RLG00000004816

HpcH/HpaI aldolase/citrate lyase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
62773950 .. 62775328
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004816

Sequence Viewer

Length: 1050 bp
ATGGCCACACTGACTCACGCCTCCGCCTCATCACCTCTCGGAAAACCCATCTCTTCTAGTCCCACCACCACCAAAGCCCTATCCCATCTCTCTTTCCCTTTCTCCCCATCCAAAACCCTAAACCTCACCGCCAAAACCACCTCAATCAAATCATCCTCCTCCGATCTCTCCACCACCACCGTCAACACCACCTCCATCTCCTCCTCCCCGCAAACCCTCAAGTCCCGCCTCCACAATGGCGACACCCTCTACGGCCTCTTCCTCCTCAGCTTCTCCCCCACCCTCGCCGAGATCGCCGGCCTCTCCGGCTACGACTTCGTCGTCGTCGACATGGAGCACGGCCCCGGCGGAATCTCCGAAGCCCTCTCCTGCCTCCGCGCCCTCGCCGCCACCCAAACCCCGGCGATCCTCCGGCTGCCGGAATCCTCCGCGACCTGGGCCAAGAAAGCCCTAGATCTCGGCCCGCAGGGTATCATGTTCCCGATGATAGACAGCTCCAAGGAGGCCCAGAAAGCCGTCTCCTACTGCCGCTTCCCTCCCGCCGGAATCCGCGGCTCCGCCCACACCGTCGTCCGCGCCTCCAGCTACGGCATCGACGAGGGGTATTTGAGTAATTACGAGGACCAATTGCTGATCATGTGCCAGGTGGAGAGCGAGGAGGGCGTGAAGCGAGCGGAGGAGATCGCGGCCGTCGAAGGAGTTGACTGCGTGCAGATTGGGCCGTTGGATCTGAGCGCCAGCTTGGGGTACCTGTGGGACCCGGGGAACAAGAAGGTCCGGAGCGCGTTGAAGGTTGCCGAGAAGGCCGTGCTGGGCACCGACCCCCTTGTGGGTGGGGCCTACTTGGCTGGGTTCGCTATGCCCCACGATGGGCCCCAGGACCTGAGGACACGTGGCTACCACATGGTGTCCGGTTCCGTCGACGTCGGGCTGTTTAGGAGCGCAGCGGTGGAGGACGTGAGGAGGTTTCAGGCGAGCTTGATCAACGGCTCTGATGAGGAGGAGGGGGAGCATGGTGATGATGCAGATGAGAAGTACTGGAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

350

Amino Acids

37.0

Weight (kDa)

