Rh7BG080400

HpcH/HpaI aldolase/citrate lyase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012383
Physical Location & Seq
Forward (+)
5810842 .. 5811561
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG080400.1

Sequence Viewer

Length: 720 bp
ATGGAGCACGGTCCCGGCGGCGTCTCCGAGGCCCTCTCCTGCCTCCGCGCCCTCGCCGCCACCCAGACCCCGGCGATCCTCCGGCTGCCGGAATCCTCCCCGACCTGGGCCAAGAAAGCCCTTGATCTCGGCCCGCAGGGGATCATGTTCCCGATGATCGACAGCTCCAAGGAGGCCGAGAAAGCCGTCTCCTACTGCCGCTTCCCTCCCGCCGGAATCCGCGGCTCCGCCCACACCGTCGTCCGCGCCTCCAGCTACGGCATCGACGAGGGGTATTTGAGTAATTACGAGGACCAATTGCTGATCATGTGCCAGGTGGAGAGCGAGGAGGGCGTGAAGAGAGCGGAGGAGATCGCGGCCGTCGAAGGCGTTGACTGCGTGCAGATGGGGCCGTTGGATCTGAGCGCCAGCTTGGGGTACCTGTGGGACCCGGGGAACAAGAAGGTCCGGAACGCGTTGAAGGTTGCCGAGAAGGCCGTGCTGGGCACCGACCCCCTTGTGGGTGGGGCCTACTTGGCTGGGTTCGCTATGCCCCACGATGGGCCCCAGGACCTGAGGACACGTGGCTACCACATGGTGTCCGGTTCCGTCGACGTCGGGCTGTTTAGGAGCGCAGCGGTGGAGGACGTGAGGAGGTTTCAGGCGAGCTTGATCAACGGCTCTGATGAGGAGGAGGAGGAGCATGGTGATGATGCAGATGAGAAGTACTGGAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HpcH_HpaI

Protein Analysis

239

Amino Acids

25.72

Weight (kDa)

