 575
MroXI GAANNNNTTC 1 cut(s) 998
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 585, 661
MspI CCGG 4 cut(s) 59, 339, 576, 794
MspR9I CCNGG 5 cut(s) 416, 533, 677, 794, 878
MvaI CCWGG 4 cut(s) 416, 533, 677, 878
MvnI CGCG 7 cut(s) 585, 609, 707, 719, 842, 912, 977
NaeI GCCGGC 1 cut(s) 577
NciI CCSGG 1 cut(s) 794
NdeII GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 6 cut(s) 367, 511, 520, 673, 778, 940
NlaIV GGNNCC 9 cut(s) 495, 589, 753, 782, 791, 792, 850, 871, 949
NmeAIII GCCGAG 2 cut(s) 346, 856
NruI TCGCGA 2 cut(s) 719, 912
PcsI WCGNNNNNNNCGW 3 cut(s) 351, 357, 627
PdiI GCCGGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 998
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 2 cut(s) 350, 731
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 8 cut(s) 25, 28, 538, 563, 663, 829, 841, 979
PmaCI CACGTG 1 cut(s) 926
PmlI CACGTG 1 cut(s) 926
Ppu21I YACGTR 1 cut(s) 926
PpuMI RGGWCCY 1 cut(s) 790
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 4 cut(s) 414, 531, 675, 876
PspCI CACGTG 1 cut(s) 926
PspFI CCCAGC 2 cut(s) 844, 881
PspGI CCWGG 4 cut(s) 414, 531, 675, 876
PspN4I GGNNCC 9 cut(s) 495, 589, 753, 782, 791, 792, 850, 871, 949
PspOMI GGGCCC 1 cut(s) 493
PspPI GGNCC 8 cut(s) 61, 471, 493, 494, 752, 790, 870, 905
PspPPI RGGWCCY 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 664
PsuI RGATCY 4 cut(s) 487, 587, 760, 848
PsyI GACNNNGTC 2 cut(s) 350, 731
PvuII CAGCTG 1 cut(s) 661
RruI TCGCGA 2 cut(s) 719, 912
RsaI GTAC 2 cut(s) 782, 1067
RsaNI GTAC 2 cut(s) 781, 1066
SacII CCGCGG 1 cut(s) 586
SalI GTCGAC 2 cut(s) 359, 734
SatI GCNGC 8 cut(s) 24, 27, 537, 562, 662, 828, 840, 978
Sau3AI GATC 7 cut(s) 324, 487, 519, 587, 666, 760, 848
Sau96I GGNCC 8 cut(s) 61, 471, 493, 494, 752, 790, 870, 905
ScaI AGTACT 1 cut(s) 1067
ScrFI CCNGG 5 cut(s) 416, 533, 677, 794, 878
SduI GDGCHC 2 cut(s) 372, 497
SfaNI GCATC 3 cut(s) 513, 633, 1042
Sfr303I CCGCGG 1 cut(s) 586
SgrAI CRCCGGYG 1 cut(s) 575
SgrBI CCGCGG 1 cut(s) 586
SinI GGWCC 1 cut(s) 790
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 100, 646
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 5 cut(s) 414, 531, 675, 792, 876
TaaI ACNGT 5 cut(s) 380, 601, 724, 740, 1022
TaiI ACGT 2 cut(s) 928, 993
TaqI TCGA 4 cut(s) 360, 522, 627, 735
TasI AATT 2 cut(s) 100, 646
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 6 cut(s) 26, 29, 539, 564, 842, 980
TfiI GAWTC 1 cut(s) 524
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 661, 827
TspRI CASTG 1 cut(s) 15
Tth111I GACNNNGTC 2 cut(s) 350, 731
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 790
XmiI GTMKAC 2 cut(s) 360, 735
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.