Rmu_ssc0000024.1_g000045

HpcH/HpaI aldolase/citrate lyase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000024.1
OG0012383
Physical Location & Seq
Forward (+)
196823 .. 197875
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000024.1_g000045.1.cds

Sequence Viewer

Length: 1053 bp
atggccacactgactcacgccgccgccatcaccgcctcatcaccgctcgcaaaacccatctcttccagtcccaccaccaccaatcccctatcccatctctctttccctttctccccatccaaaaccctaaacctcaccgccaaaaccacctcaatcaaatcctcctcctcctccgatctctccaccaccaccgtaacgaccacctccatctcctcctccccgcaaaccctcaagtcccgcctccacaatggcgacaccctctacggcctcttcctcctcagcttctcccccaccctcgccgagatcgccggcctctccggctacgacttcgtcgtcgtcgacatggagcacggccccggcggaatctccgaagccctctcctgcctccgcgccctcgccgccacccaaaccccggcgatcctccggctgccggaatcctccccgacctgggccaagaaagccctcgatctcggcccgcaggggatcatgttcccgatgatcgacagctccaaggaggccgagaaagccgtctcctactgccgcttccctcccgccggcatccgcggctccgcacacaccgtcgtccgagcctccagctacggcatcgacgaggggtatttgagtaattacgaggaccaattgctgatcatgtgccaggtggagaccgaggagggcgtgaagagagcggaggagatcgcggccgtcgaaggcgttgactgcgtgcagatggggccgttggatctgagcgccagcctggggtacctgtgggacccggggaacaagaaggtccggaacgcgttgaaggttgccgagaaggccgtactgggcaccgacccccttgtgggtggggcctacttggctgggttcgctatgccccacgatgggccccaggacctgaggacacgtggctaccacatggtgtccggttccgtcgacgtcgggctgtttaggagcgcagcggtggaggacgtgaggaggtttcaggcgagcttgatcaacggctctgatgaggagcgtggggatgatgcagatgagaagtactggagcgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HpcH_HpaI

Protein Analysis

350

Amino Acids

37.16

Weight (kDa)