5.17

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HpcH_HpaI PF03328 84 - 314 1.4e-54 HpcH/HpaI aldolase/citrate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012383)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AatII GACGTC 1 cut(s) 927
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 747, 815
AccBSI CCGCTC 1 cut(s) 674
AccI GTMKAC 2 cut(s) 327, 921
AccII CGCG 6 cut(s) 378, 431, 552, 576, 686, 785
AccIII TCCGGA 1 cut(s) 777
AclWI GGATC 2 cut(s) 400, 735
AcoI YGGCCR 2 cut(s) 3, 687
AcvI CACGTG 1 cut(s) 893
AcyI GRCGYC 1 cut(s) 924
AdeI CACNNNGTG 1 cut(s) 907
AfaI GTAC 2 cut(s) 749, 1037
AfiI CCNNNNNNNGG 9 cut(s) 400, 418, 435, 542, 744, 829, 830, 869, 870
AflIII ACRYGT 1 cut(s) 890
AgsI TTSAA 1 cut(s) 790
AjiI CACGTC 1 cut(s) 958
AjnI CCWGG 3 cut(s) 434, 642, 876
AluBI AGCT 5 cut(s) 270, 495, 585, 741, 978
AluI AGCT 5 cut(s) 270, 495, 585, 741, 978
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 2 cut(s) 400, 735
AlwNI CAGNNNCTG 1 cut(s) 883
Ama87I CYCGRG 1 cut(s) 760
Aor13HI TCCGGA 1 cut(s) 777
ApaI GGGCCC 1 cut(s) 876
ApeKI GCWGC 2 cut(s) 415, 944
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 5 cut(s) 380, 578, 737, 785, 944
AsuC2I CCSGG 4 cut(s) 345, 401, 761, 762
AsuHPI GGTGA 3 cut(s) 24, 118, 1028
AvaI CYCGRG 1 cut(s) 760
AvaII GGWCC 4 cut(s) 622, 757, 775, 880
AxyI CCTNAGG 1 cut(s) 884
BaeGI GKGCMC 2 cut(s) 818, 876
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 747, 815
BanII GRGCYC 1 cut(s) 876
BbrPI CACGTG 1 cut(s) 893
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 402, 956
BccI CCATC 5 cut(s) 56, 93, 115, 203, 863
BceAI ACGGC 8 cut(s) 268, 355, 500, 604, 674, 706, 791, 1003
BciT130I CCWGG 3 cut(s) 436, 644, 878
BclI TGATCA 2 cut(s) 633, 981
BcnI CCSGG 4 cut(s) 345, 401, 761, 762
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 2 cut(s) 57, 452
BfoI RGCGCY 1 cut(s) 738
BglI GCCNNNNNGGC 3 cut(s) 306, 803, 845
BglII AGATCT 1 cut(s) 454
BisI GCNGC 6 cut(s) 387, 416, 529, 553, 687, 945
BlsI GCNGC 6 cut(s) 388, 417, 530, 554, 688, 946
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 7 cut(s) 345, 401, 436, 644, 761, 762, 878
Bme18I GGWCC 4 cut(s) 622, 757, 775, 880
BmeT110I CYCGRG 1 cut(s) 760
BmgBI CACGTC 1 cut(s) 958
BmrFI CCNGG 7 cut(s) 345, 401, 436, 644, 761, 762, 878
BmsI GCATC 2 cut(s) 600, 1012
BpmI CTGGAG 1 cut(s) 565
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 4 cut(s) 345, 401, 761, 762
BsaAI YACGTR 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 924
BsaJI CCNNGG 8 cut(s) 343, 399, 435, 498, 550, 760, 761, 876
BsaWI WCCGGW 2 cut(s) 777, 911
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 9 cut(s) 400, 418, 435, 542, 744, 829, 830, 869, 870
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 1043
Bse21I CCTNAGG 1 cut(s) 884
BseAI TCCGGA 1 cut(s) 777
BseBI CCWGG 3 cut(s) 436, 644, 878
BseDI CCNNGG 8 cut(s) 343, 399, 435, 498, 550, 760, 761, 876
BseGI GGATG 2 cut(s) 107, 152
BseLI CCNNNNNNNGG 9 cut(s) 400, 418, 435, 542, 744, 829, 830, 869, 870
BseMII CTCAG 3 cut(s) 280, 722, 875
BseNI ACTGG 1 cut(s) 1043
BseRI GAGGAG 9 cut(s) 148, 190, 193, 254, 671, 692, 976, 1013, 1016
BseSI GKGCMC 2 cut(s) 818, 876
BseX3I CGGCCG 1 cut(s) 687
BseXI GCAGC 2 cut(s) 402, 956
BseYI CCCAGC 2 cut(s) 811, 848
BsgI GTGCAG 1 cut(s) 731
Bsh1236I CGCG 6 cut(s) 378, 431, 552, 576, 686, 785
Bsh1285I CGRYCG 1 cut(s) 690
BshNI GGYRCC 2 cut(s) 747, 815
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 760
BslFI GGGAC 3 cut(s) 45, 208, 770
BslI CCNNNNNNNGG 9 cut(s) 400, 418, 435, 542, 744, 829, 830, 869, 870
BsmAI GTCTC 1 cut(s) 523
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 3 cut(s) 45, 208, 770
BsoBI CYCGRG 1 cut(s) 760
Bsp120I GGGCCC 1 cut(s) 872
Bsp1286I GDGCHC 3 cut(s) 339, 818, 876
Bsp13I TCCGGA 1 cut(s) 777
