MD06G1158600.v1.1

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0005964
Physical Location & Seq
Forward (+)
30036656 .. 30038447
1792 bp
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UTR
Exon/CDS
Intron
MD06G1158600.v1.1.491

Sequence Viewer

Length: 255 bp
ATGGCTTCGGATAAAGGTCGACCGTTGCCGAAATTCGGGGAATGGGATGTAAACAACCCAGCTTCAGCTGAAGGATTTACTGTTATATTCAACAAGGCCAGAGATGACAAGAAGACCAGTGCGGCTCAAGTGAAGATCGTCACCCCACGAAAAAATGACGGCAGCACACGAAGAAATGGTGCTGGATACAACACTGTCAATGAGCATTATCCTAAGTATCCTCCCCCAAAGAATAAATGGTTTTGCTGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

85

Amino Acids

9.37

Weight (kDa)

9.7

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 5 - 38 1.7e-19 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 48, 90
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 2 cut(s) 62, 68
AluI AGCT 2 cut(s) 62, 68
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 174
BceAI ACGGC 1 cut(s) 175
BciVI GTATCC 2 cut(s) 179, 228
BfuI GTATCC 2 cut(s) 179, 228
BisI GCNGC 2 cut(s) 123, 163
BlsI GCNGC 2 cut(s) 124, 164
BpiI GAAGAC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 117
BssMI GATC 1 cut(s) 135
Bst4CI ACNGT 3 cut(s) 24, 82, 196
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMCI CGRYCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 119
BsuI GTATCC 2 cut(s) 179, 228
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 124, 192
CviJI RGCY 5 cut(s) 5, 62, 68, 98, 125
CviKI_1 RGCY 5 cut(s) 5, 62, 68, 98, 125
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 48, 90
FaiI YATR 1 cut(s) 86
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 123, 163
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 123, 163
GluI GCNGC 2 cut(s) 123, 163
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 20
HindII GTYRAC 1 cut(s) 20
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 20, 52
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 20, 52
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 24, 82, 196
HpyF3I CTNAG 1 cut(s) 213
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 72, 112, 130, 168
Lsp1109I GCAGC 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 3 cut(s) 124, 145, 183
MluCI AATT 1 cut(s) 32
MnlI CCTC 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 68
NdeII GATC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 124, 164
PspFI CCCAGC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 68
SalI GTCGAC 1 cut(s) 18
SatI GCNGC 2 cut(s) 123, 163
Sau3AI GATC 1 cut(s) 135
SetI ASST 3 cut(s) 19, 64, 70
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 122
TaaI ACNGT 3 cut(s) 24, 82, 196
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 32
TauI GCSGC 1 cut(s) 125
TscAI CASTG 2 cut(s) 124, 199
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 139
TspRI CASTG 2 cut(s) 124, 199
XapI RAATTY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.