5.16

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10750
fragaria_vesca FvH4_5g11021 FvH4_5g11021
malus_domestica MD06G1117400.v1.1
prunus_persica Prupe.5G128500_v2.0.a1
pyrus_communis pycom06g10930
rosa_chinensis RchiOBHm_Chr7g0186781
rosa_laevigata RLG00000004816
rosa_multiflora Rmu_co8215596.1_g000001 Rmu_sc0009734.1_g000001 Rmu_sc0040245.1_g000001 Rmu_ssc0000024.1_g000045
rosa_roxburghii Rroxscaffold_3G00267830
rosa_rugosa Rorug06G0476600
rosa_samantha Rh7AG063900 Rh7BG080400 Rh7CG083600 Rh7DG084500
rosa_wichuraiana Rw7G007250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AatII GACGTC 1 cut(s) 939
Acc65I GGTACC 1 cut(s) 759
AccB1I GGYRCC 2 cut(s) 759, 827
AccBSI CCGCTC 2 cut(s) 46, 686
AccI GTMKAC 2 cut(s) 339, 933
AccII CGCG 4 cut(s) 390, 564, 698, 797
AccIII TCCGGA 1 cut(s) 789
AclWI GGATC 3 cut(s) 412, 491, 747
AcoI YGGCCR 2 cut(s) 3, 699
AcvI CACGTG 1 cut(s) 905
AcyI GRCGYC 1 cut(s) 936
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 3 cut(s) 761, 822, 1040
AflIII ACRYGT 2 cut(s) 795, 902
AgsI TTSAA 1 cut(s) 802
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 4 cut(s) 446, 654, 753, 888
AluBI AGCT 4 cut(s) 282, 507, 597, 990
AluI AGCT 4 cut(s) 282, 507, 597, 990
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 535, 656
AlwI GGATC 3 cut(s) 412, 491, 747
AlwNI CAGNNNCTG 1 cut(s) 895
Ama87I CYCGRG 1 cut(s) 772
Aor13HI TCCGGA 1 cut(s) 789
ApaI GGGCCC 1 cut(s) 888
ApeKI GCWGC 2 cut(s) 427, 956
Asp718I GGTACC 1 cut(s) 759
AspLEI GCGC 3 cut(s) 392, 749, 956
AsuC2I CCSGG 4 cut(s) 357, 413, 773, 774
AsuHPI GGTGA 3 cut(s) 22, 33, 127
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 4 cut(s) 634, 769, 787, 892
AxyI CCTNAGG 1 cut(s) 896
BaeGI GKGCMC 2 cut(s) 830, 888
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 759, 827
BanII GRGCYC 1 cut(s) 888
BbrPI CACGTG 1 cut(s) 905
Bbv12I GWGCWC 1 cut(s) 351
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 414, 968
BccI CCATC 7 cut(s) 35, 65, 102, 124, 215, 721, 875
BceAI ACGGC 8 cut(s) 280, 367, 512, 616, 686, 718, 803, 1015
BciT130I CCWGG 4 cut(s) 448, 656, 755, 890
BclI TGATCA 2 cut(s) 645, 993
BcnI CCSGG 4 cut(s) 357, 413, 773, 774
BcoDI GTCTC 2 cut(s) 535, 656
BfoI RGCGCY 1 cut(s) 750
BglI GCCNNNNNGGC 3 cut(s) 318, 815, 857
BisI GCNGC 8 cut(s) 21, 24, 399, 428, 541, 565, 699, 957
BlsI GCNGC 8 cut(s) 22, 25, 400, 429, 542, 566, 700, 958
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 8 cut(s) 357, 413, 448, 656, 755, 773, 774, 890
Bme18I GGWCC 4 cut(s) 634, 769, 787, 892
BmeT110I CYCGRG 1 cut(s) 772
BmgBI CACGTC 1 cut(s) 970
BmrFI CCNGG 8 cut(s) 357, 413, 448, 656, 755, 773, 774, 890
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 3 cut(s) 567, 612, 1015
BmuI ACTGGG 1 cut(s) 833
BpmI CTGGAG 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 4 cut(s) 357, 413, 773, 774
BsaAI YACGTR 1 cut(s) 905
BsaHI GRCGYC 1 cut(s) 936
BsaI GGTCTC 1 cut(s) 656
BsaWI WCCGGW 2 cut(s) 789, 923
Bse118I RCCGGY 2 cut(s) 308, 554
Bse1I ACTGG 3 cut(s) 66, 828, 1046
Bse21I CCTNAGG 1 cut(s) 896
BseAI TCCGGA 1 cut(s) 789
BseBI CCWGG 4 cut(s) 448, 656, 755, 890
BseGI GGATG 3 cut(s) 116, 558, 1027
BseMII CTCAG 3 cut(s) 292, 734, 887
BseNI ACTGG 3 cut(s) 66, 828, 1046
BseSI GKGCMC 2 cut(s) 830, 888
BseX3I CGGCCG 1 cut(s) 699
BseXI GCAGC 2 cut(s) 414, 968
BseYI CCCAGC 1 cut(s) 860
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 4 cut(s) 390, 564, 698, 797
Bsh1285I CGRYCG 1 cut(s) 702
BshNI GGYRCC 2 cut(s) 759, 827
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 772
BslFI GGGAC 3 cut(s) 54, 220, 782
BsmAI GTCTC 2 cut(s) 535, 656