Bsp143I GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
BspCNI CTCAG 3 cut(s) 279, 723, 876
BspEI TCCGGA 1 cut(s) 777
BspFNI CGCG 6 cut(s) 378, 431, 552, 576, 686, 785
BspPI GGATC 2 cut(s) 400, 735
BspT107I GGYRCC 2 cut(s) 747, 815
BsrBI CCGCTC 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 1043
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 8 cut(s) 343, 399, 435, 498, 550, 760, 761, 876
BssMI GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
BssNI GRCGYC 1 cut(s) 924
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 436, 644, 878
Bst4CI ACNGT 2 cut(s) 181, 568
Bst6I CTCTTC 2 cut(s) 58, 263
BstACI GRCGYC 1 cut(s) 924
BstBAI YACGTR 1 cut(s) 893
BstC8I GCNNGC 6 cut(s) 298, 464, 672, 710, 739, 976
BstDEI CTNAG 3 cut(s) 266, 731, 884
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 2 cut(s) 107, 152
BstFNI CGCG 6 cut(s) 378, 431, 552, 576, 686, 785
BstH2I RGCGCY 1 cut(s) 738
BstHHI GCGC 5 cut(s) 380, 578, 737, 785, 944
BstKTI GATC 8 cut(s) 166, 294, 408, 457, 636, 684, 730, 984
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
BstMCI CGRYCG 1 cut(s) 690
BstNI CCWGG 3 cut(s) 436, 644, 878
BstSCI CCNGG 7 cut(s) 343, 399, 434, 642, 759, 760, 876
BstSLI GKGCMC 2 cut(s) 818, 876
BstUI CGCG 6 cut(s) 378, 431, 552, 576, 686, 785
BstV1I GCAGC 2 cut(s) 402, 956
BstX2I RGATCY 2 cut(s) 454, 727
BstYI RGATCY 2 cut(s) 454, 727
BstZI CGGCCG 1 cut(s) 687
Bsu36I CCTNAGG 1 cut(s) 884
BtgI CCRYGG 1 cut(s) 550
BtrI CACGTC 1 cut(s) 958
BtsCI GGATG 2 cut(s) 107, 152
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 6 cut(s) 298, 464, 672, 710, 739, 976
CaiI CAGNNNCTG 1 cut(s) 883
CfoI GCGC 5 cut(s) 380, 578, 737, 785, 944
Cfr10I RCCGGY 1 cut(s) 296
Cfr42I CCGCGG 1 cut(s) 553
Cfr9I CCCGGG 1 cut(s) 760
Csp6I GTAC 2 cut(s) 748, 1036
CviAII CATG 5 cut(s) 331, 475, 637, 904, 1013
CviQI GTAC 2 cut(s) 748, 1036
DdeI CTNAG 3 cut(s) 266, 731, 884
DpnI GATC 8 cut(s) 165, 293, 407, 456, 635, 683, 729, 983
DpnII GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
DraIII CACNNNGTG 1 cut(s) 907
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 2 cut(s) 3, 687
EagI CGGCCG 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 58, 263
EarI CTCTTC 2 cut(s) 58, 263
EciI GGCGGA 3 cut(s) 13, 363, 547
EclXI CGGCCG 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 876
Eco47I GGWCC 4 cut(s) 622, 757, 775, 880
Eco52I CGGCCG 1 cut(s) 687
Eco72I CACGTG 1 cut(s) 893
Eco81I CCTNAGG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 760
EcoO109I RGGNCCY 4 cut(s) 757, 837, 873, 880
EcoRII CCWGG 3 cut(s) 434, 642, 876
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 5 cut(s) 334, 478, 640, 907, 1016
FaiI YATR 6 cut(s) 332, 476, 638, 860, 905, 1014
FaqI GGGAC 3 cut(s) 45, 208, 770
FatI CATG 5 cut(s) 330, 474, 636, 903, 1012
FauI CCCGC 4 cut(s) 216, 233, 471, 547
FbaI TGATCA 2 cut(s) 633, 981
FblI GTMKAC 2 cut(s) 327, 921
Fnu4HI GCNGC 6 cut(s) 387, 416, 529, 553, 687, 945
FokI GGATG 2 cut(s) 94, 139
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 6 cut(s) 387, 416, 529, 553, 687, 945
FspBI CTAG 2 cut(s) 57, 452
GlaI GCGC 5 cut(s) 379, 577, 736, 784, 943
GluI GCNGC 6 cut(s) 387, 416, 529, 553, 687, 945
GsaI CCCAGC 2 cut(s) 815, 852
GsuI CTGGAG 1 cut(s) 565
HaeII RGCGCY 1 cut(s) 738
HhaI GCGC 5 cut(s) 380, 578, 737, 785, 944
Hin1I GRCGYC 1 cut(s) 924
Hin1II CATG 5 cut(s) 334, 478, 640, 907, 1016
Hin6I GCGC 5 cut(s) 378, 576, 735, 783, 942
HinP1I GCGC 5 cut(s) 378, 576, 735, 783, 942
HincII GTYRAC 4 cut(s) 184, 328, 703, 922
HindII GTYRAC 4 cut(s) 184, 328, 703, 922
HinfI GANTC 4 cut(s) 13, 351, 422, 546
HphI GGTGA 3 cut(s) 24, 118, 1028
Hpy166II GTNNAC 4 cut(s) 184, 328, 703, 922
Hpy188I TCNGA 5 cut(s) 41, 163, 358, 732, 994
Hpy188III TCNNGA 2 cut(s) 481, 778
Hpy8I GTNNAC 4 cut(s) 184, 328, 703, 922