4.71

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HpcH_HpaI PF03328 1 - 204 1.1e-44 HpcH/HpaI aldolase/citrate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10750
fragaria_vesca FvH4_5g11021 FvH4_5g11021
malus_domestica MD06G1117400.v1.1
prunus_persica Prupe.5G128500_v2.0.a1
pyrus_communis pycom06g10930
rosa_chinensis RchiOBHm_Chr7g0186781
rosa_laevigata RLG00000004816
rosa_multiflora Rmu_co8215596.1_g000001 Rmu_sc0009734.1_g000001 Rmu_sc0040245.1_g000001 Rmu_ssc0000024.1_g000045
rosa_roxburghii Rroxscaffold_3G00267830
rosa_rugosa Rorug06G0476600
rosa_samantha Rh7AG063900 Rh7BG080400 Rh7CG083600 Rh7DG084500
rosa_wichuraiana Rw7G007250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 417
AccB1I GGYRCC 2 cut(s) 417, 485
AccBSI CCGCTC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 591
AccII CGCG 5 cut(s) 48, 222, 246, 356, 455
AccIII TCCGGA 1 cut(s) 447
AclWI GGATC 3 cut(s) 70, 149, 405
AcoI YGGCCR 1 cut(s) 357
AcvI CACGTG 1 cut(s) 563
AcyI GRCGYC 2 cut(s) 21, 594
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 2 cut(s) 419, 707
AflIII ACRYGT 2 cut(s) 453, 560
AgsI TTSAA 1 cut(s) 460
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 3 cut(s) 104, 312, 546
AluBI AGCT 4 cut(s) 165, 255, 411, 648
AluI AGCT 4 cut(s) 165, 255, 411, 648
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 28, 193
AlwI GGATC 3 cut(s) 70, 149, 405
AlwNI CAGNNNCTG 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 430
Aor13HI TCCGGA 1 cut(s) 447
AoxI GGCC 9 cut(s) 30, 108, 130, 174, 357, 389, 474, 507, 542
ApaI GGGCCC 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 85, 614
Asp718I GGTACC 1 cut(s) 417
AspLEI GCGC 4 cut(s) 50, 248, 407, 614
AsuC2I CCSGG 4 cut(s) 15, 71, 431, 432
AsuHPI GGTGA 1 cut(s) 698
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 5 cut(s) 11, 292, 427, 445, 550
AxyI CCTNAGG 1 cut(s) 554
BaeGI GKGCMC 2 cut(s) 488, 546
BanI GGYRCC 2 cut(s) 417, 485
BanII GRGCYC 1 cut(s) 546
BbrPI CACGTG 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 72, 626
BccI CCATC 2 cut(s) 379, 533
BceAI ACGGC 6 cut(s) 170, 274, 344, 376, 461, 673
BciT130I CCWGG 3 cut(s) 106, 314, 548
BclI TGATCA 2 cut(s) 303, 651
BcnI CCSGG 4 cut(s) 15, 71, 431, 432
BcoDI GTCTC 2 cut(s) 28, 193
BfoI RGCGCY 1 cut(s) 408
BglI GCCNNNNNGGC 2 cut(s) 473, 515
BisI GCNGC 7 cut(s) 19, 57, 86, 199, 223, 357, 615
BlsI GCNGC 7 cut(s) 20, 58, 87, 200, 224, 358, 616
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 7 cut(s) 15, 71, 106, 314, 431, 432, 548
Bme18I GGWCC 5 cut(s) 11, 292, 427, 445, 550
BmeT110I CYCGRG 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 628
BmrFI CCNGG 7 cut(s) 15, 71, 106, 314, 431, 432, 548
BmsI GCATC 2 cut(s) 270, 682
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 235
BpuMI CCSGG 4 cut(s) 15, 71, 431, 432
BsaAI YACGTR 1 cut(s) 563
BsaHI GRCGYC 2 cut(s) 21, 594
BsaJI CCNNGG 8 cut(s) 27, 69, 105, 168, 220, 430, 431, 546
BsaWI WCCGGW 2 cut(s) 447, 581
Bse1I ACTGG 1 cut(s) 713
Bse21I CCTNAGG 1 cut(s) 554
BseAI TCCGGA 1 cut(s) 447
BseBI CCWGG 3 cut(s) 106, 314, 548
BseDI CCNNGG 8 cut(s) 27, 69, 105, 168, 220, 430, 431, 546
BseMII CTCAG 2 cut(s) 392, 545
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 7 cut(s) 341, 362, 646, 683, 686, 689, 692
BseSI GKGCMC 2 cut(s) 488, 546
BseX3I CGGCCG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 72, 626
BseYI CCCAGC 2 cut(s) 481, 518
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 5 cut(s) 48, 222, 246, 356, 455
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 9 cut(s) 32, 110, 132, 176, 359, 391, 476, 509, 544
BshNI GGYRCC 2 cut(s) 417, 485
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 8 cut(s) 15, 71, 82, 89, 213, 431, 448, 582