BsmBI CGTCTC 1 cut(s) 535
BsmFI GGGAC 3 cut(s) 54, 220, 782
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 772
Bsp120I GGGCCC 1 cut(s) 884
Bsp1286I GDGCHC 3 cut(s) 351, 830, 888
Bsp13I TCCGGA 1 cut(s) 789
BspCNI CTCAG 3 cut(s) 291, 735, 888
BspEI TCCGGA 1 cut(s) 789
BspFNI CGCG 4 cut(s) 390, 564, 698, 797
BspPI GGATC 3 cut(s) 412, 491, 747
BspT107I GGYRCC 2 cut(s) 759, 827
BspTNI GGTCTC 1 cut(s) 656
BsrBI CCGCTC 2 cut(s) 46, 686
BsrFI RCCGGY 2 cut(s) 308, 554
BsrI ACTGG 3 cut(s) 66, 828, 1046
BssAI RCCGGY 2 cut(s) 308, 554
BssNI GRCGYC 1 cut(s) 936
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 4 cut(s) 448, 656, 755, 890
Bst4CI ACNGT 2 cut(s) 193, 580
Bst6I CTCTTC 3 cut(s) 67, 275, 674
BstACI GRCGYC 1 cut(s) 936
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 7 cut(s) 48, 310, 476, 556, 722, 751, 988
BstDEI CTNAG 3 cut(s) 278, 743, 896
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 3 cut(s) 116, 558, 1027
BstFNI CGCG 4 cut(s) 390, 564, 698, 797
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 3 cut(s) 392, 749, 956
BstMAI GTCTC 2 cut(s) 535, 656
BstMCI CGRYCG 1 cut(s) 702
BstNI CCWGG 4 cut(s) 448, 656, 755, 890
BstSCI CCNGG 8 cut(s) 355, 411, 446, 654, 753, 771, 772, 888
BstSLI GKGCMC 2 cut(s) 830, 888
BstUI CGCG 4 cut(s) 390, 564, 698, 797
BstV1I GCAGC 2 cut(s) 414, 968
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BstZI CGGCCG 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 562
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 3 cut(s) 116, 558, 1027
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 7 cut(s) 48, 310, 476, 556, 722, 751, 988
CaiI CAGNNNCTG 1 cut(s) 895
CfoI GCGC 3 cut(s) 392, 749, 956
Cfr10I RCCGGY 2 cut(s) 308, 554
Cfr42I CCGCGG 1 cut(s) 565
Cfr9I CCCGGG 1 cut(s) 772
Csp6I GTAC 3 cut(s) 760, 821, 1039
CviAII CATG 4 cut(s) 343, 487, 649, 916
CviQI GTAC 3 cut(s) 760, 821, 1039
DdeI CTNAG 3 cut(s) 278, 743, 896
DraIII CACNNNGTG 1 cut(s) 919
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 3, 699
EagI CGGCCG 1 cut(s) 699
Eam1104I CTCTTC 3 cut(s) 67, 275, 674
EarI CTCTTC 3 cut(s) 67, 275, 674
EciI GGCGGA 1 cut(s) 375
EclXI CGGCCG 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 4 cut(s) 634, 769, 787, 892
Eco52I CGGCCG 1 cut(s) 699
Eco72I CACGTG 1 cut(s) 905
Eco81I CCTNAGG 1 cut(s) 896
Eco88I CYCGRG 1 cut(s) 772
EcoO109I RGGNCCY 4 cut(s) 769, 849, 885, 892
EcoRII CCWGG 4 cut(s) 446, 654, 753, 888
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 510
Esp3I CGTCTC 1 cut(s) 535
FaeI CATG 4 cut(s) 346, 490, 652, 919
FaiI YATR 5 cut(s) 344, 488, 650, 872, 917
FaqI GGGAC 3 cut(s) 54, 220, 782
FatI CATG 4 cut(s) 342, 486, 648, 915
FauI CCCGC 4 cut(s) 228, 245, 483, 559
FbaI TGATCA 2 cut(s) 645, 993
FblI GTMKAC 2 cut(s) 339, 933
Fnu4HI GCNGC 8 cut(s) 21, 24, 399, 428, 541, 565, 699, 957
FokI GGATG 3 cut(s) 103, 545, 1034
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 8 cut(s) 21, 24, 399, 428, 541, 565, 699, 957
GlaI GCGC 3 cut(s) 391, 748, 955
GluI GCNGC 8 cut(s) 21, 24, 399, 428, 541, 565, 699, 957
GsaI CCCAGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 577
HaeII RGCGCY 1 cut(s) 750
HhaI GCGC 3 cut(s) 392, 749, 956
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 4 cut(s) 346, 490, 652, 919
Hin6I GCGC 3 cut(s) 390, 747, 954
HinP1I GCGC 3 cut(s) 390, 747, 954
HincII GTYRAC 3 cut(s) 340, 715, 934
HindII GTYRAC 3 cut(s) 340, 715, 934
HinfI GANTC 3 cut(s) 13, 363, 434
HphI GGTGA 3 cut(s) 22, 33, 127
Hpy166II GTNNAC 3 cut(s) 340, 715, 934
Hpy188I TCNGA 5 cut(s) 175, 370, 587, 744, 1006
Hpy188III TCNNGA 2 cut(s) 493, 790
