Rmu_co8215596.1_g000001

HpcH/HpaI aldolase/citrate lyase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8215596.1
OG0012383
Physical Location & Seq
Forward (+)
1 .. 732
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8215596.1_g000001.1.cds

Sequence Viewer

Length: 732 bp
cgccatcaccgcctcatcaccgctcgcaaaacccatctcttccagtcccaccaccaccaatcccctatcccatctctctttccctttctccccatccaaaaccctaaacctcaccgccaaaaccacctcaatcaaatcctcctcctcctccgatctctccaccaccaccgtaacgaccacctccatctcctcctccccgcaaaccctcaagtcccgcctccacaatggcgacaccctctacggcctcttcctcctcagcttctcccccaccctcgccgagatcgccggcctctccggctacgacttcgtcgtcgtcgacatggagcacggccccggcggaatctccgaagccctctcctgcctccgcgccctcgccgccacccaaaccccggcgatcctccggctgccggaatcctccccgacctgggccaagaaagccctcgatctcggcccgcaggggatcatgttcccaatgatcgacagctccaaggaggccgagaaagccgtctcctactgccgcttccctcccgccggcatccgcggctccgcacacaccgtcgtccgagcctccagctacggcatcgacgaggggtatttgagtaattacgaggaccaattgctgatcatgtgccaggtggagaccgaggagggcgtgaagagagcggaggagatcgcggccgtcgaaggcgttgactgcgtgcagatggggccgttggatctgagcgccagcct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HpcH_HpaI

Protein Analysis

244

Amino Acids

25.68

Weight (kDa)

