Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003188.1

Orthogroup ID

OG0005964

Physical Location & Seq

Genomic Coordinates Reverse (-)

37204 .. 37519

Gene Structure 316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003188.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atggcatcgcaagatacaggaagacctctgccgaaatttggagagtgggatgtgaacaatccagcctcggccgaagggtttacagtgatatttagcaaagctagagaccagaaaatgaacaatggacccgggaactcgaaaaagcattcatttaagccccaaaacaacagtgatgatgccccaaaggtacgtattattgacccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

68

Amino Acids

7.49

Weight (kDa)

9.22

Isoelectric Point (pI)

21.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40645
fragaria_vesca	FvH4_5g07230 FvH4_5g07230 FvH4_6g52270
malus_domestica	MD06G1158600.v1.1 MD09G1019200.v1.1 MD14G1165000.v1.1 MD17G1019800.v1.1
prunus_persica	Prupe.3G297800_v2.0.a1 Prupe.5G158200_v2.0.a1
pyrus_communis	pycom06g14150 pycom17g01640
rosa_chinensis	RchiOBHm_Chr7g0191421
rosa_laevigata	RLG00000022224
rosa_multiflora	Rmu_sc0003188.1_g000008
rosa_roxburghii	Rroxscaffold_2G00078610 Rroxscaffold_3G00263830
rosa_rugosa	Rorug02G0572900.1
rosa_samantha	Rh2AG651900 Rh2BG662700 Rh2CG627300 Rh2DG677800 Rh7AG118100 Rh7BG120200 Rh7CG123000 Rh7DG121100
rosa_wichuraiana	Rw2G053530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	35
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	99
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	2 cut(s)	129, 130
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	28
BcnI	CCSGG	2 cut(s)	129, 130
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	129, 130
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	129, 130
BmsI	GCATC	2 cut(s)	14, 166
BpiI	GAAGAC	1 cut(s)	28
BpuMI	CCSGG	2 cut(s)	129, 130
BsaAI	YACGTR	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	66, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	66, 128
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	128
BspANI	GGCC	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	66, 128
Bst4CI	ACNGT	2 cut(s)	85, 170
BstBAI	YACGTR	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	99
BstMCI	CGRYCG	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	127, 128
BstSNI	TACGTA	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	90, 175
Cfr13I	GGNCC	1 cut(s)	125
Cfr9I	CCCGGG	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	188
CviJI	RGCY	4 cut(s)	65, 71, 101, 157
CviKI_1	RGCY	4 cut(s)	65, 71, 101, 157
CviQI	GTAC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
EclXI	CGGCCG	1 cut(s)	69
Eco105I	TACGTA	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	128
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	129
HpaII	CCGG	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	55, 81
Hpy8I	GTNNAC	2 cut(s)	55, 81
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	85, 170
HpyCH4IV	ACGT	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	190
LpnPI	CCDG	4 cut(s)	3, 75, 122, 142
LweI	GCATC	2 cut(s)	14, 166
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	190
MboII	GAAGA	1 cut(s)	33
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	2 cut(s)	36, 76
MseI	TTAA	2 cut(s)	153, 205
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	129, 130
Mva1269I	GAATGC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	129, 130
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	47
PctI	GAATGC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	153, 205
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 130
SetI	ASST	4 cut(s)	28, 103, 189, 193
SfaNI	GCATC	2 cut(s)	14, 166
SinI	GGWCC	1 cut(s)	125
SmaI	CCCGGG	1 cut(s)	130
SnaBI	TACGTA	1 cut(s)	191
Sse9I	AATT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	127, 128
TaaI	ACNGT	2 cut(s)	85, 170
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	153, 205
Tru9I	TTAA	2 cut(s)	153, 205
TscAI	CASTG	2 cut(s)	90, 175
TspDTI	ATGAA	2 cut(s)	131, 138
TspMI	CCCGGG	1 cut(s)	128
TspRI	CASTG	2 cut(s)	90, 175
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	128
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.