Rh7AG118100

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005964
Physical Location & Seq
Forward (+)
9251598 .. 9252460
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG118100.1

Sequence Viewer

Length: 252 bp
ATGGCTTCGGATAAAGGTCGGCCCTTACCTAAATTTGGTGAGTGGGATGTAAATAACCCAGCATCAGCTGAAGGATTTACTGTCATATTCAACAAGGCCCGAGATGATAAGAAGACCAATGCGTCTCATCCTAATGTTGTGACCCCACGAAAAGGCGATAGCAGCGTACGAAGAGGTACTAAATACAACAATGACTACCACGTCGACAATTATCCTCAATATCCCCAAAAGGTAAAGTTAATGTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

83

Amino Acids

9.4

Weight (kDa)

9.64

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 5 - 38 1.6e-19 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 121, 200
AccI GTMKAC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 2 cut(s) 168, 178
AfiI CCNNNNNNNGG 2 cut(s) 35, 152
AgsI TTSAA 1 cut(s) 91
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 2 cut(s) 20, 96
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 21, 97
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 129
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 21, 97
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 152
BseGI GGATG 2 cut(s) 52, 127
BseLI CCNNNNNNNGG 2 cut(s) 35, 152
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 22, 98
BsiHKCI CYCGRG 1 cut(s) 99
BsiWI CGTACG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 35, 152
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsnI GGCC 2 cut(s) 22, 98
BsoBI CYCGRG 1 cut(s) 99
BspANI GGCC 2 cut(s) 22, 98
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 166
BstF5I GGATG 2 cut(s) 52, 127
BstMAI GTCTC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 22, 98
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 52, 127
Cfr13I GGNCC 2 cut(s) 21, 97
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 167, 177
CviJI RGCY 4 cut(s) 5, 22, 68, 98
CviKI_1 RGCY 4 cut(s) 5, 22, 68, 98
CviQI GTAC 2 cut(s) 167, 177
DrdI GACNNNNNNGTC 2 cut(s) 121, 200
DseDI GACNNNNNNGTC 2 cut(s) 121, 200
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 129
FaiI YATR 1 cut(s) 86
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 2 cut(s) 59, 114
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 2 cut(s) 22, 98
HgaI GACGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 201
LpnPI CCDG 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 2 cut(s) 124, 183
MluCI AATT 3 cut(s) 32, 208, 246
MnlI CCTC 2 cut(s) 167, 225
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 139
Pfl23II CGTACG 1 cut(s) 166
PkrI GCNGC 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 58
PspLI CGTACG 1 cut(s) 166
PspPI GGNCC 2 cut(s) 21, 97
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 168, 178
RsaNI GTAC 2 cut(s) 167, 177
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 21, 97
SetI ASST 6 cut(s) 19, 31, 70, 178, 204, 234
SfaNI GCATC 1 cut(s) 71
SgeI CNNG 6 cut(s) 71, 106, 111, 113, 159, 212
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 3 cut(s) 32, 208, 246
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 204
TasI AATT 3 cut(s) 32, 208, 246
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 139
XapI RAATTY 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.