5.09

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10750
fragaria_vesca FvH4_5g11021 FvH4_5g11021
malus_domestica MD06G1117400.v1.1
prunus_persica Prupe.5G128500_v2.0.a1
pyrus_communis pycom06g10930
rosa_chinensis RchiOBHm_Chr7g0186781
rosa_laevigata RLG00000004816
rosa_multiflora Rmu_co8215596.1_g000001 Rmu_sc0009734.1_g000001 Rmu_sc0040245.1_g000001 Rmu_ssc0000024.1_g000045
rosa_roxburghii Rroxscaffold_3G00267830
rosa_rugosa Rorug06G0476600
rosa_samantha Rh7AG063900 Rh7BG080400 Rh7CG083600 Rh7DG084500
rosa_wichuraiana Rw7G007250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 309
AccBSI CCGCTC 2 cut(s) 23, 663
AccI GTMKAC 1 cut(s) 316
AccII CGCG 3 cut(s) 367, 541, 675
AclWI GGATC 3 cut(s) 389, 468, 724
AcoI YGGCCR 1 cut(s) 676
AfiI CCNNNNNNNGG 5 cut(s) 389, 407, 424, 425, 531
AjnI CCWGG 2 cut(s) 423, 631
AluBI AGCT 3 cut(s) 259, 484, 574
AluI AGCT 3 cut(s) 259, 484, 574
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 512, 633
AlwI GGATC 3 cut(s) 389, 468, 724
AoxI GGCC 8 cut(s) 242, 287, 329, 427, 449, 493, 676, 708
ApeKI GCWGC 1 cut(s) 404
AspLEI GCGC 2 cut(s) 369, 726
AspS9I GGNCC 5 cut(s) 330, 427, 450, 611, 708
AsuC2I CCSGG 2 cut(s) 334, 390
AsuHPI GGTGA 2 cut(s) 10, 104
AvaII GGWCC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 328
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 391
BccI CCATC 6 cut(s) 12, 42, 79, 101, 192, 698
BceAI ACGGC 6 cut(s) 257, 344, 489, 593, 663, 695
BciT130I CCWGG 2 cut(s) 425, 633
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 2 cut(s) 334, 390
BcoDI GTCTC 2 cut(s) 512, 633
BfoI RGCGCY 1 cut(s) 727
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 5 cut(s) 376, 405, 518, 542, 676
BlsI GCNGC 5 cut(s) 377, 406, 519, 543, 677
Bme1390I CCNGG 4 cut(s) 334, 390, 425, 633
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 5 cut(s) 330, 427, 450, 611, 708
BmiI GGNNCC 3 cut(s) 332, 545, 709
BmrFI CCNGG 4 cut(s) 334, 390, 425, 633
BmsI GCATC 2 cut(s) 544, 589
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 334, 390
BsaI GGTCTC 1 cut(s) 633
BsaJI CCNNGG 6 cut(s) 332, 388, 424, 487, 539, 643
Bsc4I CCNNNNNNNGG 5 cut(s) 389, 407, 424, 425, 531
Bse118I RCCGGY 2 cut(s) 285, 531
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 425, 633
BseDI CCNNGG 6 cut(s) 332, 388, 424, 487, 539, 643
BseGI GGATG 2 cut(s) 93, 535
BseLI CCNNNNNNNGG 5 cut(s) 389, 407, 424, 425, 531
BseMII CTCAG 2 cut(s) 269, 711
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 8 cut(s) 131, 134, 137, 179, 182, 243, 660, 681
BseX3I CGGCCG 1 cut(s) 676
BseXI GCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 3 cut(s) 367, 541, 675
Bsh1285I CGRYCG 1 cut(s) 679
BshFI GGCC 8 cut(s) 244, 289, 331, 429, 451, 495, 678, 710
BsiEI CGRYCG 1 cut(s) 679
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 7 cut(s) 286, 295, 334, 390, 401, 408, 532
BslFI GGGAC 2 cut(s) 31, 197
BslI CCNNNNNNNGG 5 cut(s) 389, 407, 424, 425, 531
BsmAI GTCTC 2 cut(s) 512, 633
BsmBI CGTCTC 1 cut(s) 512
BsmFI GGGAC 2 cut(s) 31, 197
BsnI GGCC 8 cut(s) 244, 289, 331, 429, 451, 495, 678, 710
Bso31I GGTCTC 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
BspANI GGCC 8 cut(s) 244, 289, 331, 429, 451, 495, 678, 710
BspCNI CTCAG 2 cut(s) 268, 712
BspFNI CGCG 3 cut(s) 367, 541, 675
BspLI GGNNCC 3 cut(s) 332, 545, 709
BspPI GGATC 3 cut(s) 389, 468, 724
BspTNI GGTCTC 1 cut(s) 633
BsrBI CCGCTC 2 cut(s) 23, 663
BsrFI RCCGGY 2 cut(s) 285, 531
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 2 cut(s) 285, 531
BssECI CCNNGG 6 cut(s) 332, 388, 424, 487, 539, 643
BssMI GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 2 cut(s) 425, 633
Bst4CI ACNGT 2 cut(s) 170, 557
Bst6I CTCTTC 3 cut(s) 44, 252, 651
BstC8I GCNNGC 6 cut(s) 25, 287, 453, 533, 699, 728
BstDEI CTNAG 2 cut(s) 255, 720
BstDSI CCRYGG 1 cut(s) 539
BstF5I GGATG 2 cut(s) 93, 535
BstFNI CGCG 3 cut(s) 367, 541, 675
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 2 cut(s) 369, 726
BstKTI GATC 9 cut(s) 155, 283, 397, 446, 463, 478, 625, 673, 719
BstMAI GTCTC 2 cut(s) 512, 633
BstMBI GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
BstMCI CGRYCG 1 cut(s) 679
BstMWI GCNNNNNNNGC 9 cut(s) 9, 282, 295, 375, 435, 501, 541, 694, 707
BstNI CCWGG 2 cut(s) 425, 633
BstSCI CCNGG 4 cut(s) 332, 388, 423, 631
BstUI CGCG 3 cut(s) 367, 541, 675
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 716
BstYI RGATCY 1 cut(s) 716
BstZI CGGCCG 1 cut(s) 676
BsuRI GGCC 8 cut(s) 244, 289, 331, 429, 451, 495, 678, 710
BtgI CCRYGG 1 cut(s) 539