Hpy8I GTNNAC 3 cut(s) 340, 715, 934
Hpy99I CGWCG 9 cut(s) 335, 338, 341, 584, 611, 707, 935, 938, 941
HpyAV CCTTC 4 cut(s) 701, 778, 796, 808
HpyCH4III ACNGT 2 cut(s) 193, 580
HpyCH4IV ACGT 3 cut(s) 904, 936, 969
HpyCH4V TGCA 2 cut(s) 724, 1028
HpyF3I CTNAG 3 cut(s) 278, 743, 896
HpySE526I ACGT 3 cut(s) 904, 936, 969
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 4 cut(s) 346, 490, 652, 919
HspAI GCGC 3 cut(s) 390, 747, 954
KflI GGGWCCC 1 cut(s) 769
Kpn2I TCCGGA 1 cut(s) 789
KpnI GGTACC 1 cut(s) 763
KroI GCCGGC 2 cut(s) 308, 554
KroNI GCCGGC 2 cut(s) 310, 556
Ksp22I TGATCA 2 cut(s) 645, 993
KspI CCGCGG 1 cut(s) 565
LmnI GCTCC 6 cut(s) 346, 512, 572, 951, 1012, 1044
Lsp1109I GCAGC 2 cut(s) 414, 968
LweI GCATC 3 cut(s) 567, 612, 1015
MaeII ACGT 3 cut(s) 904, 936, 969
MaeIII GTNAC 1 cut(s) 193
MbiI CCGCTC 2 cut(s) 46, 686
MboII GAAGA 3 cut(s) 54, 262, 691
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 3 cut(s) 351, 830, 888
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 625, 638
MluI ACGCGT 1 cut(s) 795
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 717
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 789
MroNI GCCGGC 2 cut(s) 308, 554
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 564, 959
MspR9I CCNGG 8 cut(s) 357, 413, 448, 656, 755, 773, 774, 890
MunI CAATTG 1 cut(s) 638
MvaI CCWGG 4 cut(s) 448, 656, 755, 890
MvnI CGCG 4 cut(s) 390, 564, 698, 797
NaeI GCCGGC 2 cut(s) 310, 556
NciI CCSGG 4 cut(s) 357, 413, 773, 774
NgoMIV GCCGGC 2 cut(s) 308, 554
NlaIII CATG 4 cut(s) 346, 490, 652, 919
NmeAIII GCCGAG 4 cut(s) 325, 450, 544, 835
PcsI WCGNNNNNNNCGW 4 cut(s) 330, 336, 606, 702
PdiI GCCGGC 2 cut(s) 310, 556
PfeI GAWTC 2 cut(s) 363, 434
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 8 cut(s) 22, 25, 400, 429, 542, 566, 700, 958
PleI GAGTC 1 cut(s) 7
PmaCI CACGTG 1 cut(s) 905
PmlI CACGTG 1 cut(s) 905
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 905
PpuMI RGGWCCY 2 cut(s) 769, 892
Psp5II RGGWCCY 2 cut(s) 769, 892
Psp6I CCWGG 4 cut(s) 446, 654, 753, 888
PspCI CACGTG 1 cut(s) 905
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 4 cut(s) 446, 654, 753, 888
PspOMI GGGCCC 1 cut(s) 884
PspPPI RGGWCCY 2 cut(s) 769, 892
PstNI CAGNNNCTG 1 cut(s) 895
PsuI RGATCY 1 cut(s) 739
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 3 cut(s) 761, 822, 1040
RsaNI GTAC 3 cut(s) 760, 821, 1039
SacII CCGCGG 1 cut(s) 565
SalI GTCGAC 2 cut(s) 338, 932
SatI GCNGC 8 cut(s) 21, 24, 399, 428, 541, 565, 699, 957
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 8 cut(s) 357, 413, 448, 656, 755, 773, 774, 890
SduI GDGCHC 3 cut(s) 351, 830, 888
SfaNI GCATC 3 cut(s) 567, 612, 1015
Sfr303I CCGCGG 1 cut(s) 565
SgrBI CCGCGG 1 cut(s) 565
SgrDI CGTCGACG 1 cut(s) 932
SinI GGWCC 4 cut(s) 634, 769, 787, 892
SmaI CCCGGG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 625, 638
StyD4I CCNGG 8 cut(s) 355, 411, 446, 654, 753, 771, 772, 888
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 2 cut(s) 193, 580
TaiI ACGT 3 cut(s) 907, 939, 972
TaqI TCGA 6 cut(s) 339, 465, 501, 606, 705, 933
TaqII GACCGA 1 cut(s) 680
TasI AATT 2 cut(s) 625, 638
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 6 cut(s) 23, 26, 401, 543, 567, 701
TfiI GAWTC 2 cut(s) 363, 434
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 427, 956
TspGWI ACGGA 1 cut(s) 919
TspMI CCCGGG 1 cut(s) 772
TspRI CASTG 1 cut(s) 15
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 4 cut(s) 634, 769, 787, 892
XmaI CCCGGG 1 cut(s) 772
XmiI GTMKAC 2 cut(s) 339, 933
ZraI GACGTC 1 cut(s) 937
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.