BslFI GGGAC 1 cut(s) 440
BsmAI GTCTC 2 cut(s) 28, 193
BsmBI CGTCTC 2 cut(s) 28, 193
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 9 cut(s) 32, 110, 132, 176, 359, 391, 476, 509, 544
BsoBI CYCGRG 1 cut(s) 430
Bsp120I GGGCCC 1 cut(s) 542
Bsp1286I GDGCHC 3 cut(s) 9, 488, 546
Bsp13I TCCGGA 1 cut(s) 447
Bsp143I GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
BspANI GGCC 9 cut(s) 32, 110, 132, 176, 359, 391, 476, 509, 544
BspCNI CTCAG 2 cut(s) 393, 546
BspEI TCCGGA 1 cut(s) 447
BspFNI CGCG 5 cut(s) 48, 222, 246, 356, 455
BspPI GGATC 3 cut(s) 70, 149, 405
BspT107I GGYRCC 2 cut(s) 417, 485
BsrBI CCGCTC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 713
BssECI CCNNGG 8 cut(s) 27, 69, 105, 168, 220, 430, 431, 546
BssMI GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
BssNI GRCGYC 2 cut(s) 21, 594
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 106, 314, 548
Bst4CI ACNGT 2 cut(s) 11, 238
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 2 cut(s) 21, 594
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 4 cut(s) 134, 380, 409, 646
BstDEI CTNAG 2 cut(s) 401, 554
BstDSI CCRYGG 1 cut(s) 220
BstFNI CGCG 5 cut(s) 48, 222, 246, 356, 455
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 4 cut(s) 50, 248, 407, 614
BstKTI GATC 8 cut(s) 78, 127, 144, 159, 306, 354, 400, 654
BstMAI GTCTC 2 cut(s) 28, 193
BstMBI GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
BstMCI CGRYCG 1 cut(s) 360
BstNI CCWGG 3 cut(s) 106, 314, 548
BstSCI CCNGG 7 cut(s) 13, 69, 104, 312, 429, 430, 546
BstSLI GKGCMC 2 cut(s) 488, 546
BstUI CGCG 5 cut(s) 48, 222, 246, 356, 455
BstV1I GCAGC 2 cut(s) 72, 626
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BstZI CGGCCG 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 554
BsuRI GGCC 9 cut(s) 32, 110, 132, 176, 359, 391, 476, 509, 544
BtgI CCRYGG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 628
Cac8I GCNNGC 4 cut(s) 134, 380, 409, 646
CaiI CAGNNNCTG 1 cut(s) 553
CfoI GCGC 4 cut(s) 50, 248, 407, 614
Cfr42I CCGCGG 1 cut(s) 223
Cfr9I CCCGGG 1 cut(s) 430
CseI GACGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 418, 706
CviAII CATG 4 cut(s) 145, 307, 574, 683
CviQI GTAC 2 cut(s) 418, 706
DdeI CTNAG 2 cut(s) 401, 554
DpnI GATC 8 cut(s) 77, 126, 143, 158, 305, 353, 399, 653
DpnII GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
DraIII CACNNNGTG 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 357
EagI CGGCCG 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 217
EclXI CGGCCG 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 546
Eco47I GGWCC 5 cut(s) 11, 292, 427, 445, 550
Eco52I CGGCCG 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 563
Eco81I CCTNAGG 1 cut(s) 554
Eco88I CYCGRG 1 cut(s) 430
EcoO109I RGGNCCY 5 cut(s) 31, 427, 507, 543, 550
EcoRII CCWGG 3 cut(s) 104, 312, 546
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 2 cut(s) 28, 193
FaeI CATG 4 cut(s) 148, 310, 577, 686
FaiI YATR 5 cut(s) 146, 308, 530, 575, 684
FaqI GGGAC 1 cut(s) 440
FatI CATG 4 cut(s) 144, 306, 573, 682
FauI CCCGC 2 cut(s) 141, 217
FbaI TGATCA 2 cut(s) 303, 651
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 7 cut(s) 19, 57, 86, 199, 223, 357, 615
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 7 cut(s) 19, 57, 86, 199, 223, 357, 615
GlaI GCGC 4 cut(s) 49, 247, 406, 613
GluI GCNGC 7 cut(s) 19, 57, 86, 199, 223, 357, 615
GsaI CCCAGC 2 cut(s) 485, 522
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 9 cut(s) 32, 110, 132, 176, 359, 391, 476, 509, 544
HapII CCGG 8 cut(s) 15, 71, 82, 89, 213, 431, 448, 582
HgaI GACGC 1 cut(s) 10
HhaI GCGC 4 cut(s) 50, 248, 407, 614
Hin1I GRCGYC 2 cut(s) 21, 594
Hin1II CATG 4 cut(s) 148, 310, 577, 686