BtsCI GGATG 2 cut(s) 93, 535
Cac8I GCNNGC 6 cut(s) 25, 287, 453, 533, 699, 728
CfoI GCGC 2 cut(s) 369, 726
Cfr10I RCCGGY 2 cut(s) 285, 531
Cfr13I GGNCC 5 cut(s) 330, 427, 450, 611, 708
Cfr42I CCGCGG 1 cut(s) 542
CviAII CATG 3 cut(s) 320, 464, 626
DdeI CTNAG 2 cut(s) 255, 720
DpnI GATC 9 cut(s) 154, 282, 396, 445, 462, 477, 624, 672, 718
DpnII GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 676
EagI CGGCCG 1 cut(s) 676
Eam1104I CTCTTC 3 cut(s) 44, 252, 651
EarI CTCTTC 3 cut(s) 44, 252, 651
EciI GGCGGA 1 cut(s) 352
EclXI CGGCCG 1 cut(s) 676
Eco130I CCWWGG 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 611
Eco52I CGGCCG 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 423, 631
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 3 cut(s) 323, 467, 629
FaiI YATR 3 cut(s) 321, 465, 627
FaqI GGGAC 2 cut(s) 31, 197
FatI CATG 3 cut(s) 319, 463, 625
FauI CCCGC 4 cut(s) 205, 222, 460, 536
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 376, 405, 518, 542, 676
FokI GGATG 2 cut(s) 80, 522
Fsp4HI GCNGC 5 cut(s) 376, 405, 518, 542, 676
GlaI GCGC 2 cut(s) 368, 725
GluI GCNGC 5 cut(s) 376, 405, 518, 542, 676
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 8 cut(s) 244, 289, 331, 429, 451, 495, 678, 710
HapII CCGG 7 cut(s) 286, 295, 334, 390, 401, 408, 532
HhaI GCGC 2 cut(s) 369, 726
Hin1II CATG 3 cut(s) 323, 467, 629
Hin6I GCGC 2 cut(s) 367, 724
HinP1I GCGC 2 cut(s) 367, 724
HincII GTYRAC 2 cut(s) 317, 692
HindII GTYRAC 2 cut(s) 317, 692
HinfI GANTC 2 cut(s) 340, 411
HpaII CCGG 7 cut(s) 286, 295, 334, 390, 401, 408, 532
HphI GGTGA 2 cut(s) 10, 104
Hpy166II GTNNAC 2 cut(s) 317, 692
Hpy188I TCNGA 4 cut(s) 152, 347, 564, 721
Hpy8I GTNNAC 2 cut(s) 317, 692
Hpy99I CGWCG 6 cut(s) 312, 315, 318, 561, 588, 684
HpyAV CCTTC 1 cut(s) 678
HpyCH4III ACNGT 2 cut(s) 170, 557
HpyCH4V TGCA 1 cut(s) 701
HpyF10VI GCNNNNNNNGC 9 cut(s) 9, 282, 295, 375, 435, 501, 541, 694, 707
HpyF3I CTNAG 2 cut(s) 255, 720
Hsp92II CATG 3 cut(s) 323, 467, 629
HspAI GCGC 2 cut(s) 367, 724
KroI GCCGGC 2 cut(s) 285, 531
KroNI GCCGGC 2 cut(s) 287, 533
Ksp22I TGATCA 1 cut(s) 622
KspI CCGCGG 1 cut(s) 542
Kzo9I GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
LmnI GCTCC 3 cut(s) 323, 489, 549
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 544, 589
MaeIII GTNAC 1 cut(s) 170
MalI GATC 9 cut(s) 154, 282, 396, 445, 462, 477, 624, 672, 718
MbiI CCGCTC 2 cut(s) 23, 663
MboI GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
MboII GAAGA 3 cut(s) 31, 239, 668
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 716
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 2 cut(s) 602, 615
MmeI TCCRAC 1 cut(s) 694
MroNI GCCGGC 2 cut(s) 285, 531
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 7 cut(s) 286, 295, 334, 390, 401, 408, 532
MspR9I CCNGG 4 cut(s) 334, 390, 425, 633
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 2 cut(s) 425, 633
MvnI CGCG 3 cut(s) 367, 541, 675
MwoI GCNNNNNNNGC 9 cut(s) 9, 282, 295, 375, 435, 501, 541, 694, 707
NaeI GCCGGC 2 cut(s) 287, 533
NciI CCSGG 2 cut(s) 334, 390
NdeII GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
NgoMIV GCCGGC 2 cut(s) 285, 531
NlaIII CATG 3 cut(s) 323, 467, 629
NlaIV GGNNCC 3 cut(s) 332, 545, 709
NmeAIII GCCGAG 3 cut(s) 302, 427, 521
PcsI WCGNNNNNNNCGW 4 cut(s) 307, 313, 583, 679
PdiI GCCGGC 2 cut(s) 287, 533
PfeI GAWTC 2 cut(s) 340, 411
PflFI GACNNNGTC 1 cut(s) 306
PkrI GCNGC 5 cut(s) 377, 406, 519, 543, 677
Psp6I CCWGG 2 cut(s) 423, 631
PspGI CCWGG 2 cut(s) 423, 631
PspN4I GGNNCC 3 cut(s) 332, 545, 709
PspPI GGNCC 5 cut(s) 330, 427, 450, 611, 708
PsuI RGATCY 1 cut(s) 716
PsyI GACNNNGTC 1 cut(s) 306
SacII CCGCGG 1 cut(s) 542
SalI GTCGAC 1 cut(s) 315
SatI GCNGC 5 cut(s) 376, 405, 518, 542, 676
Sau3AI GATC 9 cut(s) 152, 280, 394, 443, 460, 475, 622, 670, 716
Sau96I GGNCC 5 cut(s) 330, 427, 450, 611, 708
ScrFI CCNGG 4 cut(s) 334, 390, 425, 633
SduI GDGCHC 1 cut(s) 328
SetI ASST 8 cut(s) 112, 129, 183, 261, 426, 486, 576, 637
SfaNI GCATC 2 cut(s) 544, 589
Sfr303I CCGCGG 1 cut(s) 542
SgrBI CCGCGG 1 cut(s) 542
SinI GGWCC 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 2 cut(s) 602, 615
StyD4I CCNGG 4 cut(s) 332, 388, 423, 631
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 2 cut(s) 170, 557
TaqI TCGA 5 cut(s) 316, 442, 478, 583, 682
TaqII GACCGA 1 cut(s) 657
TasI AATT 2 cut(s) 602, 615
TauI GCSGC 4 cut(s) 378, 520, 544, 678
TfiI GAWTC 2 cut(s) 340, 411
TseI GCWGC 1 cut(s) 404
Tth111I GACNNNGTC 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.