Hpy99I CGWCG 9 cut(s) 323, 326, 329, 572, 599, 695, 923, 926, 929
HpyAV CCTTC 4 cut(s) 689, 766, 784, 796
HpyCH4III ACNGT 2 cut(s) 181, 568
HpyCH4IV ACGT 3 cut(s) 892, 924, 957
HpyCH4V TGCA 2 cut(s) 712, 1025
HpyF3I CTNAG 3 cut(s) 266, 731, 884
HpySE526I ACGT 3 cut(s) 892, 924, 957
Hsp92I GRCGYC 1 cut(s) 924
Hsp92II CATG 5 cut(s) 334, 478, 640, 907, 1016
HspAI GCGC 5 cut(s) 378, 576, 735, 783, 942
KflI GGGWCCC 1 cut(s) 757
Kpn2I TCCGGA 1 cut(s) 777
KpnI GGTACC 1 cut(s) 751
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Ksp22I TGATCA 2 cut(s) 633, 981
KspI CCGCGG 1 cut(s) 553
Kzo9I GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
LmnI GCTCC 7 cut(s) 334, 500, 560, 780, 939, 1009, 1041
Lsp1109I GCAGC 2 cut(s) 402, 956
LweI GCATC 2 cut(s) 600, 1012
MaeI CTAG 2 cut(s) 57, 452
MaeII ACGT 3 cut(s) 892, 924, 957
MalI GATC 8 cut(s) 165, 293, 407, 456, 635, 683, 729, 983
MbiI CCGCTC 1 cut(s) 674
MboI GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
MboII GAAGA 2 cut(s) 45, 250
MfeI CAATTG 1 cut(s) 626
MflI RGATCY 2 cut(s) 454, 727
MhlI GDGCHC 3 cut(s) 339, 818, 876
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 613, 626
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 705
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 777
MroNI GCCGGC 1 cut(s) 296
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 1017
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 552, 947
MspR9I CCNGG 7 cut(s) 345, 401, 436, 644, 761, 762, 878
MunI CAATTG 1 cut(s) 626
MvaI CCWGG 3 cut(s) 436, 644, 878
MvnI CGCG 6 cut(s) 378, 431, 552, 576, 686, 785
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 4 cut(s) 345, 401, 761, 762
NdeII GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 5 cut(s) 334, 478, 640, 907, 1016
NmeAIII GCCGAG 3 cut(s) 313, 438, 823
PcsI WCGNNNNNNNCGW 4 cut(s) 318, 324, 594, 690
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 351, 422, 546
PflFI GACNNNGTC 1 cut(s) 317
PkrI GCNGC 6 cut(s) 388, 417, 530, 554, 688, 946
PleI GAGTC 1 cut(s) 7
PmaCI CACGTG 1 cut(s) 893
PmlI CACGTG 1 cut(s) 893
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 893
PpuMI RGGWCCY 2 cut(s) 757, 880
Psp5II RGGWCCY 2 cut(s) 757, 880
Psp6I CCWGG 3 cut(s) 434, 642, 876
PspCI CACGTG 1 cut(s) 893
PspFI CCCAGC 2 cut(s) 811, 848
PspGI CCWGG 3 cut(s) 434, 642, 876
PspOMI GGGCCC 1 cut(s) 872
PspPPI RGGWCCY 2 cut(s) 757, 880
PstNI CAGNNNCTG 1 cut(s) 883
PsuI RGATCY 2 cut(s) 454, 727
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 2 cut(s) 749, 1037
RsaNI GTAC 2 cut(s) 748, 1036
RseI CAYNNNNRTG 1 cut(s) 1017
SacII CCGCGG 1 cut(s) 553
SalI GTCGAC 2 cut(s) 326, 920
SatI GCNGC 6 cut(s) 387, 416, 529, 553, 687, 945
Sau3AI GATC 8 cut(s) 163, 291, 405, 454, 633, 681, 727, 981
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 7 cut(s) 345, 401, 436, 644, 761, 762, 878
SduI GDGCHC 3 cut(s) 339, 818, 876
SfaNI GCATC 2 cut(s) 600, 1012
Sfr303I CCGCGG 1 cut(s) 553
SgrBI CCGCGG 1 cut(s) 553
SgrDI CGTCGACG 1 cut(s) 920
SinI GGWCC 4 cut(s) 622, 757, 775, 880
SmaI CCCGGG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 613, 626
SspMI CTAG 2 cut(s) 57, 452
StyD4I CCNGG 7 cut(s) 343, 399, 434, 642, 759, 760, 876
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 181, 568
TaiI ACGT 3 cut(s) 895, 927, 960
TaqI TCGA 4 cut(s) 327, 594, 693, 921
TasI AATT 2 cut(s) 613, 626
TatI WGTACW 1 cut(s) 1035
TauI GCSGC 4 cut(s) 389, 531, 555, 689
TfiI GAWTC 3 cut(s) 351, 422, 546
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 415, 944
TspGWI ACGGA 1 cut(s) 907
TspMI CCCGGG 1 cut(s) 760
TspRI CASTG 1 cut(s) 15
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 4 cut(s) 622, 757, 775, 880
XmaI CCCGGG 1 cut(s) 760
XmiI GTMKAC 2 cut(s) 327, 921
XspI CTAG 2 cut(s) 57, 452
ZraI GACGTC 1 cut(s) 925
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.