Hin6I GCGC 4 cut(s) 48, 246, 405, 612
HinP1I GCGC 4 cut(s) 48, 246, 405, 612
HincII GTYRAC 2 cut(s) 373, 592
HindII GTYRAC 2 cut(s) 373, 592
HinfI GANTC 2 cut(s) 92, 216
HpaII CCGG 8 cut(s) 15, 71, 82, 89, 213, 431, 448, 582
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 2 cut(s) 373, 592
Hpy188I TCNGA 3 cut(s) 28, 402, 664
Hpy188III TCNNGA 2 cut(s) 151, 448
Hpy8I GTNNAC 2 cut(s) 373, 592
Hpy99I CGWCG 6 cut(s) 242, 269, 365, 593, 596, 599
HpyAV CCTTC 4 cut(s) 359, 436, 454, 466
HpyCH4III ACNGT 2 cut(s) 11, 238
HpyCH4IV ACGT 3 cut(s) 562, 594, 627
HpyCH4V TGCA 2 cut(s) 382, 695
HpyF3I CTNAG 2 cut(s) 401, 554
HpySE526I ACGT 3 cut(s) 562, 594, 627
Hsp92I GRCGYC 2 cut(s) 21, 594
Hsp92II CATG 4 cut(s) 148, 310, 577, 686
HspAI GCGC 4 cut(s) 48, 246, 405, 612
KflI GGGWCCC 1 cut(s) 427
Kpn2I TCCGGA 1 cut(s) 447
KpnI GGTACC 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 303, 651
KspI CCGCGG 1 cut(s) 223
Kzo9I GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
LmnI GCTCC 6 cut(s) 4, 170, 230, 609, 679, 711
Lsp1109I GCAGC 2 cut(s) 72, 626
LweI GCATC 2 cut(s) 270, 682
MaeII ACGT 3 cut(s) 562, 594, 627
MalI GATC 8 cut(s) 77, 126, 143, 158, 305, 353, 399, 653
MbiI CCGCTC 1 cut(s) 344
MboI GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
MboII GAAGA 1 cut(s) 349
MfeI CAATTG 1 cut(s) 296
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 9, 488, 546
MluCI AATT 2 cut(s) 283, 296
MluI ACGCGT 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 375
MroI TCCGGA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 2 cut(s) 222, 617
MspI CCGG 8 cut(s) 15, 71, 82, 89, 213, 431, 448, 582
MspR9I CCNGG 7 cut(s) 15, 71, 106, 314, 431, 432, 548
MunI CAATTG 1 cut(s) 296
MvaI CCWGG 3 cut(s) 106, 314, 548
MvnI CGCG 5 cut(s) 48, 222, 246, 356, 455
NciI CCSGG 4 cut(s) 15, 71, 431, 432
NdeII GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
NlaIII CATG 4 cut(s) 148, 310, 577, 686
NmeAIII GCCGAG 3 cut(s) 108, 202, 493
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 360
PfeI GAWTC 2 cut(s) 92, 216
PkrI GCNGC 7 cut(s) 20, 58, 87, 200, 224, 358, 616
PmaCI CACGTG 1 cut(s) 563
PmlI CACGTG 1 cut(s) 563
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 2 cut(s) 427, 550
Psp5II RGGWCCY 2 cut(s) 427, 550
Psp6I CCWGG 3 cut(s) 104, 312, 546
PspCI CACGTG 1 cut(s) 563
PspFI CCCAGC 2 cut(s) 481, 518
PspGI CCWGG 3 cut(s) 104, 312, 546
PspOMI GGGCCC 1 cut(s) 542
PspPPI RGGWCCY 2 cut(s) 427, 550
PstNI CAGNNNCTG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 2 cut(s) 419, 707
RsaNI GTAC 2 cut(s) 418, 706
RseI CAYNNNNRTG 1 cut(s) 687
SacII CCGCGG 1 cut(s) 223
SalI GTCGAC 1 cut(s) 590
SatI GCNGC 7 cut(s) 19, 57, 86, 199, 223, 357, 615
Sau3AI GATC 8 cut(s) 75, 124, 141, 156, 303, 351, 397, 651
ScaI AGTACT 1 cut(s) 707
ScrFI CCNGG 7 cut(s) 15, 71, 106, 314, 431, 432, 548
SduI GDGCHC 3 cut(s) 9, 488, 546
SfaNI GCATC 2 cut(s) 270, 682
Sfr303I CCGCGG 1 cut(s) 223
SgrBI CCGCGG 1 cut(s) 223
SgrDI CGTCGACG 1 cut(s) 590
SinI GGWCC 5 cut(s) 11, 292, 427, 445, 550
SmaI CCCGGG 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 687
Sse9I AATT 2 cut(s) 283, 296
StyD4I CCNGG 7 cut(s) 13, 69, 104, 312, 429, 430, 546
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 11, 238
TaiI ACGT 3 cut(s) 565, 597, 630
TaqI TCGA 4 cut(s) 159, 264, 363, 591
TasI AATT 2 cut(s) 283, 296
TatI WGTACW 1 cut(s) 705
TauI GCSGC 5 cut(s) 21, 59, 201, 225, 359
TfiI GAWTC 2 cut(s) 92, 216
TseI GCWGC 2 cut(s) 85, 614
TspGWI ACGGA 1 cut(s) 577
TspMI CCCGGG 1 cut(s) 430
VpaK11BI GGWCC 5 cut(s) 11, 292, 427, 445, 550
XmaI CCCGGG 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 591
ZraI GACGTC 1 cut(s) 595
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.